FFCP PHASE1:Hg19::chr9:129376233..129376251,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4010 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6654 | |||
|TSSclassifier=weak | |||
|UniProt=F8W7W6,O60663,F8VYP0,B7ZLH2,Q6ISE0 | |||
|association_with_transcript=-470bp_to_ENST00000355497,ENST00000373474,ENST00000425646,ENST00000526117,NM_001174146,NM_001174147,NM_002316_5end | |||
|coexpression_cluster_id=C4801 | |||
|description=CAGE_peak_2_at_LMX1B_5end | |||
|id=chr9:129376233..129376251,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.57e-07!5;CL:0000153!1.96e-07!9;CL:0000447!1.96e-07!9;CL:0002327!5.13e-07!4;CL:0000066!6.35e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002367;1.15e-09;2!CL:0002327;3.43e-09;4!CL:0002363;4.50e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002367,1.15e-09,2;CL:0002327,2.65e-09,4;CL:0002363,4.42e-09,2;CL:0000008,4.42e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000008;4.50e-09;2 | |||
|ontology_enrichment_disease=DOID:0050687!7.19e-11!143;DOID:305!9.82e-09!106;DOID:5093!1.68e-07!4;DOID:1612!1.68e-07!4;DOID:162!5.62e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:5093;3.14e-10;4!DOID:1612;3.14e-10;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.15e-10,4;DOID:1612,3.15e-10,4 | |||
|ontology_enrichment_uberon=UBERON:0002298!5.21e-10!8;UBERON:0000489!5.74e-08!32;UBERON:0003076!1.53e-07!15;UBERON:0003057!1.53e-07!15;UBERON:0001911!5.13e-07!4;UBERON:0005333!5.13e-07!4;UBERON:0008425!5.13e-07!4;UBERON:0005311!5.13e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0005969;1.15e-09;2!UBERON:0003956;1.15e-09;2!UBERON:0001829;1.38e-09;2!UBERON:0003891;2.01e-09;4!UBERON:0001911;3.43e-09;4!UBERON:0003566;4.50e-09;2!UBERON:0001777;4.50e-09;2!UBERON:0001044;5.81e-07;6!UBERON:0003293;5.81e-07;6!UBERON:0003294;5.81e-07;6!UBERON:0010047;5.81e-07;6!UBERON:0003408;5.81e-07;6!UBERON:0000167;5.81e-07;6!UBERON:0000970;7.14e-07;20!UBERON:0000310;7.66e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005969,1.15e-09,2;UBERON:0003956,1.15e-09,2;UBERON:0001829,1.36e-09,2;UBERON:0003891,1.77e-09,4;UBERON:0001911,2.65e-09,4;UBERON:0005333,2.65e-09,4;UBERON:0008425,2.65e-09,4;UBERON:0005311,2.65e-09,4;UBERON:0003566,4.42e-09,2;UBERON:0001777,4.42e-09,2;UBERON:0005085,6.74e-09,31;UBERON:0001044,5.82e-07,6;UBERON:0003293,5.82e-07,6;UBERON:0003294,5.82e-07,6;UBERON:0010047,5.82e-07,6;UBERON:0000167,5.82e-07,6;UBERON:0000310,7.78e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.579386075843295,0.795285947051099,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0.70296429550139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9618082045921,0,0,0,0,0,0,0.487894824518382,0.530119073285941,0.580969714347592,2.38420426535352,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0.686271241194102,1.20725313949488,0,0,0,2.28065813717227,6.23960871167747,0,0,0,0,0,0,17.3844967551041,22.3206402144667,0,0,0,0,0,0,1.25381931783988,1.74380363108377,4.98397482914775,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0.812839312631559,1.50506932156456,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,1.72279661398852,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0.658589785919804,15.1789269506286,47.2411872330727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.9907859615277,2.88743956579008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0.333698283423817,0,0,0,0,0,0,0,0.293016358543788,0.728163130497081,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0.358042349351218,0,0.0986434056369336,0,0,0,0,0,10.6775382044946,0.874599999961957,2.17499872630438,0,0,0.236387681767936,0,1.16641845353302,0.173624994933292,0,0,0,0,0,0,0,0.697118721393016,0,0,1.1528195219403,0,0.325942115766024,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55488378577335,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0.586993856796269,0.242780379534093,0,0,0,2.0851571277401,1.05226393590145,0.829505531177977,0.664653872707185,1.323967823502,1.88359751044335,3.58417289318877,0,0.416024019039416,0.520679215005393,0.195984794828755,0.435296032902013,0,0,0,0,0,0,0.706049013532002,6.10148000107438,0.411125773940253,0,0,0.391102765469606,0,0,0.39961921916426,1.72908500584927,0.572682980829578,10.8104848653038,0,0.124252535565433,0.235694034616795,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,1.11712960508902,0.458320848023367,0,0,0,0,0.134366944973453,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,0.2249738915515,0,0,0.670869375198532,0.788057072991982,5.92736845925479,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0.646414781807753,0.92562821219883,0,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,1.14681839138014,0.110929051536852,0.683060432355218,0.138348634936231,0,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,2.3489486276869,0,0,0,0.179088841081487,0,0,0,0.38582807654183,0,0,0.345430341731199,0.303859956177382,0,0,0,0,0,0,0,0,0.426766918776564,0,0,0,0,0,0,0,1.25812753484717,0,0,0.425149840203366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07962490351128,0.353909170043221,0,0.115525666150338,0,0,0.596748666348824,0,0,0,0,0,0,0,0,0,0,0,20.2855373737157,0,10.200532172858,0.255524855279191,0,0,0,0.227662191351298,0,0,0,0.135939465953663,0,0.118193840883968,0,0.078493092850514,0,0,0,0,0,9.86376309637857,0,0.23248285073625,0.521574816907738,0,0,0,0,20.220685864553,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0.467878926924211,0.198950775161368,0.594600453887843,0,0,1.35866559210006,0,0,0,0,2.12108892391463,2.35570160537934,0.297046400327086,2.113278637917,0,0,0,0,0.71421575442263,0,0,0,12.3856906519226,0.143339583151451,9.62406529378426,0,0,0,0,0,0,0,0,7.47521155967478,0.101988829741982,0,1.19463369395298,0.250707539292375,0.454672189309436,1.60778478093707,0,0.103432995861895,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p2@LMX1B | |||
}} |
Revision as of 03:19, 23 January 2014
Short description: | p2@LMX1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LMX1B_5end |
Coexpression cluster: | C4801_Trabecular_Wilms_parotid_MCF7_salivary_breast_submaxillary |
Association with transcript: | -470bp_to_ENST00000355497, ENST00000373474, ENST00000425646, ENST00000526117, NM_001174146, NM_001174147, NM_002316_5end |
EntrezGene: | LMX1B |
HGNC: | 6654 |
UniProt: | F8W7W6O60663F8VYP0B7ZLH2Q6ISE0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trabecular meshwork cell | 1.15e-09 | 2 |
mammary gland epithelial cell | 2.65e-09 | 4 |
keratocyte | 4.42e-09 | 2 |
migratory cranial neural crest cell | 4.42e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
reticulum trabeculare | 1.15e-09 | 2 |
aqueous drainage system | 1.15e-09 | 2 |
major salivary gland | 1.36e-09 | 2 |
stroma | 1.77e-09 | 4 |
mammary gland | 2.65e-09 | 4 |
mammary bud | 2.65e-09 | 4 |
mammary ridge | 2.65e-09 | 4 |
mammary placode | 2.65e-09 | 4 |
head connective tissue | 4.42e-09 | 2 |
substantia propria of cornea | 4.42e-09 | 2 |
ectodermal placode | 6.74e-09 | 31 |
saliva-secreting gland | 5.82e-07 | 6 |
gland of oral region | 5.82e-07 | 6 |
gland of foregut | 5.82e-07 | 6 |
oral gland | 5.82e-07 | 6 |
oral cavity | 5.82e-07 | 6 |
breast | 7.78e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.15e-10 | 4 |
breast cancer | 3.15e-10 | 4 |