FFCP PHASE1:Hg19::chr7:142251189..142251208,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12229 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-31bp_to_ENST00000390360_5end | |||
|coexpression_cluster_id=C3928 | |||
|description=CAGE_peak_2_at_TRBV6-4_5end | |||
|id=chr7:142251189..142251208,- | |||
|ontology_enrichment_celltype=CL:0000791!8.88e-42!18;CL:0000789!8.88e-42!18;CL:0002420!8.88e-42!18;CL:0002419!8.88e-42!18;CL:0000790!8.88e-42!18;CL:0000084!4.37e-32!25;CL:0000827!4.37e-32!25;CL:0000625!2.18e-30!11;CL:0000838!5.36e-18!52;CL:0000542!1.51e-17!53;CL:0000051!1.51e-17!53;CL:0000080!8.58e-17!6;CL:0000624!9.60e-16!6;CL:0000738!8.49e-13!140;CL:0002087!3.89e-11!119;CL:0000988!2.43e-10!182;CL:0000842!7.15e-09!3;CL:0000037!7.26e-09!172;CL:0000566!7.26e-09!172;CL:0000898!7.54e-09!3;CL:0000623!1.49e-08!3;CL:0000825!1.49e-08!3;CL:0000767!6.23e-08!3;CL:0000081!6.42e-08!11;CL:0002031!9.58e-08!124;CL:0000094!9.90e-08!8;CL:0002032!2.58e-07!165;CL:0000837!2.58e-07!165;CL:0000224!9.83e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.26e-57;18!CL:0000789;2.26e-57;18!CL:0002419;2.26e-57;18!CL:0000625;2.97e-46;11!CL:0000084;3.30e-40;25!CL:0000624;6.61e-17;6!CL:0000898;1.37e-12;3!CL:0000542;8.43e-12;53!CL:0000815;4.81e-09;2!CL:0000792;4.81e-09;2!CL:0002677;4.81e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.82e-57,18;CL:0000789,1.82e-57,18;CL:0002420,1.82e-57,18;CL:0002419,1.82e-57,18;CL:0000790,1.82e-57,18;CL:0000625,3.32e-46,11;CL:0000084,2.83e-40,25;CL:0000827,2.83e-40,25;CL:0000838,2.83e-22,52;CL:0000542,9.03e-22,53;CL:0000051,9.03e-22,53;CL:0000624,4.97e-17,6;CL:0000898,8.06e-13,3;CL:0002087,7.02e-10,115;CL:0000815,3.84e-09,2;CL:0000792,3.84e-09,2;CL:0002677,3.84e-09,2;CL:0000738,1.10e-08,136;CL:0000988,4.18e-08,177;CL:0002031,3.42e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;2.26e-57;18!CL:0000051;8.43e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!7.45e-28!15;UBERON:0000179!7.45e-28!15;UBERON:0000463!7.45e-28!15;UBERON:0002370!4.91e-07!4;UBERON:0005058!4.91e-07!4;UBERON:0009113!4.91e-07!4;UBERON:0003295!4.91e-07!4;UBERON:0005562!4.91e-07!4;UBERON:0002390!9.87e-07!102;UBERON:0003061!9.87e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.86e-26;15!UBERON:0000179;6.86e-26;15!UBERON:0000463;6.86e-26;15!UBERON:0002390;1.51e-15;32!UBERON:0002370;7.52e-10;2!UBERON:0005058;7.52e-10;2!UBERON:0009113;7.52e-10;2!UBERON:0002193;1.93e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.57e-26,15;UBERON:0000179,7.57e-26,15;UBERON:0000463,7.57e-26,15;UBERON:0002370,3.14e-10,4;UBERON:0005058,3.14e-10,4;UBERON:0009113,3.14e-10,4;UBERON:0003295,3.14e-10,4;UBERON:0005562,3.14e-10,4;UBERON:0003351,5.97e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.767658796194425,0.464448369948228,0,0,0,0,0,0,0,0.601633342410425,0,0.223915474239924,0,0.515151135268373,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,3.53709686474248,2.05601498999509,1.33749196312542,2.60737813306872,3.78758244587787,1.94826728407911,2.1167986808183,1.47302953737419,1.32920336750173,1.89562704635511,1.0247305578054,1.43065282315866,2.30213066445147,2.21080014228679,1.44901542867526,2.96573126324121,2.67540828089713,2.09071047609954,1.13309342697566,1.91610246800961,1.03088233644789,2.02415753615602,3.18565414324097,4.55758417699493,3.8018081777935,6.92645547757755,5.24745105733115,12.4930726552346,8.52398107358461,10.6746639599736,5.84659555351724,3.20928234940209,1.44824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18218456121156,4.74380664690938,0.256686072559497,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.20304078368662,0.862856803274467,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,1.13929437434833,2.62054953003568,0.822724546172388,1.29694662238543,1.08006287447623,2.37937552888281,0,0,0,0,0,0.497992903438899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,3.55825354416746,7.04314451995066,5.95205112181096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.218559560503957,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.714193294391221,6.26512425409259,3.22788514338461,0,0,0,0,0,0.404112318087525,0.0717222053926763,0,0,0,0,0,0,0,0,0,1.61019034872821,0 | |||
|short_description=p2@TRBV6-4 | |||
}} |
Revision as of 19:46, 22 January 2014
Short description: | p2@TRBV6-4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_2_at_TRBV6-4_5end |
Coexpression cluster: | C3928_cord_CD8_Natural_small_CD19_CD4_Whole |
Association with transcript: | -31bp_to_ENST00000390360_5end |
EntrezGene: | NA |
HGNC: | 12229 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.82e-57 | 18 |
alpha-beta T cell | 1.82e-57 | 18 |
immature T cell | 1.82e-57 | 18 |
mature T cell | 1.82e-57 | 18 |
immature alpha-beta T cell | 1.82e-57 | 18 |
CD8-positive, alpha-beta T cell | 3.32e-46 | 11 |
T cell | 2.83e-40 | 25 |
pro-T cell | 2.83e-40 | 25 |
lymphoid lineage restricted progenitor cell | 2.83e-22 | 52 |
lymphocyte | 9.03e-22 | 53 |
common lymphoid progenitor | 9.03e-22 | 53 |
CD4-positive, alpha-beta T cell | 4.97e-17 | 6 |
naive T cell | 8.06e-13 | 3 |
nongranular leukocyte | 7.02e-10 | 115 |
regulatory T cell | 3.84e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.84e-09 | 2 |
naive regulatory T cell | 3.84e-09 | 2 |
leukocyte | 1.10e-08 | 136 |
hematopoietic cell | 4.18e-08 | 177 |
hematopoietic lineage restricted progenitor cell | 3.42e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 7.57e-26 | 15 |
haemolymphatic fluid | 7.57e-26 | 15 |
organism substance | 7.57e-26 | 15 |
thymus | 3.14e-10 | 4 |
hemolymphoid system gland | 3.14e-10 | 4 |
thymic region | 3.14e-10 | 4 |
pharyngeal gland | 3.14e-10 | 4 |
thymus primordium | 3.14e-10 | 4 |
pharyngeal epithelium | 5.97e-07 | 6 |