FFCP PHASE1:Hg19::chr7:54879666..54879725,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C418 | |||
|description=CAGE_peak_at_chr7:54879666..54879725,- | |||
|id=chr7:54879666..54879725,- | |||
|ontology_enrichment_celltype=CL:0000183!7.12e-11!59;CL:0000192!3.13e-10!42;CL:0000514!3.13e-10!42;CL:0000187!1.54e-09!54;CL:0000680!1.95e-09!57;CL:0000056!1.95e-09!57;CL:0000355!1.95e-09!57;CL:0000393!7.19e-08!60;CL:0000211!7.19e-08!60 | |||
|ontology_enrichment_celltype_v019=CL:0002195;5.80e-10;2!CL:0002571;5.80e-10;2!CL:0002549;4.33e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,5.81e-10,2;CL:0002571,5.81e-10,2;CL:0002549,8.41e-09,2;CL:0000192,1.12e-07,43;CL:0000514,1.12e-07,43 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.16e-13;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!1.95e-14!9;UBERON:0000481!3.10e-11!347;UBERON:0003104!8.93e-10!238;UBERON:0009142!8.93e-10!238;UBERON:0002200!1.09e-08!11;UBERON:0006876!1.09e-08!11;UBERON:0004921!1.75e-08!129;UBERON:0004185!1.75e-08!129;UBERON:0001134!2.48e-08!61;UBERON:0002036!2.48e-08!61;UBERON:0003082!2.48e-08!61;UBERON:0004119!3.27e-08!169;UBERON:0000925!3.27e-08!169;UBERON:0006595!3.27e-08!169;UBERON:0000914!6.66e-08!83;UBERON:0002329!6.66e-08!83;UBERON:0003077!6.66e-08!83;UBERON:0003059!6.66e-08!83;UBERON:0007282!6.66e-08!83;UBERON:0009618!6.66e-08!83;UBERON:0007285!6.66e-08!83;UBERON:0002385!7.71e-08!63;UBERON:0001015!7.71e-08!63;UBERON:0000383!7.71e-08!63;UBERON:0004290!9.21e-08!70;UBERON:0001557!1.09e-07!19;UBERON:0000923!4.64e-07!604;UBERON:0005291!4.64e-07!604;UBERON:0006598!4.64e-07!604;UBERON:0002532!4.64e-07!604;UBERON:0002050!5.39e-07!605;UBERON:0005423!5.39e-07!605;UBERON:0005256!5.79e-07!143;UBERON:0001007!6.26e-07!155;UBERON:0001555!6.26e-07!155;UBERON:0007026!6.26e-07!155;UBERON:0000922!6.49e-07!612;UBERON:0005284!7.85e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.27e-40;9!UBERON:0001557;7.27e-40;9!UBERON:0000072;1.88e-15;37!UBERON:0000065;7.95e-12;44!UBERON:0005629;4.33e-09;2!UBERON:0005358;4.33e-09;2!UBERON:0001886;4.33e-09;2!UBERON:0004086;4.33e-09;2!UBERON:0005282;4.33e-09;2!UBERON:0005281;4.33e-09;2!UBERON:0005284;7.37e-08;5!UBERON:0001004;9.02e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,7.37e-40,9;UBERON:0001557,5.82e-18,19;UBERON:0008947,2.04e-14,38;UBERON:0003258,2.04e-14,38;UBERON:0004921,6.51e-14,118;UBERON:0000072,4.68e-13,47;UBERON:0001007,1.78e-11,145;UBERON:0001555,1.78e-11,145;UBERON:0007026,1.78e-11,145;UBERON:0000065,5.45e-11,54;UBERON:0004119,6.66e-11,160;UBERON:0000925,6.66e-11,160;UBERON:0006595,6.66e-11,160;UBERON:0011216,6.67e-11,223;UBERON:0001004,6.18e-10,74;UBERON:0001041,2.27e-09,87;UBERON:0005629,8.41e-09,2;UBERON:0005358,8.41e-09,2;UBERON:0001886,8.41e-09,2;UBERON:0004086,8.41e-09,2;UBERON:0005282,8.41e-09,2;UBERON:0005281,8.41e-09,2;UBERON:0005284,1.31e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.47440361900905,0.697801167972428,0,0,0.37129905888014,0,0.672325146451775,1.20538905604795,0,0.487932798790507,0,1.22400414746552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.614843499851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0.436094052142534,0,0.379891534993739,0.132409180813219,0,0.354668382198357,0,0,0.24666754841716,0,0,0,1.05950199351452,1.15235184896,0.234321431833797,0.312160076830321,0.570471821544449,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0.494533858557114,0.910161361938026,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.7934148123914,32.3682604949955,29.4033456457848,40.1470060745914,37.2573849398015,29.6588273888871,42.0673681459713,31.3954344200554,33.473002654336,0,0,0,0,0,0,0.590789906681404,0,0,0.857839051492628,0.329250856225877,0,0,0,0.325808305310325,0,0,0,0.587043471179108,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74384027533312,0.5867062865676,0,0,0,0,0,0.257207374262142,0,0.266422179016099,7.57783366388182,0,0,0,4.97548728239564,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.49076596687656,1.00034104211935,0.813795071099207,0.207970861530807,0,0,0,0,0,0,0,0,0.0868836144680828,1.37060810223918,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0,0.200506470303285,0.0920809889358963,0.459257792658427,1.27463817604702,2.75361271414791,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0.984043937099117,0.325378394664303,0,0,0,0,0.650060246036521,0,0,0,0,0,0.214840489736547,0.145016693914229,0.0852266274161009,0.0890320356467374,0.661139661443912,0.384380134730212,0,0.30347334256665,0.929691098594572,0,0,0,0,0,0,0.286249773483982,1.116475108079,0.316379424718726,0.190630193923825,1.02359116524534,0,0,0,1.43897966066652,1.09814811894422,0.706874414074119,0.404364963146632,1.58510321173008,0,3.41343617362713,0,2.11300293513511,0.818999468447914,1.55545975149084,0,0.551365343546124,0,0,2.31510213706675,0,0.405820753925408,0,0,0,0,0.35667105148125,0,0,0,0,0.699869440489966,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19832309870889,0,0,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0.103688191397247,0,0,0,0,0.284609546029793,0.138674673013139,0,0,0,0,0,2.51566461351621,3.21592995179216,2.38134825454307,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,1.32597682927218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,1.47305718976163,0,0,0,0,0.171086837884329,0,0,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,1.12482367165896,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0.15543720058278,0,0.159296767163702,0,0.155262956876259,0,0.265841714557995,0,0.150257608997218,0.380805212168795,0,0.181848659202559,0.214821114084977,0,0,0,0,0,0,0,2.14441591374926,0,0,0.231522474323834,1.95789363605174,0,0,1.31570429747224,0,1.92914038270915,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0.318004350653419,0,0,1.76337971845342,153.1227386766,0.0642292250964595,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0.690359926060101,0,0.225630985047772,0,0.781514011233092,0,0,0,0,0,0,0,0,0.548257766857182,0,0.175871244359621,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0.118193840883968,0,0,0,0,3.65263488203798,16.8423521150525,0,0.0714765441766563,0,0,0,0.801711364730253,0,0,0,2.15113679410139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874238242015829,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0.458729283404541,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,1.9307228228694,0,0,0,0,0.665756774185513,0,0 | |||
|short_description=p@chr7:54879666..54879725,- | |||
}} |
Revision as of 17:04, 22 January 2014
Short description: | p@chr7:54879666..54879725, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:54879666..54879725, - |
Coexpression cluster: | C418_normal_Melanocyte_Hep2_cervical_umbilical_osteosarcoma_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 5.81e-10 | 2 |
hepatic mesenchymal stem cell | 5.81e-10 | 2 |
fibroblast of choroid plexus | 8.41e-09 | 2 |
smooth muscle cell | 1.12e-07 | 43 |
smooth muscle myoblast | 1.12e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
larynx | 7.37e-40 | 9 |
upper respiratory tract | 5.82e-18 | 19 |
respiratory primordium | 2.04e-14 | 38 |
endoderm of foregut | 2.04e-14 | 38 |
subdivision of digestive tract | 6.51e-14 | 118 |
segment of respiratory tract | 4.68e-13 | 47 |
digestive system | 1.78e-11 | 145 |
digestive tract | 1.78e-11 | 145 |
primitive gut | 1.78e-11 | 145 |
respiratory tract | 5.45e-11 | 54 |
endoderm-derived structure | 6.66e-11 | 160 |
endoderm | 6.66e-11 | 160 |
presumptive endoderm | 6.66e-11 | 160 |
organ system subdivision | 6.67e-11 | 223 |
respiratory system | 6.18e-10 | 74 |
foregut | 2.27e-09 | 87 |
vascular plexus | 8.41e-09 | 2 |
ventricle of nervous system | 8.41e-09 | 2 |
choroid plexus | 8.41e-09 | 2 |
brain ventricle | 8.41e-09 | 2 |
ventricular system of brain | 8.41e-09 | 2 |
ventricular system of central nervous system | 8.41e-09 | 2 |
brain vasculature | 1.31e-07 | 5 |