FFCP PHASE1:Hg19::chr7:50860565..50860611,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2887 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4564 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=54bp_to_ENST00000403097,uc003tpl.2_5end | |||
|description=CAGE_peak_3_at_GRB10_5end | |||
|id=chr7:50860565..50860611,- | |||
|ontology_enrichment_celltype=CL:0000055!9.45e-11!180;CL:0000133!3.20e-08!59;CL:0002321!7.51e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.68e-07;7!CL:0000586;3.68e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,1.99e-09,59;CL:0000039,2.53e-07,7;CL:0000586,2.53e-07,7;CL:0000221,9.10e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!1.63e-09!22;DOID:2994!1.63e-09!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.38e-11;22!DOID:2994;1.38e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.65e-12,22;DOID:2994,3.65e-12,22 | |||
|ontology_enrichment_uberon=UBERON:0001048!5.24e-08!168;UBERON:0002104!4.02e-07!21;UBERON:0000970!6.53e-07!20;UBERON:0000475!8.10e-07!365;UBERON:0001032!8.86e-07!24;UBERON:0004456!8.86e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002104;2.88e-09;21!UBERON:0001032;4.01e-09;24!UBERON:0004456;4.01e-09;24!UBERON:0000970;5.44e-09;20!UBERON:0000020;7.68e-09;23!UBERON:0000019;2.09e-08;19!UBERON:0000047;2.09e-08;19!UBERON:0004088;2.09e-08;19!UBERON:0010230;2.09e-08;19!UBERON:0001456;5.43e-08;21!UBERON:0001801;1.17e-07;14!UBERON:0007625;2.34e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.77e-09,21;UBERON:0002104,1.77e-09,21;UBERON:0000020,5.69e-09,24;UBERON:0001032,5.69e-09,24;UBERON:0004456,5.69e-09,24;UBERON:0000019,6.49e-09,20;UBERON:0000047,6.49e-09,20;UBERON:0010312,6.49e-09,20;UBERON:0004088,6.49e-09,20;UBERON:0010230,6.49e-09,20;UBERON:0003072,6.49e-09,20;UBERON:0004128,6.49e-09,20;UBERON:0003071,6.49e-09,20;UBERON:0001456,2.62e-08,22;UBERON:0001801,8.30e-08,14;UBERON:0007625,2.64e-07,11;UBERON:0006876,9.69e-07,11 | |||
|phase1_expression=1.63510541343501,1.2846031433459,4.36958652697511,4.00293193412522,4.91657203870017,2.61701557230111,7.59899634504932,0.631719873426831,0.522371256399677,0.982935746006035,0.697801167972428,0.873765488520689,0.263766978228454,1.60896258848061,0.331397375727916,0.672325146451775,0.602694528023977,0,0.487932798790507,2.46242116153576,4.89601658986207,2.5076377718247,0,3.14811177667634,1.88313959392204,0,0,0,0,0,0,0,0.6024118375565,0,0,0,0.293600439334847,0,0,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.255725123687061,3.61439152384566,3.00802746381534,2.02785126545153,0,0.486634870302636,6.99557647014102,4.43458794925128,4.56740885604255,0.72038491523742,0,0,0,0,0,0,0,0,0.993812036833525,0,0.347140501607594,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,1.03366703667732,0.35576626268671,0,0.805658634218294,1.52054421143703,0.24406205754817,1.10298924103761,0,0.446498641420399,1.12264686313085,0.563057402416611,0,0.949265659568129,0.549605231791222,0,0,0,1.49091585508596,0.886413581652058,1.58891016975863,3.15520282823695,1.06400514659507,1.68203280042692,5.33744978648525,1.97334038733728,0.311211035399766,1.48181739276657,0.653847612453835,2.57307626996383,2.30470369792,2.10889288650417,0.936480230490962,0,0.747243402759005,1.29177948508141,1.45685649931318,0.98315564691574,0,0.61417158655884,0.929932030581889,0,0.741800787835671,0.910161361938026,0.718618141816238,0.673344455816265,0.125118519871964,0.277064115484183,0.438977620880838,1.5324389789951,1.65261864797256,0.794025282120147,0.89694817844431,0.85422955527427,0.847727604638247,0.900273288253207,1.33968288009971,3.09168648054755,1.30281799432113,1.5189869901714,0.68205903612839,1.26216887122057,2.20919756741518,1.2931684545505,1.42003837006646,0.503760491138201,0.847802961552438,0,0.272746120590835,0,2.5614478287215,4.63854189125198,1.85910308591229,2.17688215532278,1.7662459561294,6.20461510428911,4.69348596989448,1.28648187638577,1.38134921352481,2.3218396401599,0.721879481669586,1.0647612003586,0.674338760312407,0,0.110293972732394,0.653638332277218,0.237270619111097,0.404493924480493,0.392442930250692,0,0.738155454624648,2.80483547606892,0.4115740113314,1.47008711385542,0,0.982827216677626,0.590789906681404,0,0.737930631258681,1.71567810298526,0.219500570817251,1.1240175325762,0.100528972411631,0.0925884451585296,2.93227474779292,2.07986957055916,4.3299402607582,8.57884996815569,2.23076519048061,0.433099343283221,0,0.380508304469197,0,0,0,0,0,0,0,0.283550194484773,0.358234090811393,0,0.383382679165211,0,0.528290604079356,0,0.144119953416961,0,0.126995788584338,1.14596527667483,0,0,0.308482478109971,0,0.571652865261156,2.24262168690721,5.23152082599936,0.95339771567235,1.16344544182,0,0,1.86156681609409,4.16029747645464,0,1.41849132023278,0.532844358032199,0.857867961948885,3.25572963234866,0,0.325736184293735,1.06617584622764,0,0.602878754119172,1.74306691720059,0.599837947092342,0,0,0,3.11512312139057,6.89171615004683,1.42636905040718,0.723906533337896,0,0.716243852959582,0,0,0,0,4.06551398755941,2.60279707715243,0.773288812777695,0.670065061337395,1.91381625495949,0.749007023947182,0,0,1.10422342547226,0.500170521059677,2.44138521329762,1.45579603071565,1.78428988797162,2.20783381047509,1.17141414992713,0.902838299183157,0,0,0.664225598535437,0.553107505625109,1.21637060255316,5.09083009403126,3.43143423810856,0,0,0,0,3.32870879020994,1.81434175997808,2.72918588600655,1.38115775959256,1.68396056659844,3.84417447767103,1.02341449813341,1.28683136914886,0,0.462629081407967,1.06537035187876,0.492762936082855,0,0.581051892299796,1.93375119346596,0,0.368323955743585,0.68888668898764,1.63882051206045,2.75361271414791,0.451199612907412,0.539107359730903,1.56869953835371,1.46139224653261,0.527758144464379,1.13733384070897,0.680374821106063,0.215915916102139,0,0,0,0.509752546090077,0,0.223874754722178,0.219259876645935,0.522870902049801,1.28225062558195,0.656029291399411,3.25378394664303,0.824328093181778,0.366277859273374,0.907604499126468,0,0.650060246036521,0,1.35339005608971,1.84858340537573,1.68854042198743,0.551346289938122,1.6113036730241,1.30515024522806,1.27839941124151,2.49289699810865,0.495854746082934,1.72971060628596,0.255225424989168,0.809262246844399,1.39453664789186,0.31481234683064,0,1.23213432070436,1.06461206063404,0,1.29726953372744,2.57624796135584,0.372158369359667,2.21465597303108,1.5250415513906,1.02359116524534,2.1396949401696,1.59101623962968,3.92474320099615,0.179872457583315,1.92175920815238,0.706874414074119,1.81964233415984,0,0,0.975267478179181,1.70599442741899,2.11300293513511,0.682499557039929,1.27264888758341,1.13008116620243,0.551365343546124,0,0.876901770507525,0,1.31178950409327,0.405820753925408,1.54911749049875,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| |||
|short_description=p3@GRB10 | |||
}} |
Revision as of 17:02, 22 January 2014
Short description: | p3@GRB10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GRB10_5end |
Coexpression cluster: | NA |
Association with transcript: | 54bp_to_ENST00000403097, uc003tpl.2_5end |
EntrezGene: | GRB10 |
HGNC: | 4564 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 1.99e-09 | 59 |
germ line cell | 2.53e-07 | 7 |
germ cell | 2.53e-07 | 7 |
ectodermal cell | 9.10e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
eye | 1.77e-09 | 21 |
visual system | 1.77e-09 | 21 |
sense organ | 5.69e-09 | 24 |
sensory system | 5.69e-09 | 24 |
entire sense organ system | 5.69e-09 | 24 |
camera-type eye | 6.49e-09 | 20 |
simple eye | 6.49e-09 | 20 |
immature eye | 6.49e-09 | 20 |
ocular region | 6.49e-09 | 20 |
eyeball of camera-type eye | 6.49e-09 | 20 |
optic cup | 6.49e-09 | 20 |
optic vesicle | 6.49e-09 | 20 |
eye primordium | 6.49e-09 | 20 |
face | 2.62e-08 | 22 |
anterior segment of eyeball | 8.30e-08 | 14 |
pigment epithelium of eye | 2.64e-07 | 11 |
vasculature of organ | 9.69e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.65e-12 | 22 |
germ cell cancer | 3.65e-12 | 22 |