FFCP PHASE1:Hg19::chr6:138189241..138189298,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=71bp_to_uc003qhq.1_5end | |||
|coexpression_cluster_id=C1213 | |||
|description=CAGE_peak_1_at_uc003qhq.1_5end | |||
|id=chr6:138189241..138189298,- | |||
|ontology_enrichment_celltype=CL:0000738!2.28e-34!140;CL:0000037!1.57e-30!172;CL:0000566!1.57e-30!172;CL:0000988!9.77e-29!182;CL:0002032!5.18e-26!165;CL:0000837!5.18e-26!165;CL:0002087!5.19e-26!119;CL:0000542!3.92e-24!53;CL:0000051!3.92e-24!53;CL:0002031!4.48e-24!124;CL:0000838!4.61e-24!52;CL:0000791!2.85e-13!18;CL:0000789!2.85e-13!18;CL:0002420!2.85e-13!18;CL:0002419!2.85e-13!18;CL:0000790!2.85e-13!18;CL:0000084!1.06e-12!25;CL:0000827!1.06e-12!25;CL:0000945!1.72e-10!24;CL:0000826!1.72e-10!24;CL:0000625!1.08e-09!11;CL:0002057!7.09e-09!42;CL:0000860!1.41e-07!45;CL:0000766!1.54e-07!76;CL:0000763!1.62e-07!112;CL:0000049!1.62e-07!112;CL:0000236!3.58e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.00e-28;18!CL:0000789;1.00e-28;18!CL:0002419;1.00e-28;18!CL:0000084;4.31e-27;25!CL:0000625;8.53e-20;11!CL:0000542;2.52e-18;53!CL:0000624;1.42e-12;6!CL:0000236;5.23e-09;13!CL:0002087;3.31e-08;104!CL:0000094;5.72e-08;8!CL:0000784;1.65e-07;3!CL:0000081;2.72e-07;11!CL:0000898;2.94e-07;3!CL:0000226;8.91e-07;3!CL:0000842;8.91e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.47e-30,52;CL:0000542,8.73e-30,53;CL:0000051,8.73e-30,53;CL:0000738,1.44e-29,136;CL:0000791,9.39e-29,18;CL:0000789,9.39e-29,18;CL:0002420,9.39e-29,18;CL:0002419,9.39e-29,18;CL:0000790,9.39e-29,18;CL:0000084,3.49e-27,25;CL:0000827,3.49e-27,25;CL:0000037,2.06e-26,168;CL:0000988,3.28e-25,177;CL:0002087,1.56e-20,115;CL:0000625,8.28e-20,11;CL:0002032,8.54e-20,161;CL:0000837,8.54e-20,161;CL:0002031,7.92e-18,120;CL:0000624,1.36e-12,6;CL:0000236,2.47e-08,14;CL:0000094,7.69e-08,8;CL:0000784,1.66e-07,3;CL:0000898,2.87e-07,3;CL:0000081,3.26e-07,11;CL:0000226,9.30e-07,3;CL:0000842,9.30e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.00e-28;18!CL:0000051;2.52e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.99e-13!102;UBERON:0003061!5.99e-13!102;UBERON:0002193!3.84e-12!112;UBERON:0000178!2.61e-08!15;UBERON:0000179!2.61e-08!15;UBERON:0000463!2.61e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;1.40e-11;32!UBERON:0002193;1.15e-08;42!UBERON:0000178;4.80e-08;15!UBERON:0000179;4.80e-08;15!UBERON:0000463;4.80e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.41e-08,15;UBERON:0000179,3.41e-08,15;UBERON:0000463,3.41e-08,15;UBERON:0002390,7.10e-08,98;UBERON:0003061,7.10e-08,98;UBERON:0002193,7.16e-08,108;UBERON:0004177,3.25e-07,7;UBERON:0005057,3.25e-07,7 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.410623275218653,0,0.61130724598361,0.492603536699674,0.314843125254717,1.18009283054671,2.30297638858328,0.77408061658038,0,0,0,0.387336002901508,0.426507697462265,4.40400659002271,1.10799081706375,1.20326668482085,1.30206522429511,0,0.971680998056939,0.77272670290256,0.145398238779565,0.377875943688809,0.242584061187816,0.464858073811369,0.411167888021826,0.619412741790207,0.863077176966451,0,0.47296445977717,0,1.29096936716765,0,0.752969358170419,0.818718450173537,0.898893937780338,1.22433556948361,0,0.639337125799041,0.329851300186716,0.199463657621632,0.426224750532694,0.290209238628584,1.13477044938228,0.622822248995575,0.75374599577023,0.521482918420201,0.65156653411535,1.81619850790011,1.84138817993782,1.26584954976354,0.211255286311942,0.425208599930087,0,0.22465726229299,0.300353785683013,0.32145117339416,0,0,0,1.75996244461323,2.73069305631066,0,1.28019066769952,0.400395987036012,1.72425731986345,1.32208974556972,0.954053754535364,1.1384259382189,2.34894875748376,1.52909291250092,2.64342657158052,1.12101712596307,2.10707267820062,11.9992959769438,10.6112905942274,6.7848494669838,2.34061093546949,19.5553359980154,12.3096429491031,15.5861382726329,1.89397776704795,14.435689466267,13.5135675696009,13.2693893244858,1.28091319725675,1.95089021339817,0.328875809207352,1.38175008892924,3.18783394308558,24.9121426112262,29.4294910898684,17.7710390468461,0.566546713487831,12.6462762888634,14.0887252647878,10.6268270648191,4.45991580053735,2.60433381542567,3.8018081777935,4.51725357233318,4.09557155694139,8.74515085866421,5.44587679701239,4.10563998460523,6.04820229674197,8.82552646085574,7.09639579025715,0,0.670700859703636,0,0,0,0,0,0.486634870302636,0,0,0.175669571386252,0.0654895377488563,0,0,0,0.174129737299267,0.132957960518865,44.5977467450989,42.3276233977295,50.1467626794913,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0.760272105718513,0.976248230192678,0,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0,9.22462922052443,7.75560528296651,0,0,0,0.926864265692532,0.286836620748814,0.354668382198357,0.560677600142307,1.06748995729705,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0.132529768321485,0,0.310983165046111,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.5414501754153,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0,0,0.383382679165211,0,0,0.207328115540772,0.864719720501769,0.37872730027914,0,0.381988425558278,0,0,0.102827492703324,0,0,0.224262168690721,0,0.22001485746285,0.258543431515556,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0,0,0.716243852959582,0,3.34952292343276,4.9594342217689,5.64709359630893,0,0,0,0,0,3.74503511973591,0,2.07207756718018,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,5.37596867919507,6.47142602455851,8.11129439306177,0,0,0,0.248107807818777,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0.519254429183621,0.116210378459959,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0,0.275673144969061,0.107420244868274,0,0.170453254832202,0.267096106940212,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,2.11300293513511,0,0,0,0.551365343546124,0,0.438450885253763,0,0,1.01455188481352,0.30982349809975,0,0,0.196498082026242,0.35667105148125,0,0,0,0,0,0,0,0,0.188287601553558,0.43050537267123,0,0,0,1.52234282769651,0.764637207142375,1.70894156152249,0.952927101831156,2.87953591160336,0.648473311192717,2.16012574895246,1.58625035258854,0,0,0.245040215981032,0.185803175125719,8.07907592668091,9.81757438208115,0.797131363644112,0,0.5745161103971,0.635020748171649,0,0,5.70586697582981,0.156679895773023,0,0,0.642352300414798,0.403599414382095,0,1.37402137902306,0,0,0,0,0,0,0,2.33150377598474,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0,0.111308705022906,0,0,0.19924798825107,2.48655523978033,0,0.102268682502155,0.492339221844278,0,0,0,0.511572370226872,0.394573622547734,0,1.11136990144637,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.230850775511391,0.341826167541004,0,0.269272933229316,0,0.31900115973192,0,0,6.13159789174419,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0.565412285735763,0,0,1.14994833854341,0.611030144933625,1.48260564340311,0.247127877893006,0.835375596043643,0,0,0,0.182454789215666,0,0,0,1.20990716048664,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,1.80784592624426,0,0,0,0.195551382734803,0.0801588202515337,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,8.94226116468806,0,0,0,0,0.7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| |||
|short_description=p1@uc003qhq.1 | |||
}} |
Revision as of 14:11, 22 January 2014
Short description: | p1@uc003qhq.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc003qhq.1_5end |
Coexpression cluster: | C1213_thymus_Dendritic_CD4_non_chronic_vein_CD133 |
Association with transcript: | 71bp_to_uc003qhq.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.47e-30 | 52 |
lymphocyte | 8.73e-30 | 53 |
common lymphoid progenitor | 8.73e-30 | 53 |
leukocyte | 1.44e-29 | 136 |
mature alpha-beta T cell | 9.39e-29 | 18 |
alpha-beta T cell | 9.39e-29 | 18 |
immature T cell | 9.39e-29 | 18 |
mature T cell | 9.39e-29 | 18 |
immature alpha-beta T cell | 9.39e-29 | 18 |
T cell | 3.49e-27 | 25 |
pro-T cell | 3.49e-27 | 25 |
hematopoietic stem cell | 2.06e-26 | 168 |
hematopoietic cell | 3.28e-25 | 177 |
nongranular leukocyte | 1.56e-20 | 115 |
CD8-positive, alpha-beta T cell | 8.28e-20 | 11 |
hematopoietic oligopotent progenitor cell | 8.54e-20 | 161 |
hematopoietic multipotent progenitor cell | 8.54e-20 | 161 |
hematopoietic lineage restricted progenitor cell | 7.92e-18 | 120 |
CD4-positive, alpha-beta T cell | 1.36e-12 | 6 |
B cell | 2.47e-08 | 14 |
granulocyte | 7.69e-08 | 8 |
plasmacytoid dendritic cell | 1.66e-07 | 3 |
naive T cell | 2.87e-07 | 3 |
blood cell | 3.26e-07 | 11 |
single nucleate cell | 9.30e-07 | 3 |
mononuclear cell | 9.30e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 3.41e-08 | 15 |
haemolymphatic fluid | 3.41e-08 | 15 |
organism substance | 3.41e-08 | 15 |
hematopoietic system | 7.10e-08 | 98 |
blood island | 7.10e-08 | 98 |
hemolymphoid system | 7.16e-08 | 108 |
hemopoietic organ | 3.25e-07 | 7 |
immune organ | 3.25e-07 | 7 |