FFCP PHASE1:Hg19::chr6:112575917..112575931,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3910 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |||
|TSSclassifier=strong | |||
|UniProt=Q16363,E5RHF3 | |||
|association_with_transcript=0bp_to_ENST00000230538,ENST00000519932_5end | |||
|description=CAGE_peak_4_at_LAMA4_5end | |||
|id=chr6:112575917..112575931,- | |||
|ontology_enrichment_celltype=CL:0000222!5.38e-30!119;CL:0000055!8.80e-20!180;CL:0000115!8.27e-19!35;CL:0002139!1.39e-18!24;CL:0000187!1.52e-16!54;CL:0000183!1.58e-16!59;CL:0000213!3.99e-16!57;CL:0000215!3.99e-16!57;CL:0000680!6.07e-16!57;CL:0000056!6.07e-16!57;CL:0000355!6.07e-16!57;CL:0000071!2.22e-14!18;CL:0002546!2.22e-14!18;CL:0002078!1.14e-13!44;CL:0000192!2.09e-13!42;CL:0000514!2.09e-13!42;CL:0000393!2.30e-13!60;CL:0000211!2.30e-13!60;CL:0000057!2.26e-12!75;CL:0000359!3.41e-12!32;CL:0000220!5.07e-09!246;CL:0002321!1.17e-08!248;CL:1000413!3.98e-08!9;CL:0002494!7.36e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.27e-26;24!CL:0000115;1.20e-22;36!CL:0000071;1.78e-20;18!CL:0000359;6.93e-14;32!CL:0002078;4.09e-13;45!CL:0000213;6.22e-13;58!CL:0000215;6.22e-13;58!CL:1000413;2.55e-11;9!CL:0000192;3.67e-10;43!CL:0002494;4.23e-09;16!CL:0000187;8.48e-09;55!CL:0002543;1.28e-08;6!CL:0002544;4.27e-08;6!CL:0002138;1.08e-07;6!CL:0000393;3.66e-07;61!CL:0000211;3.66e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,7.11e-34,121;CL:0000115,4.40e-27,36;CL:0002139,9.88e-27,24;CL:0000071,1.67e-20,18;CL:0002546,1.67e-20,18;CL:0000213,1.86e-20,58;CL:0000215,1.86e-20,58;CL:0002078,2.79e-20,45;CL:0000187,2.31e-16,55;CL:0000680,7.09e-15,58;CL:0000056,7.09e-15,58;CL:0000355,7.09e-15,58;CL:0000192,1.17e-14,43;CL:0000514,1.17e-14,43;CL:0000359,1.24e-14,32;CL:0000393,1.50e-13,61;CL:0000211,1.50e-13,61;CL:1000413,2.90e-11,9;CL:0002321,1.05e-10,250;CL:0002494,4.94e-09,16;CL:0002543,1.28e-08,6;CL:0002544,4.82e-08,6;CL:0005020,9.00e-08,6;CL:0002138,9.00e-08,6;CL:0005022,9.00e-08,6;CL:0000057,1.57e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002546;1.78e-20;18!CL:0000514;3.67e-10;43!CL:0000222;4.11e-10;121!CL:0000355;7.88e-08;58!CL:0005022;1.08e-07;6 | |||
|ontology_enrichment_disease=DOID:2394!5.28e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.27e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.78e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!3.34e-37!79;UBERON:0007798!3.34e-37!79;UBERON:0000055!2.51e-33!69;UBERON:0004872!2.05e-32!84;UBERON:0001009!2.08e-31!113;UBERON:0004535!3.65e-31!110;UBERON:0001981!2.24e-29!60;UBERON:0007500!2.24e-29!60;UBERON:0004537!2.24e-29!60;UBERON:0006965!2.24e-29!60;UBERON:0003914!3.98e-25!118;UBERON:0001637!2.09e-21!42;UBERON:0003509!2.09e-21!42;UBERON:0004572!2.09e-21!42;UBERON:0000490!3.70e-20!138;UBERON:0004573!6.16e-17!33;UBERON:0004571!6.16e-17!33;UBERON:0001134!4.49e-16!61;UBERON:0002036!4.49e-16!61;UBERON:0003082!4.49e-16!61;UBERON:0002385!6.60e-16!63;UBERON:0001015!6.60e-16!63;UBERON:0000383!6.60e-16!63;UBERON:0000477!8.93e-16!286;UBERON:0004290!2.92e-15!70;UBERON:0004111!3.14e-15!241;UBERON:0001986!2.22e-14!18;UBERON:0004638!2.22e-14!18;UBERON:0004852!2.22e-14!18;UBERON:0000119!4.99e-14!312;UBERON:0000914!8.55e-14!83;UBERON:0002329!8.55e-14!83;UBERON:0003077!8.55e-14!83;UBERON:0003059!8.55e-14!83;UBERON:0007282!8.55e-14!83;UBERON:0009618!8.55e-14!83;UBERON:0007285!8.55e-14!83;UBERON:0000487!2.37e-13!22;UBERON:0000483!3.55e-13!309;UBERON:0000025!7.36e-13!194;UBERON:0000947!6.53e-12!21;UBERON:0010191!6.53e-12!21;UBERON:0000486!2.15e-11!82;UBERON:0005256!2.39e-11!143;UBERON:0006914!3.71e-11!25;UBERON:0002100!3.03e-09!216;UBERON:0000475!7.30e-09!365;UBERON:0007100!1.44e-08!27;UBERON:0000948!1.86e-08!24;UBERON:0005498!1.86e-08!24;UBERON:0004140!1.86e-08!24;UBERON:0009881!1.86e-08!24;UBERON:0004141!1.86e-08!24;UBERON:0003084!1.86e-08!24;UBERON:0007005!1.86e-08!24;UBERON:0004139!1.86e-08!24;UBERON:0004291!1.86e-08!24;UBERON:0003915!3.98e-08!9;UBERON:0004700!3.98e-08!9;UBERON:0001917!3.98e-08!9;UBERON:0000468!9.36e-08!659;UBERON:0000467!2.78e-07!625;UBERON:0000480!3.75e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.52e-21;42!UBERON:0003509;3.52e-21;42!UBERON:0004572;3.52e-21;42!UBERON:0004573;4.30e-21;33!UBERON:0004571;4.30e-21;33!UBERON:0000055;9.33e-21;65!UBERON:0004638;1.78e-20;18!UBERON:0001986;1.78e-20;18!UBERON:0004852;1.78e-20;18!UBERON:0000487;8.28e-20;22!UBERON:0007500;3.15e-19;56!UBERON:0001981;3.15e-19;56!UBERON:0004537;3.15e-19;56!UBERON:0006914;1.84e-16;25!UBERON:0002049;3.17e-15;75!UBERON:0007798;3.17e-15;75!UBERON:0000947;1.34e-14;21!UBERON:0010191;1.34e-14;21!UBERON:0000490;2.46e-13;33!UBERON:0003914;3.73e-13;74!UBERON:0004535;1.62e-11;109!UBERON:0003915;2.55e-11;9!UBERON:0004700;2.55e-11;9!UBERON:0001917;2.55e-11;9!UBERON:0001009;1.59e-10;112!UBERON:0000948;1.08e-09;22!UBERON:0000025;3.44e-08;93!UBERON:0007100;6.34e-08;25!UBERON:0001135;1.57e-07;15!UBERON:0003513;1.97e-07;7!UBERON:0001473;5.22e-07;8!UBERON:0004536;5.22e-07;8!UBERON:0006558;5.22e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,3.10e-41,68;UBERON:0004872,5.93e-41,83;UBERON:0002049,9.54e-41,78;UBERON:0007798,9.54e-41,78;UBERON:0004535,1.99e-38,109;UBERON:0001009,1.19e-36,112;UBERON:0007500,2.77e-36,59;UBERON:0001981,2.77e-36,59;UBERON:0004537,2.77e-36,59;UBERON:0006965,2.77e-36,59;UBERON:0003914,9.97e-35,117;UBERON:0001637,4.10e-28,42;UBERON:0003509,4.10e-28,42;UBERON:0004572,4.10e-28,42;UBERON:0000490,2.27e-24,148;UBERON:0004573,1.33e-22,33;UBERON:0004571,1.33e-22,33;UBERON:0004638,1.67e-20,18;UBERON:0001986,1.67e-20,18;UBERON:0004852,1.67e-20,18;UBERON:0000487,7.89e-20,22;UBERON:0007503,5.53e-17,78;UBERON:0006914,1.76e-16,25;UBERON:0002385,4.43e-15,64;UBERON:0001015,4.43e-15,64;UBERON:0000383,4.43e-15,64;UBERON:0001134,6.04e-15,62;UBERON:0002036,6.04e-15,62;UBERON:0003082,6.04e-15,62;UBERON:0000947,9.05e-15,21;UBERON:0010191,9.05e-15,21;UBERON:0000926,1.08e-14,315;UBERON:0004120,1.08e-14,315;UBERON:0006603,1.08e-14,315;UBERON:0004111,1.77e-14,240;UBERON:0005256,1.96e-14,122;UBERON:0002329,3.11e-14,71;UBERON:0003059,3.11e-14,71;UBERON:0007282,3.11e-14,71;UBERON:0004290,3.11e-14,71;UBERON:0009618,3.11e-14,71;UBERON:0003077,7.51e-14,72;UBERON:0007285,7.51e-14,72;UBERON:0007524,1.77e-13,73;UBERON:0000025,2.36e-13,192;UBERON:0000119,2.28e-12,309;UBERON:0000483,2.17e-11,306;UBERON:0003915,2.90e-11,9;UBERON:0004700,2.90e-11,9;UBERON:0001917,2.90e-11,9;UBERON:0000948,8.15e-11,24;UBERON:0005498,8.15e-11,24;UBERON:0004140,8.15e-11,24;UBERON:0009881,8.15e-11,24;UBERON:0004141,8.15e-11,24;UBERON:0003084,8.15e-11,24;UBERON:0007005,8.15e-11,24;UBERON:0004139,8.15e-11,24;UBERON:0004291,8.15e-11,24;UBERON:0000486,2.52e-10,83;UBERON:0003081,6.46e-10,203;UBERON:0003104,9.10e-10,160;UBERON:0009142,9.10e-10,160;UBERON:0002100,1.40e-09,199;UBERON:0007100,5.66e-09,27;UBERON:0001135,6.41e-08,15;UBERON:0003513,1.91e-07,7;UBERON:0001473,4.93e-07,8;UBERON:0004536,4.93e-07,8;UBERON:0006558,4.93e-07,8 | |||
|phase1_expression=0.54503513781167,1.07050261945492,2.25527046553554,2.00146596706261,0.446961094427288,0,0,2.52687949370732,0.261185628199839,21.8703203486343,2.79120467188971,0,0,0,0.994192127183747,1.34465029290355,1.80808358407193,1.46062018077475,2.43966399395253,0.123121058076788,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.694892620815,3.35350429851818,3.32442660793179,0,1.00267582127178,0.579386075843295,0,0.486634870302636,0.189069634328136,0.665188192387692,0.966182642624386,0.72038491523742,0,0,0,0,0,0,0,0,14.7084181451362,12.9035189265919,18.3984465852025,14.1326985481002,11.7459842138774,12.9305479711832,9.40477349415648,21.7070077702236,19.9229107104558,26.7776490211736,1.61131726843659,4.56163263431108,8.7862340717341,4.04429388380456,24.3042584364528,26.879218213508,28.0661715782712,31.7564374962969,19.9311628705648,13.2897192339538,30.594691236378,0,0,0,0,3.79891534993739,3.97227542439656,6.3104056564739,5.32002573297536,1.68203280042692,0,0.74000264525148,11.2035972743916,4.17603083416033,4.7403951902903,3.93529311876822,9.79499071615998,0.468642863667593,3.43376084513353,4.56377457235559,2.39117888882882,0,0.323745888736263,0,1.42907919878425,0.122834317311768,0.723280468230358,0,1.48360157567134,0.910161361938026,2.15585442544872,0.168336113954066,0.250237039743928,0.831192346452549,0.438977620880838,2.14541457059314,0.751190294532984,2.04177929688038,0.358779271377724,1.2813443329114,4.23863802319124,2.70081986475962,1.44273540933814,0.772921620136887,1.30281799432113,1.18143432568886,0.487185025805993,1.51460264546469,2.20919756741518,0.969876340912871,0.710019185033229,0,0.339121184620975,0,0,0,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,3.69077727312324,7.01208869017229,0,1.47008711385542,0,0,1.18157981336281,0,0,2.57351715447788,0,0,0,0,0,1.03993478527958,5.77325368101093,0,2.23076519048061,9.96128489551409,2.77791307545966,6.46864117597634,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.205654985406647,0,0.571652865261156,1.45770409648969,1.30788020649984,8.72725601269305,1.93907573636667,0,5.917119267892,1.59562869950922,0,0.514414748524284,0,2.66422179016099,6.86294369559108,0,0.823240336780769,2.93162565864362,7.10783897485092,0.791951872933429,6.63166629531089,7.84380112740265,13.3963808183956,0,0,0,0.718874566474748,0,0,0.723906533337896,0.205476322550383,0,0,0,0,0,1.01637849688985,1.30139853857622,0,0.167516265334349,0,0,0,0,0.49076596687656,0,0,0.415941723061614,0.178428988797162,0.315404830067869,1.17141414992713,0.300946099727719,0,0,1.32845119707087,0,1.99832313276591,0.391602314925481,0.343143423810856,0,0,0,0,0,0.30239029332968,1.48864684691266,0.920771839728375,0.280660094433074,2.05022638809122,0.511707249066704,1.60853921143608,0,3.39261326365842,3.55123450626254,2.46381468041427,8.82732529612156,0.929683027679674,0,0,0,5.51109351190112,2.36718518408732,2.09799063935079,0,0,0,0,0,7.96133688496276,6.12337338995456,15.9777777915583,23.1340879035434,0.541892875087706,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,6.42735719376638,0.773365746336976,4.1593126620954,0.767518373630648,0.689182862422653,1.6113036730241,1.16013355131383,3.32383846922794,0.534192213880424,0,0,0.127612712494584,0,0.464845549297286,4.40737285562896,2.7881490806424,8.3169066647544,2.12922412126809,2.60979897622522,5.74505079222152,2.57624796135584,1.116475108079,0.632758849437452,4.76575484809562,0,0.42793898803392,8.27328444607436,4.70969184119538,1.61885211824983,1.64722217841633,2.82749765629647,3.03273722359974,0,2.10629228119491,0.975267478179181,4.87426979262569,2.11300293513511,0.9554993798559,3.81794666275024,3.39024349860728,6.61638412255349,7.96126770289464,2.63070531152258,0,1.9676842561399,2.02910376962704,0.6196469961995,1.97186921772569,0.286822704408103,0,5.7067368237,1.06428319221179,0.211107635297664,0,0.75894634753143,0.349934720244983,0,0.670302275535787,0,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,2.67140892054974,0,0,0.597743964753209,0.552567831062295,0,0,0,0,0.539210106883961,0,0,2.17015492401254,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0.1137934482855,0,0,0,0,0.520874984799877,0,0.241192877250816,0,0.221158519862449,0.295547618953547,0.438770794307945,0,0,0.538651809526579,1.70913083770502,0,0,0,0,0.824378340616761,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0.353830258013357,0,0,0,0,0.067401132980677,3.21031058919516,0,0,0,0,0.394584402849391,2.41981432097328,0.91821828489147,0.252746318513952,0.901940516486955,2.59220478493118,0.664653872707185,4.96487933813248,0.941798755221676,0,0.853828638089378,0,0,0.489961987071888,0,0.698906672968121,0,0,0,0,0.387956065953678,0,0.677942222341597,1.50746117111426,3.97429223405979,0.126621591911757,0,0.480952921509202,1.28071796843612,0,0,0,0,0.432164393964449,0,0,0.407712618220842,0.418411385249333,0.407992870545287,0,0,0.273810757783986,0,1.28929632425987,0,2.23425921017803,0.687481272035051,1.43574604915363,0.399358000997982,0.429226048136571,0.669514372325618,2.14987111957524,4.68389848605125,0,0,0,0,0,0.931406652723629,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,1.10154635083496,0,0,0,0,1.32418394073086,0,3.25799761052228,12.963322368019,3.91904832131291,0,0,0,1.13312091520126,0,0,0.129282956361551,0.13223260174269,0,0,1.17466153824464,1.10043013569766,0.414239055347196,0.496166021811951,0,0,0,2.1760712134779,1.2534494701135,0.306345576763462,0.983617892129413,0,0,0.122026264901963,0,0,0.110929051536852,0.310482014706917,0,0.124980407962107,5.15606999641603,1.7127920012698,10.8222277061159,0,0,1.49254802886874,1.63599316893057,1.10961172300523,0.568209015825267,1.0062716070103,0.889811221596536,3.8902811627477,4.38569678913393,3.73049281398673,5.17493024963719,5.41609008356588,4.04822800947244,2.79473322377267,2.48823724704513,5.58267600571789,1.5652351854352,4.80824348791099,7.61610424337591,4.06870733204662,12.0020115073689,3.7593694964871,18.0973166352613,7.5638218852737,0,1.03018711554838,0.336749488765919,0,0.192619830407303,0,0,1.13352962756136,2.08370226891451,0,0,0.617602894321944,0.657852148736121,0.530067437837643,0.38582807654183,3.7167336943676,0,0,0.911579868532147,0.414775308455192,0,0,0,0.327609848846413,5.65277690133554,0,0,0,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,1.27201740261367,0,0,0,2.1437183414724,0.128458450192919,0,0.159633859057151,0.205116364240755,0.504143392443436,0,0.322951291263702,0,0,0,0,0.115525666150338,1.52552838186867,4.8325194824207,0,0.676892955143315,0.20170506870352,0,0,0,0,0.472763092328763,0,0.206686796501184,0.19024743058172,0,0.548257766857182,0,0,0.127762427639595,0,0,0.606965604236632,0,3.45939243634291,0,0.857440047187092,0.0679697329768317,0.131545547125698,0,0,0.706437835654626,0,0,2.73947616152849,0,0,0.428859265059938,0,2.78979420883501,0.347716544605159,0.801711364730253,0,0.3414369541879,0,0,0.354996002191696,0.340853619036631,0.423387050190929,0,0,0,0,0,0,0,0.410651227424988,1.1598144313382,2.4285549652957,0.701818390386317,0,0,0,0,2.41540549706678,0,0.655678681511872,0.940634592723046,2.69663153929296,0,0.196308467114945,0,0.8453114551668,0.679708458751268,0,0.193373663920732,0,0,0,0,0.730336388246517,0,0.286679166302903,0,0.271965960763659,0.872701380680755,1.0580536810308,0.743990036333503,0.462175628631418,0.432626562123789,0,0,0.126698501011437,0,0,0,0,0.303114792872958,1.07185652062471,0,0.103432995861895,0.213233981900981,2.61870874610114,0.0645889098360061,0.124149428591716,0.897054900644907,0.190941474834495,1.21270313374932,0.435433495793923,2.05339980651169,0.336760265072938,0.502055437748735,1.66330178273007,0.651226148887796,0.960546112899439,5.7921684686082,4.94038611586228,2.34640942403454,0.977931553462932,2.03448089157869,0,0.805095174364105,0 | |||
|short_description=p4@LAMA4 | |||
}} |
Revision as of 13:27, 22 January 2014
Short description: | p4@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAMA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000230538, ENST00000519932_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | Q16363E5RHF3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 7.11e-34 | 121 |
endothelial cell | 4.40e-27 | 36 |
endothelial cell of vascular tree | 9.88e-27 | 24 |
blood vessel endothelial cell | 1.67e-20 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.67e-20 | 18 |
lining cell | 1.86e-20 | 58 |
barrier cell | 1.86e-20 | 58 |
meso-epithelial cell | 2.79e-20 | 45 |
muscle cell | 2.31e-16 | 55 |
muscle precursor cell | 7.09e-15 | 58 |
myoblast | 7.09e-15 | 58 |
multi-potent skeletal muscle stem cell | 7.09e-15 | 58 |
smooth muscle cell | 1.17e-14 | 43 |
smooth muscle myoblast | 1.17e-14 | 43 |
vascular associated smooth muscle cell | 1.24e-14 | 32 |
electrically responsive cell | 1.50e-13 | 61 |
electrically active cell | 1.50e-13 | 61 |
endothelial cell of artery | 2.90e-11 | 9 |
embryonic cell | 1.05e-10 | 250 |
cardiocyte | 4.94e-09 | 16 |
vein endothelial cell | 1.28e-08 | 6 |
aortic endothelial cell | 4.82e-08 | 6 |
lymphangioblast | 9.00e-08 | 6 |
endothelial cell of lymphatic vessel | 9.00e-08 | 6 |
vascular lymphangioblast | 9.00e-08 | 6 |
fibroblast | 1.57e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.78e-11 | 14 |