FFCP PHASE1:Hg19::chr6:112575733..112575755,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3910 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |||
|TSSclassifier=strong | |||
|UniProt=E5RFD7,E9PBW6,E9PBR9 | |||
|association_with_transcript=0bp_to_ENST00000243219,ENST00000368639,ENST00000424408,ENST00000454881_5end | |||
|coexpression_cluster_id=C2836 | |||
|description=CAGE_peak_2_at_LAMA4_5end | |||
|id=chr6:112575733..112575755,- | |||
|ontology_enrichment_celltype=CL:0000055!6.79e-31!180;CL:0000222!5.52e-26!119;CL:0000057!9.30e-18!75;CL:0000187!3.59e-16!54;CL:0000680!9.63e-16!57;CL:0000056!9.63e-16!57;CL:0000355!9.63e-16!57;CL:0000183!2.53e-15!59;CL:0000393!3.11e-14!60;CL:0000211!3.11e-14!60;CL:0002139!6.02e-14!24;CL:0000192!5.98e-13!42;CL:0000514!5.98e-13!42;CL:0000213!2.05e-11!57;CL:0000215!2.05e-11!57;CL:0000115!5.16e-11!35;CL:0000071!8.19e-11!18;CL:0002546!8.19e-11!18;CL:0000359!1.08e-10!32;CL:0002078!6.87e-10!44;CL:0002620!1.12e-09!23;CL:0000220!6.88e-09!246;CL:0002321!1.06e-08!248;CL:0000136!1.39e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.36e-14;24!CL:0000071;3.99e-11;18!CL:0000359;2.32e-10;32!CL:0002620;5.53e-10;23!CL:0000192;5.91e-10;43!CL:0000115;7.42e-10;36!CL:0000187;1.95e-09;55!CL:0000057;6.03e-08;73!CL:0000393;6.46e-08;61!CL:0000211;6.46e-08;61!CL:0000213;2.67e-07;58!CL:0000215;2.67e-07;58!CL:0002078;4.20e-07;45!CL:0000136;4.25e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.09e-26,121;CL:0000057,4.61e-19,76;CL:0000187,1.17e-16,55;CL:0000680,3.16e-16,58;CL:0000056,3.16e-16,58;CL:0000355,3.16e-16,58;CL:0002139,2.33e-14,24;CL:0000393,7.17e-14,61;CL:0000211,7.17e-14,61;CL:0000192,2.53e-13,43;CL:0000514,2.53e-13,43;CL:0000115,9.52e-12,36;CL:0000213,1.99e-11,58;CL:0000215,1.99e-11,58;CL:0000071,4.03e-11,18;CL:0002546,4.03e-11,18;CL:0000359,1.14e-10,32;CL:0002620,5.99e-10,23;CL:0002078,8.98e-10,45;CL:0000136,8.74e-08,15;CL:0002321,3.66e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002546;3.99e-11;18!CL:0000514;5.91e-10;43!CL:0000355;1.06e-08;58!CL:0000222;1.59e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.39e-27!79;UBERON:0007798!1.39e-27!79;UBERON:0000055!2.69e-24!69;UBERON:0004872!1.21e-23!84;UBERON:0001981!7.86e-22!60;UBERON:0007500!7.86e-22!60;UBERON:0004537!7.86e-22!60;UBERON:0006965!7.86e-22!60;UBERON:0001009!3.32e-21!113;UBERON:0004535!4.31e-21!110;UBERON:0004290!7.03e-18!70;UBERON:0000914!8.42e-18!83;UBERON:0002329!8.42e-18!83;UBERON:0003077!8.42e-18!83;UBERON:0003059!8.42e-18!83;UBERON:0007282!8.42e-18!83;UBERON:0009618!8.42e-18!83;UBERON:0007285!8.42e-18!83;UBERON:0003914!2.23e-17!118;UBERON:0001637!1.41e-16!42;UBERON:0003509!1.41e-16!42;UBERON:0004572!1.41e-16!42;UBERON:0002385!2.12e-16!63;UBERON:0001015!2.12e-16!63;UBERON:0000383!2.12e-16!63;UBERON:0000477!2.20e-16!286;UBERON:0001134!4.57e-16!61;UBERON:0002036!4.57e-16!61;UBERON:0003082!4.57e-16!61;UBERON:0000475!5.58e-16!365;UBERON:0004111!1.17e-15!241;UBERON:0000490!2.29e-15!138;UBERON:0000119!3.62e-15!312;UBERON:0004573!5.95e-15!33;UBERON:0004571!5.95e-15!33;UBERON:0000483!1.99e-14!309;UBERON:0000486!2.05e-14!82;UBERON:0005256!2.23e-13!143;UBERON:0000468!1.48e-12!659;UBERON:0000025!2.08e-12!194;UBERON:0002100!2.24e-11!216;UBERON:0000481!6.02e-11!347;UBERON:0001986!8.19e-11!18;UBERON:0004638!8.19e-11!18;UBERON:0004852!8.19e-11!18;UBERON:0000467!1.20e-10!625;UBERON:0000480!1.98e-10!626;UBERON:0000947!9.14e-10!21;UBERON:0010191!9.14e-10!21;UBERON:0006914!2.28e-09!25;UBERON:0000487!4.54e-09!22;UBERON:0002199!4.86e-08!45;UBERON:0002416!4.86e-08!45;UBERON:0003104!9.96e-08!238;UBERON:0009142!9.96e-08!238;UBERON:0000948!1.13e-07!24;UBERON:0005498!1.13e-07!24;UBERON:0004140!1.13e-07!24;UBERON:0009881!1.13e-07!24;UBERON:0004141!1.13e-07!24;UBERON:0003084!1.13e-07!24;UBERON:0007005!1.13e-07!24;UBERON:0004139!1.13e-07!24;UBERON:0004291!1.13e-07!24;UBERON:0007100!1.30e-07!27;UBERON:0003102!1.75e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.89e-14;33!UBERON:0004571;1.89e-14;33!UBERON:0001637;4.51e-13;42!UBERON:0003509;4.51e-13;42!UBERON:0004572;4.51e-13;42!UBERON:0000055;4.45e-12;65!UBERON:0007500;2.32e-11;56!UBERON:0001981;2.32e-11;56!UBERON:0004537;2.32e-11;56!UBERON:0002049;3.29e-11;75!UBERON:0007798;3.29e-11;75!UBERON:0004638;3.99e-11;18!UBERON:0001986;3.99e-11;18!UBERON:0004852;3.99e-11;18!UBERON:0000947;4.99e-10;21!UBERON:0010191;4.99e-10;21!UBERON:0000487;1.83e-09;22!UBERON:0006914;1.96e-09;25!UBERON:0002385;4.90e-08;31!UBERON:0001015;4.90e-08;31!UBERON:0000383;4.90e-08;31!UBERON:0000948;2.33e-07;22!UBERON:0004535;2.40e-07;109!UBERON:0007100;2.64e-07;25!UBERON:0001009;5.64e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.69e-27,78;UBERON:0007798,1.69e-27,78;UBERON:0000055,3.49e-24,68;UBERON:0004872,2.14e-23,83;UBERON:0001009,7.19e-22,112;UBERON:0004535,9.36e-22,109;UBERON:0007500,1.44e-21,59;UBERON:0001981,1.44e-21,59;UBERON:0004537,1.44e-21,59;UBERON:0006965,1.44e-21,59;UBERON:0007524,1.85e-18,73;UBERON:0002329,1.90e-18,71;UBERON:0003059,1.90e-18,71;UBERON:0007282,1.90e-18,71;UBERON:0004290,1.90e-18,71;UBERON:0009618,1.90e-18,71;UBERON:0003077,3.63e-18,72;UBERON:0007285,3.63e-18,72;UBERON:0007503,3.98e-18,78;UBERON:0000490,1.54e-17,148;UBERON:0001637,4.46e-17,42;UBERON:0003509,4.46e-17,42;UBERON:0004572,4.46e-17,42;UBERON:0003914,5.46e-17,117;UBERON:0002385,6.49e-17,64;UBERON:0001015,6.49e-17,64;UBERON:0000383,6.49e-17,64;UBERON:0001134,1.44e-16,62;UBERON:0002036,1.44e-16,62;UBERON:0003082,1.44e-16,62;UBERON:0004573,2.13e-15,33;UBERON:0004571,2.13e-15,33;UBERON:0004111,1.62e-14,240;UBERON:0000486,2.10e-14,83;UBERON:0005256,4.10e-14,122;UBERON:0000119,6.99e-14,309;UBERON:0000483,3.68e-13,306;UBERON:0003104,1.30e-12,160;UBERON:0009142,1.30e-12,160;UBERON:0004638,4.03e-11,18;UBERON:0001986,4.03e-11,18;UBERON:0004852,4.03e-11,18;UBERON:0000025,5.15e-11,192;UBERON:0000947,4.87e-10,21;UBERON:0010191,4.87e-10,21;UBERON:0000487,1.84e-09,22;UBERON:0006914,1.98e-09,25;UBERON:0002100,5.12e-09,199;UBERON:0002199,1.75e-08,46;UBERON:0002416,1.75e-08,46;UBERON:0000948,7.06e-08,24;UBERON:0005498,7.06e-08,24;UBERON:0004140,7.06e-08,24;UBERON:0009881,7.06e-08,24;UBERON:0004141,7.06e-08,24;UBERON:0003084,7.06e-08,24;UBERON:0007005,7.06e-08,24;UBERON:0004139,7.06e-08,24;UBERON:0004291,7.06e-08,24;UBERON:0007100,8.15e-08,27;UBERON:0000926,3.03e-07,315;UBERON:0004120,3.03e-07,315;UBERON:0006603,3.03e-07,315;UBERON:0003102,6.30e-07,99 | |||
|phase1_expression=15.8060189965384,36.3970890614671,57.5093968711562,23.01685862122,73.7485805805025,16.574431957907,43.0609792886128,51.8010296210001,105.257808164535,10.3208253330634,2.09340350391728,0,0,25.9909341216098,46.7270299776361,39.6671836406547,40.9832279056304,35.7851944289813,26.8363039334779,15.0207690853681,10.2000345622127,12.2247341376454,26.3337108160572,21.7630335865886,15.4417446701607,0,0,0,0.393364276848904,0,0,0.919421224478927,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,148.722188451517,25.4866326687382,28.7690764147943,49.5171638766856,44.6190740465942,46.2060395485028,20.6774346233286,31.1446316993687,7.27918092163323,8.42571710357743,12.4725395684239,10.6093051153147,0,0,0,0,0,0,0,0,64.001495172079,61.936890847641,60.749587781329,63.3144894954891,51.1789312176085,49.2461295072721,39.5000486754572,139.028216433099,118.825931737361,223.258648714035,90.2337670324489,63.8628568803551,118.126035853314,74.6356053102113,62.3809299868955,74.2973739323544,61.5210480995705,55.8552943197278,53.6608231130591,63.6007991910646,76.028723731119,0,0,0,4.96971951695318,44.8272011292612,89.7734245913624,230.329806461297,48.5895683611749,15.1382952038423,17.0798393167528,8.14002909776628,138.488910752896,38.2578308677914,41.8462471970454,74.1651395460164,85.8502127475198,12.1847144553574,76.1670587465982,46.2082175451004,71.1375719426573,7.86811140913225,5.50368010851647,5.05622904128095,42.2599134497629,4.17636678860011,41.3303124703062,41.5801000048719,33.6283023818837,20.9337113245746,19.4026898290384,5.21841953257605,10.1346001096291,53.4733742884473,26.7776348737311,28.5033650093088,41.4657042582207,11.002921766522,65.4772170264346,92.2567919696211,105.118222975143,122.437167202436,90.8923307883031,80.6414890342819,57.5101086064613,72.5738228637445,45.9902664360858,119.65360899171,121.413816309193,81.3079665798624,69.5818801332564,27.8075791108287,22.5515587772949,0,0,0.286804595389004,0.243947412259191,0.397589304964456,1.51052125730374,2.17688215532278,0.756962552626885,0,26.5964204960687,54.0322388082024,11.0507937081984,36.2206983864944,28.1532997851138,0,0,0,0,0,0,0.134831308160164,0,0,20.6683527294901,9.81692416624121,7.8199062152966,2.94017422771084,1.26755034821831,0,1.18157981336281,0,0,40.8331388510491,0,0,0,0.0925884451585296,0,6.23960871167747,34.6395220860656,3.82570336417754,36.7489212958122,57.6022126566685,32.8719713929394,48.8953171242918,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,1.24396869324463,0.432359860250884,0.6312121671319,1.07946420296687,0.763976851116555,0,17.1072446022705,2.57068731758309,1.8020583470635,5.71652865261156,33.4150631349175,33.5689253001626,47.8899006410804,9.69537868183333,75.1078536288953,33.81211010224,21.8069255599594,16.6411899058186,5.65856223376713,0,10.656887160644,75.7783366388182,3.7983512377401,2.46972101034231,49.5119000126477,80.3185804158154,7.91951872933429,61.7950722972151,47.0628067644159,52.585793361762,0,0,0,14.8567410404781,18.3779097334582,2.85273810081437,4.34343920002738,13.1504846432245,1.79060963239896,0,0,0,0,17.53252907135,3.90419561572865,2.31986643833309,4.69045542936177,1.27587750330633,0,0,0,32.5132453055721,19.5066503213274,27.669032417373,41.3862014446306,7.31558854068363,20.0282067093097,33.2681618579305,9.02838299183157,2.27407504055985,7.24311499047534,12.6202863721733,5.7154442247928,82.800084588083,20.363320376125,9.95115929051482,0,0,0,0,0,2.11673205330776,20.0967324333209,49.4147553987561,29.7499700099058,59.0721478068781,33.2609711893357,26.219189146408,7.42090332224955,33.9261326365842,47.5865423839181,68.3297938034892,60.2335137853001,42.881629651725,0,0,0.0920809889358963,38.233211238814,20.576301984759,50.8762730042566,0,1.07821471946181,0,1.46139224653261,0.633309773357254,42.0813521062317,29.9364921286668,23.9666666873375,58.6063560223099,0,0.501689773854853,4.58777291481069,1.66215201785745,0.223874754722178,0,0,3.59030175162945,1.31205858279882,1.62689197332152,11.2314702696017,5.03632056500889,7.17832649309115,1.14853107599234,0.650060246036521,77.1282863251966,21.1708873059747,57.7682314179916,59.7129294684644,10.0620697913707,62.0889015338622,38.5744405811848,37.0735829260039,36.7702307221025,0.165284915360978,0,0.127612712494584,0.2023155617111,8.36721988735114,135.684121484006,57.8540934233298,55.1380108515199,31.9383618190213,52.1959795245044,97.4805392486619,32.775599063916,56.1959137733098,34.8017367190598,63.8611149644813,8.70052490458535,37.658630946985,135.236380368523,37.677534729563,46.7668389716618,52.1620356498504,42.5302772467928,34.1688393858904,17.4361353290309,52.2360485736337,18.0424483463148,78.4757436612736,48.5990675081075,28.664981395677,44.1184947695584,80.2357628003724,76.0884174093651,88.2373837070822,60.0677712797655,16.7844904937339,59.6864224362436,15.8270094030909,9.6045284410922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| |||
|short_description=p2@LAMA4 | |||
}} |
Revision as of 13:27, 22 January 2014
Short description: | p2@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAMA4_5end |
Coexpression cluster: | C2836_Fibroblast_Endothelial_mature_Cardiac_Smooth_mesenchymal_Adipocyte |
Association with transcript: | 0bp_to_ENST00000243219, ENST00000368639, ENST00000424408, ENST00000454881_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | E5RFD7E9PBW6E9PBR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.09e-26 | 121 |
fibroblast | 4.61e-19 | 76 |
muscle cell | 1.17e-16 | 55 |
muscle precursor cell | 3.16e-16 | 58 |
myoblast | 3.16e-16 | 58 |
multi-potent skeletal muscle stem cell | 3.16e-16 | 58 |
endothelial cell of vascular tree | 2.33e-14 | 24 |
electrically responsive cell | 7.17e-14 | 61 |
electrically active cell | 7.17e-14 | 61 |
smooth muscle cell | 2.53e-13 | 43 |
smooth muscle myoblast | 2.53e-13 | 43 |
endothelial cell | 9.52e-12 | 36 |
lining cell | 1.99e-11 | 58 |
barrier cell | 1.99e-11 | 58 |
blood vessel endothelial cell | 4.03e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.03e-11 | 18 |
vascular associated smooth muscle cell | 1.14e-10 | 32 |
skin fibroblast | 5.99e-10 | 23 |
meso-epithelial cell | 8.98e-10 | 45 |
fat cell | 8.74e-08 | 15 |
embryonic cell | 3.66e-07 | 250 |