FFCP PHASE1:Hg19::chr5:147582348..147582361,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=404203 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29486 | |||
|TSSclassifier=strong | |||
|UniProt=D6RGX9,E0X656,Q6UWN8 | |||
|association_with_transcript=0bp_to_ENST00000514389,NM_001195290,NM_205841_5end | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_5_at_SPINK6_5end | |||
|id=chr5:147582348..147582361,+ | |||
|ontology_enrichment_celltype=CL:0002159!4.32e-25!13;CL:0002166!2.63e-13!3;CL:0002077!7.14e-11!33;CL:0000317!9.54e-10!2;CL:1000448!9.54e-10!2;CL:0002308!9.54e-10!2;CL:0002140!9.54e-10!2;CL:0000066!1.56e-09!254;CL:0000575!1.81e-09!2;CL:0000362!7.10e-09!8;CL:0000622!2.31e-08!5;CL:0000221!5.74e-08!71;CL:0000154!4.97e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002159;1.05e-24;14!CL:0000317;1.35e-20;2!CL:1000448;1.35e-20;2!CL:0002308;1.35e-20;2!CL:0002140;1.35e-20;2!CL:0000622;3.51e-18;5!CL:0000362;1.20e-17;9!CL:0000154;2.94e-15;6!CL:0000150;2.30e-10;9!CL:0002077;1.67e-09;34!CL:0000312;9.20e-09;5!CL:0000240;1.92e-07;6!CL:0000311;1.92e-07;6!CL:0000079;1.92e-07;6!CL:0000237;1.92e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,9.89e-25,14;CL:0000317,1.17e-20,2;CL:1000448,1.17e-20,2;CL:0002308,1.17e-20,2;CL:0002140,1.17e-20,2;CL:0000622,3.61e-18,5;CL:0000362,1.13e-17,9;CL:0000154,3.01e-15,6;CL:0000150,2.33e-10,9;CL:0002077,5.60e-10,34;CL:0000066,6.86e-09,253;CL:0000312,9.20e-09,5;CL:0000240,1.92e-07,6;CL:0000311,1.92e-07,6;CL:0000079,1.92e-07,6;CL:0000237,1.92e-07,6;CL:0000036,1.92e-07,6;CL:0000357,1.92e-07,6;CL:0000114,1.92e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.26e-27;29!CL:0000357;1.92e-07;6!CL:0000114;1.92e-07;6 | |||
|ontology_enrichment_disease=DOID:0060084!1.96e-13!3;DOID:127!1.96e-13!3;DOID:0060072!3.45e-10!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.54e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.63e-39!9;UBERON:0001557!1.46e-21!19;UBERON:0005795!8.44e-11!22;UBERON:0001708!4.29e-10!4;UBERON:0001704!4.29e-10!4;UBERON:0002419!9.54e-10!2;UBERON:0007771!9.54e-10!2;UBERON:0003297!9.54e-10!2;UBERON:0001821!9.54e-10!2;UBERON:0003487!9.54e-10!2;UBERON:0001820!9.54e-10!2;UBERON:0005089!9.54e-10!2;UBERON:0005088!9.54e-10!2;UBERON:0000995!9.89e-09!21;UBERON:0003975!2.73e-08!22;UBERON:0008947!6.01e-08!38;UBERON:0003258!6.01e-08!38;UBERON:0000065!9.21e-08!53;UBERON:0000072!1.03e-07!46;UBERON:0001004!2.52e-07!72;UBERON:0004175!3.50e-07!25;UBERON:0002090!7.31e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.94e-90;9!UBERON:0001557;5.94e-90;9!UBERON:0002419;1.35e-20;2!UBERON:0007771;1.35e-20;2!UBERON:0003297;1.35e-20;2!UBERON:0001821;1.35e-20;2!UBERON:0003487;1.35e-20;2!UBERON:0001820;1.35e-20;2!UBERON:0000072;9.53e-20;37!UBERON:0000065;1.27e-16;44!UBERON:0001004;4.03e-11;65!UBERON:0001003;1.09e-10;15!UBERON:0007376;1.09e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.95e-90,9;UBERON:0001557,4.24e-42,19;UBERON:0002419,1.17e-20,2;UBERON:0007771,1.17e-20,2;UBERON:0003297,1.17e-20,2;UBERON:0001821,1.17e-20,2;UBERON:0003487,1.17e-20,2;UBERON:0001820,1.17e-20,2;UBERON:0005089,1.17e-20,2;UBERON:0005088,1.17e-20,2;UBERON:0008947,1.68e-20,38;UBERON:0003258,1.68e-20,38;UBERON:0000072,2.37e-16,47;UBERON:0000065,4.46e-14,54;UBERON:0001004,3.00e-12,74;UBERON:0001003,1.05e-10,15;UBERON:0007376,1.05e-10,15;UBERON:0007383,1.05e-10,15;UBERON:0001041,3.34e-10,87;UBERON:0001048,3.22e-07,160;UBERON:0004921,4.57e-07,118 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,6.98010120235079,4.55178663210875,6.7483088367375,6.39705041847885,6.53638332277218,6.8808479542218,8.35954110593019,4.31687223275761,8.46443745282059,0,0,0,0,0,0,0,0,0,0,1.31700342490351,0,2.41269533787914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81201501960331,0.503946384596579,0.567100388969546,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.44559322797703,1.95018073810956,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3874448473769,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95193241990045,0.461701551022782,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0.782205530939212,0,0,0,0,0,0,0,0,7.54220910773745,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0.864221491201268,3.26587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0,1.0243108625637,0,0,0.591660003652827,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0.813792356631477,0,0,0 | |||
|short_description=p5@SPINK6 | |||
}} |
Revision as of 08:11, 22 January 2014
Short description: | p5@SPINK6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SPINK6_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | 0bp_to_ENST00000514389, NM_001195290, NM_205841_5end |
EntrezGene: | SPINK6 |
HGNC: | 29486 |
UniProt: | D6RGX9E0X656Q6UWN8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 9.89e-25 | 14 |
sebum secreting cell | 1.17e-20 | 2 |
epithelial cell of sweat gland | 1.17e-20 | 2 |
epithelial cell of skin gland | 1.17e-20 | 2 |
acinar cell of sebaceous gland | 1.17e-20 | 2 |
acinar cell | 3.61e-18 | 5 |
epidermal cell | 1.13e-17 | 9 |
protein secreting cell | 3.01e-15 | 6 |
glandular epithelial cell | 2.33e-10 | 9 |
ecto-epithelial cell | 5.60e-10 | 34 |
epithelial cell | 6.86e-09 | 253 |
keratinocyte | 9.20e-09 | 5 |
stratified squamous epithelial cell | 1.92e-07 | 6 |
keratin accumulating cell | 1.92e-07 | 6 |
stratified epithelial cell | 1.92e-07 | 6 |
keratinizing barrier epithelial cell | 1.92e-07 | 6 |
epithelial fate stem cell | 1.92e-07 | 6 |
stratified epithelial stem cell | 1.92e-07 | 6 |
surface ectodermal cell | 1.92e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.95e-90 | 9 |
upper respiratory tract | 4.24e-42 | 19 |
skin gland | 1.17e-20 | 2 |
epidermis gland | 1.17e-20 | 2 |
gland of integumental system | 1.17e-20 | 2 |
sebaceous gland | 1.17e-20 | 2 |
skin sebaceous gland | 1.17e-20 | 2 |
sweat gland | 1.17e-20 | 2 |
sweat gland placode | 1.17e-20 | 2 |
sebaceous gland placode | 1.17e-20 | 2 |
respiratory primordium | 1.68e-20 | 38 |
endoderm of foregut | 1.68e-20 | 38 |
segment of respiratory tract | 2.37e-16 | 47 |
respiratory tract | 4.46e-14 | 54 |
respiratory system | 3.00e-12 | 74 |
skin epidermis | 1.05e-10 | 15 |
outer epithelium | 1.05e-10 | 15 |
enveloping layer of ectoderm | 1.05e-10 | 15 |
foregut | 3.34e-10 | 87 |
primordium | 3.22e-07 | 160 |
subdivision of digestive tract | 4.57e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.54e-08 | 106 |