FFCP PHASE1:Hg19::chr5:140743838..140743852,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56110 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8703 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y5G8 | |||
|association_with_transcript=-45bp_to_ENST00000518069,NM_018918,NM_032054,uc003lju.1,uc011das.1_5end | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_4_at_PCDHGA5_5end | |||
|id=chr5:140743838..140743852,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002591;7.62e-26;1!CL:0000047;7.77e-14;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,1.26e-25,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;3.15e-26;1!UBERON:0010115;7.62e-26;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;2.16e-26;1!DOID:4549;2.16e-26;1!DOID:5861;2.16e-26;1!DOID:6496;2.16e-26;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.16e-26,1;DOID:4549,2.16e-26,1;DOID:5861,2.16e-26,1;DOID:6496,2.16e-26,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.43e-36!115;UBERON:0001017!1.29e-23!82;UBERON:0005743!1.82e-23!86;UBERON:0001049!2.88e-23!57;UBERON:0005068!2.88e-23!57;UBERON:0006241!2.88e-23!57;UBERON:0007135!2.88e-23!57;UBERON:0002780!1.72e-22!41;UBERON:0001890!1.72e-22!41;UBERON:0006240!1.72e-22!41;UBERON:0001893!5.73e-22!34;UBERON:0002616!7.32e-22!59;UBERON:0003080!8.83e-22!42;UBERON:0003075!3.70e-21!86;UBERON:0007284!3.70e-21!86;UBERON:0002346!5.55e-21!90;UBERON:0002791!1.31e-20!33;UBERON:0000073!3.80e-20!94;UBERON:0001016!3.80e-20!94;UBERON:0001869!9.19e-20!32;UBERON:0002020!5.40e-18!34;UBERON:0003528!5.40e-18!34;UBERON:0000955!5.38e-17!69;UBERON:0006238!5.38e-17!69;UBERON:0002619!5.78e-17!22;UBERON:0001950!1.19e-16!20;UBERON:0000956!1.79e-14!25;UBERON:0000203!1.79e-14!25;UBERON:0003056!4.76e-14!61;UBERON:0000924!3.86e-11!173;UBERON:0006601!3.86e-11!173;UBERON:0004121!5.46e-11!169;UBERON:0002420!7.10e-10!9;UBERON:0007245!7.10e-10!9;UBERON:0010009!7.10e-10!9;UBERON:0010011!7.10e-10!9;UBERON:0000454!7.10e-10!9;UBERON:0000153!9.01e-10!129;UBERON:0007811!9.01e-10!129;UBERON:0000033!3.02e-09!123;UBERON:0001871!5.86e-08!7;UBERON:0000025!1.58e-07!194;UBERON:0000475!5.18e-07!365;UBERON:0000468!8.91e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002363;7.62e-26;1!UBERON:0000996;7.62e-26;1!UBERON:0002360;1.21e-13;2!UBERON:0000078;1.21e-13;2!UBERON:0000094;1.21e-13;2!UBERON:0002012;1.21e-13;2!UBERON:0008886;1.21e-13;2!UBERON:0010743;1.21e-13;2!UBERON:0002331;6.44e-11;10!UBERON:0002418;1.01e-09;3!UBERON:0004755;1.01e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000996,5.93e-26,1;UBERON:0002363,7.62e-26,1;UBERON:0007645,7.62e-26,1;UBERON:0007647,7.62e-26,1;UBERON:0010115,7.62e-26,1;UBERON:0002360,1.21e-13,2;UBERON:0000094,1.21e-13,2;UBERON:0010743,1.21e-13,2;UBERON:0000078,1.55e-13,2;UBERON:0007497,1.55e-13,2;UBERON:0003643,1.55e-13,2;UBERON:0003504,1.55e-13,2;UBERON:0003469,1.55e-13,2;UBERON:0003496,1.55e-13,2;UBERON:0002012,1.55e-13,2;UBERON:0008886,1.55e-13,2;UBERON:0007303,1.55e-13,2;UBERON:0002061,1.55e-13,2;UBERON:0005432,1.55e-13,2;UBERON:0004363,1.55e-13,2;UBERON:0002331,6.94e-11,10;UBERON:0000358,6.94e-11,10;UBERON:0000307,6.94e-11,10;UBERON:0000091,6.94e-11,10;UBERON:0000087,6.94e-11,10;UBERON:0007010,6.94e-11,10;UBERON:0007806,6.94e-11,10;UBERON:0008780,6.94e-11,10;UBERON:0005728,6.94e-11,10;UBERON:0002418,1.01e-09,3;UBERON:0004755,1.01e-09,3;UBERON:0004145,1.81e-09,3 | |||
|phase1_expression=0.54503513781167,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,0,0.486634870302636,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0.206105058476878,0,0,0.168776332241266,0,0.252433774244115,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0.205476322550383,0,0,0,0,0,0.76228387266739,2.60279707715243,0.773288812777695,0.167516265334349,0,0,0,0,0.613457458595699,0,0,0.207970861530807,0,0,0.234282829985426,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0.281695602532241,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.964771509003264,0,0.774054819518572,0,0.658156191461918,0,0,0.615602068030377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0.30607276163049,1.20054501294127,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,27.6241676544396,0.677942222341597,0,0,0.569797163602908,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0,0.458320848023367,0.717873024576814,0.199679000498991,0,0.669514372325618,0.403100834920358,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.485996453264197,0,0.157611414598396,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.332787154610557,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.385375350578757,0,0.478901577171454,0,1.51243017733031,0.207471757392654,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0.472763092328763,0,0.826747186004736,0.19024743058172,0.546974809018219,0,0.496211178389294,0,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0.328863867814245,0,0.444925607568277,0.863424021355654,0.628462359664008,0,0.913158720509496,0,0,0.500335809236594,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513314034281235,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0.297046400327086,0.4226557275834,0.169927114687817,0,0,0,0,0,0,0,0,0.143339583151451,0,0.339957450954573,0.872701380680755,0.5290268405154,0,0.462175628631418,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.310298987585686,0.213233981900981,0.23806443146374,0,0,0,0.190941474834495,0.404234377916439,0,0,0.0673520530145875,0.215166616178029,0.665320713092027,0,0,0,0,2.34640942403454,0.366724332548599,0.406896178315738,1.33151354837103,0.402547587182052,0 | |||
|short_description=p4@PCDHGA5 | |||
}} |
Revision as of 07:53, 22 January 2014
Short description: | p4@PCDHGA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PCDHGA5_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -45bp_to_ENST00000518069, NM_018918, NM_032054, uc003lju.1, uc011das.1_5end |
EntrezGene: | PCDHGA5 |
HGNC: | 8703 |
UniProt: | Q9Y5G8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 1.26e-25 | 1 |
Ontology term | p-value | n |
---|---|---|
vagina | 5.93e-26 | 1 |
dura mater | 7.62e-26 | 1 |
future meninx | 7.62e-26 | 1 |
ectomeninx | 7.62e-26 | 1 |
future dura mater | 7.62e-26 | 1 |
meninx | 1.21e-13 | 2 |
membrane organ | 1.21e-13 | 2 |
meningeal cluster | 1.21e-13 | 2 |
mixed ectoderm/mesoderm/endoderm-derived structure | 1.55e-13 | 2 |
developing epithelial placode | 1.55e-13 | 2 |
respiratory system arterial blood vessel | 1.55e-13 | 2 |
respiratory system blood vessel | 1.55e-13 | 2 |
respiratory system artery | 1.55e-13 | 2 |
head blood vessel | 1.55e-13 | 2 |
pulmonary artery | 1.55e-13 | 2 |
pulmonary vascular system | 1.55e-13 | 2 |
pharyngeal vasculature | 1.55e-13 | 2 |
truncus arteriosus | 1.55e-13 | 2 |
aortic sac | 1.55e-13 | 2 |
pharyngeal arch artery | 1.55e-13 | 2 |
umbilical cord | 6.94e-11 | 10 |
blastocyst | 6.94e-11 | 10 |
blastula | 6.94e-11 | 10 |
bilaminar disc | 6.94e-11 | 10 |
inner cell mass | 6.94e-11 | 10 |
cleaving embryo | 6.94e-11 | 10 |
connecting stalk | 6.94e-11 | 10 |
inner cell mass derived epiblast | 6.94e-11 | 10 |
extraembryonic mesoderm | 6.94e-11 | 10 |
cartilage tissue | 1.01e-09 | 3 |
skeletal tissue | 1.01e-09 | 3 |
outflow tract | 1.81e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.16e-26 | 1 |
extraosseous chondrosarcoma | 2.16e-26 | 1 |
myxoid chondrosarcoma | 2.16e-26 | 1 |
extraskeletal myxoid chondrosarcoma | 2.16e-26 | 1 |