FFCP PHASE1:Hg19::chr5:121413974..121413986,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4015 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6664 | |||
|TSSclassifier=strong | |||
|UniProt=P28300 | |||
|association_with_transcript=0bp_to_ENST00000231004_5end | |||
|coexpression_cluster_id=C421 | |||
|description=CAGE_peak_4_at_LOX_5end | |||
|id=chr5:121413974..121413986,- | |||
|ontology_enrichment_celltype=CL:0000055!1.96e-46!180;CL:0000057!2.60e-26!75;CL:0000222!7.24e-21!119;CL:0000680!1.70e-18!57;CL:0000056!1.70e-18!57;CL:0000355!1.70e-18!57;CL:0000187!1.98e-17!54;CL:0000183!1.78e-16!59;CL:0000393!1.82e-15!60;CL:0000211!1.82e-15!60;CL:0000192!3.86e-15!42;CL:0000514!3.86e-15!42;CL:0000220!3.55e-13!246;CL:0002321!1.38e-12!248;CL:0000359!2.62e-12!32;CL:0002620!9.45e-11!23;CL:0000144!1.03e-08!625;CL:0002334!3.86e-08!12;CL:0002371!7.95e-08!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.85e-12;32!CL:0000192;6.15e-12;43!CL:0002620;2.14e-11;23!CL:0000057;2.71e-11;73!CL:0000187;1.39e-10;55!CL:0002334;1.32e-08;12!CL:0000393;1.39e-08;61!CL:0000211;1.39e-08;61!CL:0002320;2.47e-08;188!CL:0000134;9.36e-08;55!CL:0000723;2.81e-07;61!CL:0000048;3.20e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.08e-28,76;CL:0000222,1.59e-20,121;CL:0000680,4.67e-20,58;CL:0000056,4.67e-20,58;CL:0000355,4.67e-20,58;CL:0000187,6.50e-19,55;CL:0000192,1.86e-16,43;CL:0000514,1.86e-16,43;CL:0000393,2.42e-16,61;CL:0000211,2.42e-16,61;CL:0000359,4.64e-13,32;CL:0002620,2.15e-11,23;CL:0000048,3.03e-10,427;CL:0000723,3.31e-09,433;CL:0002321,7.11e-09,250;CL:0002334,1.34e-08,12;CL:0000034,3.11e-08,441 | |||
|ontology_enrichment_development_v019=CL:0000514;6.15e-12;43!CL:0000355;7.50e-11;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.21e-21!83;UBERON:0002329!1.21e-21!83;UBERON:0003077!1.21e-21!83;UBERON:0003059!1.21e-21!83;UBERON:0007282!1.21e-21!83;UBERON:0009618!1.21e-21!83;UBERON:0007285!1.21e-21!83;UBERON:0004290!1.15e-20!70;UBERON:0001134!9.81e-19!61;UBERON:0002036!9.81e-19!61;UBERON:0003082!9.81e-19!61;UBERON:0002385!2.48e-18!63;UBERON:0001015!2.48e-18!63;UBERON:0000383!2.48e-18!63;UBERON:0005256!7.50e-18!143;UBERON:0002049!2.27e-17!79;UBERON:0007798!2.27e-17!79;UBERON:0000486!5.92e-17!82;UBERON:0004872!9.53e-17!84;UBERON:0000490!1.30e-14!138;UBERON:0000055!3.15e-14!69;UBERON:0001981!1.44e-13!60;UBERON:0007500!1.44e-13!60;UBERON:0004537!1.44e-13!60;UBERON:0006965!1.44e-13!60;UBERON:0003914!2.21e-13!118;UBERON:0004535!3.35e-13!110;UBERON:0001009!4.83e-13!113;UBERON:0001637!9.10e-13!42;UBERON:0003509!9.10e-13!42;UBERON:0004572!9.10e-13!42;UBERON:0002100!2.52e-12!216;UBERON:0000475!4.26e-11!365;UBERON:0004573!1.02e-10!33;UBERON:0004571!1.02e-10!33;UBERON:0003104!9.05e-10!238;UBERON:0009142!9.05e-10!238;UBERON:0000468!2.01e-09!659;UBERON:0003102!3.89e-09!95;UBERON:0000481!6.55e-09!347;UBERON:0002199!2.97e-08!45;UBERON:0002416!2.97e-08!45;UBERON:0000119!3.10e-08!312;UBERON:0000483!7.09e-08!309;UBERON:0000477!6.20e-07!286;UBERON:0002097!6.39e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.69e-10;33!UBERON:0004571;2.69e-10;33!UBERON:0001637;8.88e-10;42!UBERON:0003509;8.88e-10;42!UBERON:0004572;8.88e-10;42!UBERON:0002384;3.07e-09;198!UBERON:0007500;4.82e-08;56!UBERON:0001981;4.82e-08;56!UBERON:0004537;4.82e-08;56!UBERON:0002385;6.38e-08;31!UBERON:0001015;6.38e-08;31!UBERON:0000383;6.38e-08;31!UBERON:0002049;8.75e-08;75!UBERON:0007798;8.75e-08;75!UBERON:0000055;1.65e-07;65!UBERON:0000947;6.34e-07;21!UBERON:0010191;6.34e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,5.47e-22,71;UBERON:0003059,5.47e-22,71;UBERON:0007282,5.47e-22,71;UBERON:0004290,5.47e-22,71;UBERON:0009618,5.47e-22,71;UBERON:0007524,1.05e-21,73;UBERON:0003077,3.03e-21,72;UBERON:0007285,3.03e-21,72;UBERON:0007503,1.53e-20,78;UBERON:0001134,6.49e-20,62;UBERON:0002036,6.49e-20,62;UBERON:0003082,6.49e-20,62;UBERON:0002385,1.72e-19,64;UBERON:0001015,1.72e-19,64;UBERON:0000383,1.72e-19,64;UBERON:0002049,5.85e-18,78;UBERON:0007798,5.85e-18,78;UBERON:0000486,8.91e-18,83;UBERON:0004872,2.12e-17,83;UBERON:0000490,1.30e-16,148;UBERON:0005256,3.95e-16,122;UBERON:0003104,3.57e-15,160;UBERON:0009142,3.57e-15,160;UBERON:0000055,1.04e-14,68;UBERON:0004535,2.07e-14,109;UBERON:0001009,3.13e-14,112;UBERON:0007500,6.66e-14,59;UBERON:0001981,6.66e-14,59;UBERON:0004537,6.66e-14,59;UBERON:0006965,6.66e-14,59;UBERON:0001637,1.50e-13,42;UBERON:0003509,1.50e-13,42;UBERON:0004572,1.50e-13,42;UBERON:0003914,5.08e-13,117;UBERON:0004573,2.33e-11,33;UBERON:0004571,2.33e-11,33;UBERON:0002100,4.53e-10,199;UBERON:0002199,5.67e-09,46;UBERON:0002416,5.67e-09,46;UBERON:0000926,3.75e-08,315;UBERON:0004120,3.75e-08,315;UBERON:0006603,3.75e-08,315;UBERON:0002097,1.53e-07,41;UBERON:0000947,5.74e-07,21;UBERON:0010191,5.74e-07,21;UBERON:0000948,5.96e-07,24;UBERON:0005498,5.96e-07,24;UBERON:0004140,5.96e-07,24;UBERON:0009881,5.96e-07,24;UBERON:0004141,5.96e-07,24;UBERON:0003084,5.96e-07,24;UBERON:0007005,5.96e-07,24;UBERON:0004139,5.96e-07,24;UBERON:0004291,5.96e-07,24 | |||
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| |||
|short_description=p4@LOX | |||
}} |
Revision as of 07:05, 22 January 2014
Short description: | p4@LOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LOX_5end |
Coexpression cluster: | C421_Smooth_Fibroblast_epithelioid_hepatic_Sertoli_Ewing_tenocyte |
Association with transcript: | 0bp_to_ENST00000231004_5end |
EntrezGene: | LOX |
HGNC: | 6664 |
UniProt: | P28300 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.08e-28 | 76 |
mesodermal cell | 1.59e-20 | 121 |
muscle precursor cell | 4.67e-20 | 58 |
myoblast | 4.67e-20 | 58 |
multi-potent skeletal muscle stem cell | 4.67e-20 | 58 |
muscle cell | 6.50e-19 | 55 |
smooth muscle cell | 1.86e-16 | 43 |
smooth muscle myoblast | 1.86e-16 | 43 |
electrically responsive cell | 2.42e-16 | 61 |
electrically active cell | 2.42e-16 | 61 |
vascular associated smooth muscle cell | 4.64e-13 | 32 |
skin fibroblast | 2.15e-11 | 23 |
multi fate stem cell | 3.03e-10 | 427 |
somatic stem cell | 3.31e-09 | 433 |
embryonic cell | 7.11e-09 | 250 |
preadipocyte | 1.34e-08 | 12 |
stem cell | 3.11e-08 | 441 |