FFCP PHASE1:Hg19::chr5:112539038..112539056,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4163 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6935 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-24bp_to_ENST00000506605_5end | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_10_at_MCC_5end | |||
|id=chr5:112539038..112539056,- | |||
|ontology_enrichment_celltype=CL:0000148!2.18e-07!10;CL:0000541!2.18e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.40e-09;10!CL:0000147;5.57e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.49e-09,10;CL:0000541,1.49e-09,10;CL:0000333,5.41e-08,41;CL:0000147,5.80e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.19e-14;3!UBERON:0004140;2.07e-11;1!UBERON:0010227;4.01e-11;1!UBERON:0005062;9.89e-11;4!UBERON:0007284;9.89e-11;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;2.24e-07;22!DOID:2994;2.24e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.30e-07,22;DOID:2994,2.30e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!6.86e-13!94;UBERON:0001016!6.86e-13!94;UBERON:0005743!8.29e-13!86;UBERON:0007023!1.27e-12!115;UBERON:0001017!1.30e-12!82;UBERON:0002346!7.49e-12!90;UBERON:0003075!1.16e-11!86;UBERON:0007284!1.16e-11!86;UBERON:0000955!1.59e-11!69;UBERON:0006238!1.59e-11!69;UBERON:0001049!2.97e-10!57;UBERON:0005068!2.97e-10!57;UBERON:0006241!2.97e-10!57;UBERON:0007135!2.97e-10!57;UBERON:0002616!1.02e-09!59;UBERON:0000924!2.42e-09!173;UBERON:0006601!2.42e-09!173;UBERON:0004121!4.38e-09!169;UBERON:0003056!1.52e-08!61;UBERON:0002780!2.73e-08!41;UBERON:0001890!2.73e-08!41;UBERON:0006240!2.73e-08!41;UBERON:0003080!5.30e-08!42;UBERON:0000033!1.19e-07!123;UBERON:0000153!6.06e-07!129;UBERON:0007811!6.06e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.25e-21;2!UBERON:0002757;1.25e-21;2!UBERON:0010134;1.25e-21;2!UBERON:0005408;1.25e-21;2!UBERON:0001899;1.25e-21;2!UBERON:0003978;5.39e-14;3!UBERON:0000946;5.39e-14;3!UBERON:0003296;2.68e-11;4!UBERON:0010133;2.68e-11;4!UBERON:0002784;2.68e-11;4!UBERON:0002079;4.01e-11;1!UBERON:0002135;4.01e-11;1!UBERON:0002146;4.01e-11;1!UBERON:0005623;4.01e-11;1!UBERON:0007100;9.82e-10;25!UBERON:0000966;3.75e-09;5!UBERON:0005388;3.75e-09;5!UBERON:0001802;3.75e-09;5!UBERON:0000948;2.24e-07;22!UBERON:0001894;8.13e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.25e-21,2;UBERON:0002757,1.25e-21,2;UBERON:0010134,1.25e-21,2;UBERON:0005408,1.25e-21,2;UBERON:0001899,1.25e-21,2;UBERON:0003978,6.58e-14,3;UBERON:0009751,6.58e-14,3;UBERON:0000946,6.58e-14,3;UBERON:0002523,6.58e-14,3;UBERON:0005983,6.58e-14,3;UBERON:0002165,6.58e-14,3;UBERON:0002062,6.58e-14,3;UBERON:0007280,6.58e-14,3;UBERON:0003296,2.68e-11,4;UBERON:0010133,2.68e-11,4;UBERON:0002784,2.68e-11,4;UBERON:0002079,3.63e-11,1;UBERON:0002135,4.01e-11,1;UBERON:0002146,5.43e-11,1;UBERON:0005623,5.43e-11,1;UBERON:0007100,5.41e-09,27;UBERON:0000966,9.26e-08,6;UBERON:0005388,9.26e-08,6;UBERON:0001802,9.26e-08,6;UBERON:0001894,8.13e-07,7;UBERON:0006222,8.13e-07,7;UBERON:0000948,9.49e-07,24;UBERON:0005498,9.49e-07,24;UBERON:0004140,9.49e-07,24;UBERON:0009881,9.49e-07,24;UBERON:0004141,9.49e-07,24;UBERON:0003084,9.49e-07,24;UBERON:0007005,9.49e-07,24;UBERON:0004139,9.49e-07,24;UBERON:0004291,9.49e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410623275218653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0.952468414382536,0.763976851116555,1.17217447210047,0,0.925447434329912,2.10240140490742,3.14409075893636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0.34444334449382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0.269272933229316,2.17294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0.468528891450678,0,0,0,0,0,0,0,0.300646838828985,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,1.80784592624426,0,0,0,0,0.160317640503067,0.213452994739353,0,0,0,0.343189995723929,0,0,0,0,0,0,0.866851769704557,0.600420288709789,0,0,0,0,1.39641200636127,1.14580212005842,0,0,1.71690419254628,0.669514372325618,2.01550417460179,0,0,0.236349546921671,0.164831716762333,0.404421263125109,0,0,0,0.408610218334727,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0.179287339332845,0,1.42939065274673,0,0,0,0,0,0,0,0,0.566560457600628,0.293104467356165,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0,0,0,0,0.122026264901963,0.1251909307065,0,0.221858103073705,0.124192805882767,28.3614701619273,0,2.57803499820801,0,0.470531639396343,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02315497042921,0,0,0.436838552768056,1.18812770967818,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0.496211178389294,0,0,9.10693120993088,20.1770233331294,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,3.07349139959622,12.1670481034199,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,7.58589565543461,0,0,0.218559560503957,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0.252332849670158,0.437062287854782,1.77377901416012,0.305966489225945,0,0,0,0,0.267964130156178,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p10@MCC | |||
}} |
Revision as of 06:55, 22 January 2014
Short description: | p10@MCC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_MCC_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -24bp_to_ENST00000506605_5end |
EntrezGene: | MCC |
HGNC: | 6935 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.49e-09 | 10 |
melanoblast | 1.49e-09 | 10 |
migratory neural crest cell | 5.41e-08 | 41 |
pigment cell | 5.80e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.25e-21 | 2 |
regional part of epithalamus | 1.25e-21 | 2 |
secretory circumventricular organ | 1.25e-21 | 2 |
circumventricular organ | 1.25e-21 | 2 |
epithalamus | 1.25e-21 | 2 |
valve | 6.58e-14 | 3 |
cardiac mesenchyme | 6.58e-14 | 3 |
cardial valve | 6.58e-14 | 3 |
tunica intima | 6.58e-14 | 3 |
heart layer | 6.58e-14 | 3 |
endocardium | 6.58e-14 | 3 |
endocardial cushion | 6.58e-14 | 3 |
presumptive endocardium | 6.58e-14 | 3 |
gland of diencephalon | 2.68e-11 | 4 |
neuroendocrine gland | 2.68e-11 | 4 |
regional part of diencephalon | 2.68e-11 | 4 |
left cardiac atrium | 3.63e-11 | 1 |
mitral valve | 4.01e-11 | 1 |
pulmonary valve | 5.43e-11 | 1 |
semi-lunar valve | 5.43e-11 | 1 |
primary circulatory organ | 5.41e-09 | 27 |
retina | 9.26e-08 | 6 |
photoreceptor array | 9.26e-08 | 6 |
posterior segment of eyeball | 9.26e-08 | 6 |
diencephalon | 8.13e-07 | 7 |
future diencephalon | 8.13e-07 | 7 |
heart | 9.49e-07 | 24 |
primitive heart tube | 9.49e-07 | 24 |
primary heart field | 9.49e-07 | 24 |
anterior lateral plate mesoderm | 9.49e-07 | 24 |
heart tube | 9.49e-07 | 24 |
heart primordium | 9.49e-07 | 24 |
cardiac mesoderm | 9.49e-07 | 24 |
cardiogenic plate | 9.49e-07 | 24 |
heart rudiment | 9.49e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.30e-07 | 22 |
germ cell cancer | 2.30e-07 | 22 |