FFCP PHASE1:Hg19::chr4:111532491..111532504,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:111532491..111532504,+ | |||
|id=chr4:111532491..111532504,+ | |||
|ontology_enrichment_celltype=CL:1000497!1.17e-13!18;CL:0002518!1.17e-13!18;CL:0002588!6.35e-11!2;CL:1000507!7.96e-11!12;CL:1000494!7.96e-11!12;CL:1000449!4.67e-08!16;CL:0000066!8.48e-08!254;CL:0000313!4.09e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000313;4.72e-15;1!CL:0002149;6.79e-10;6!CL:0002255;6.79e-10;6!CL:0000159;3.56e-08;2!CL:0002253;3.95e-08;2!CL:0002076;1.85e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,4.73e-15,1;CL:0002149,6.50e-10,6;CL:0002255,6.50e-10,6;CL:0000159,3.56e-08,2;CL:0002253,3.82e-08,2;CL:0002076,6.39e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:299!1.65e-16!25;DOID:4468!3.56e-12!2;DOID:305!3.55e-07!106;DOID:2152!4.09e-07!1;DOID:120!7.09e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:299;2.77e-33;25!DOID:4468;1.49e-27;2!DOID:2152;4.72e-15;1!DOID:120;2.06e-12;27!DOID:193;1.49e-11;29!DOID:3001;6.79e-10;6 | |||
|ontology_enrichment_disease_v019_2=DOID:299,3.43e-33,25;DOID:4468,2.39e-27,2;DOID:2152,4.73e-15,1;DOID:120,2.19e-12,27;DOID:193,1.57e-11,29;DOID:305,2.15e-11,106;DOID:3001,6.50e-10,6;DOID:0050687,3.86e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0002113!9.74e-18!27;UBERON:0003918!9.74e-18!27;UBERON:0005095!9.74e-18!27;UBERON:0007687!9.74e-18!27;UBERON:0006554!5.40e-15!44;UBERON:0000489!1.11e-14!32;UBERON:0001008!1.31e-14!45;UBERON:0009773!7.96e-11!12;UBERON:0001231!7.96e-11!12;UBERON:0004810!7.96e-11!12;UBERON:0006555!1.29e-10!17;UBERON:0005103!1.29e-10!17;UBERON:0000083!1.29e-10!17;UBERON:0009201!1.29e-10!17;UBERON:0004819!1.29e-10!17;UBERON:0006553!1.29e-10!17;UBERON:0003074!1.29e-10!17;UBERON:0003060!1.29e-10!17;UBERON:0000080!5.38e-10!18;UBERON:0002120!5.38e-10!18;UBERON:0004875!5.38e-10!18;UBERON:0005721!5.38e-10!18;UBERON:0005754!5.38e-10!18;UBERON:0007297!5.38e-10!18;UBERON:0001155!5.43e-10!9;UBERON:0004876!6.13e-09!20;UBERON:0000160!9.58e-09!27;UBERON:0005409!1.47e-08!35;UBERON:0003887!1.74e-08!21;UBERON:0000059!3.48e-08!11;UBERON:0004211!4.67e-08!16;UBERON:0001285!4.67e-08!16;UBERON:0007684!4.67e-08!16;UBERON:0003220!4.67e-08!16;UBERON:0004208!4.67e-08!16;UBERON:0003064!5.11e-08!37;UBERON:0005172!8.50e-08!55;UBERON:0005173!8.50e-08!55;UBERON:0003103!3.97e-07!69;UBERON:0004911!4.09e-07!1;UBERON:0002417!7.34e-07!61;UBERON:0000916!7.34e-07!61;UBERON:0000058!9.63e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;4.72e-15;1!UBERON:0005409;1.95e-14;22!UBERON:0000160;3.68e-12;17!UBERON:0002108;1.50e-11;4!UBERON:0004921;6.20e-09;33!UBERON:0004909;3.56e-08;2!UBERON:0001155;6.31e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,4.73e-15,1;UBERON:0005409,8.71e-13,25;UBERON:0000160,3.42e-12,17;UBERON:0002108,1.50e-11,4;UBERON:0004909,3.56e-08,2;UBERON:0001155,5.86e-07,9;UBERON:0001046,6.77e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53804844142407,0,0,0,0,0,0,0.15403067420883,0.784349769176855,1.46139224653261,0.316654886678627,0,0,0,0,0,0,0,0,0.671624264166535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05499032264014,3.26465616318295,3.39247371441458,0,2.98578579323551,0.619202951523374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.84609546029793,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29681375438695,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.472091293214983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30013224972365,0,0,0,0,0,1.94334832096759,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8666168169323,5.14534986269845,0,0.731507549893617,0,0,0,0,0,0,0,0,0,0,1.62065732026684,2.40415516554353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:111532491..111532504,+ | |||
}} |
Revision as of 02:44, 22 January 2014
Short description: | p@chr4:111532491..111532504, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:111532491..111532504, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 4.73e-15 | 1 |
epithelial cell of uterus | 6.50e-10 | 6 |
stromal cell of endometrium | 6.50e-10 | 6 |
seromucus secreting cell | 3.56e-08 | 2 |
epithelial cell of large intestine | 3.82e-08 | 2 |
endo-epithelial cell | 6.39e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 4.73e-15 | 1 |
gastrointestinal system | 8.71e-13 | 25 |
intestine | 3.42e-12 | 17 |
small intestine | 1.50e-11 | 4 |
epithelium of gonad | 3.56e-08 | 2 |
colon | 5.86e-07 | 9 |
hindgut | 6.77e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 3.43e-33 | 25 |
clear cell adenocarcinoma | 2.39e-27 | 2 |
ovary epithelial cancer | 4.73e-15 | 1 |
female reproductive organ cancer | 2.19e-12 | 27 |
reproductive organ cancer | 1.57e-11 | 29 |
carcinoma | 2.15e-11 | 106 |
female reproductive endometrioid cancer | 6.50e-10 | 6 |
cell type cancer | 3.86e-08 | 143 |