FFCP PHASE1:Hg19::chr3:139258382..139258393,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5947 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9919 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=277bp_to_uc010huj.2_5end | |||
|coexpression_cluster_id=C1921 | |||
|description=CAGE_peak_5_at_RBP1_5end | |||
|id=chr3:139258382..139258393,- | |||
|ontology_enrichment_celltype=CL:0002319!2.88e-08!25;CL:0000128!3.84e-07!7;CL:0000126!3.84e-07!7;CL:0000127!3.84e-07!7;CL:0002453!3.84e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000128;4.75e-15;7!CL:0000126;4.75e-15;7!CL:0000127;4.75e-15;7!CL:1000507;2.75e-09;10!CL:1000494;2.75e-09;10!CL:0000669;8.41e-09;4!CL:0002319;1.46e-08;25!CL:0000064;2.13e-08;3!CL:0000067;2.13e-08;3!CL:0005012;2.13e-08;3!CL:0002304;2.13e-08;3!CL:0002603;4.82e-08;3!CL:0002605;9.10e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,4.75e-15,7;CL:0000126,4.75e-15,7;CL:0000127,4.75e-15,7;CL:0002453,4.75e-15,7;CL:1000507,1.96e-09,10;CL:1000494,1.96e-09,10;CL:0000669,6.06e-09,4;CL:0002319,1.25e-08,25;CL:0000064,2.14e-08,3;CL:0000067,2.14e-08,3;CL:0005012,2.14e-08,3;CL:0002304,2.14e-08,3;CL:0002603,4.68e-08,3;CL:0000133,8.46e-08,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.53e-18!86;UBERON:0000481!2.37e-18!347;UBERON:0000073!3.52e-18!94;UBERON:0001016!3.52e-18!94;UBERON:0000033!5.74e-18!123;UBERON:0000475!6.95e-18!365;UBERON:0000153!1.16e-17!129;UBERON:0007811!1.16e-17!129;UBERON:0002346!2.03e-16!90;UBERON:0000924!2.64e-16!173;UBERON:0006601!2.64e-16!173;UBERON:0001017!2.91e-16!82;UBERON:0003075!2.09e-15!86;UBERON:0007284!2.09e-15!86;UBERON:0004121!2.32e-15!169;UBERON:0000477!4.24e-15!286;UBERON:0000119!5.93e-15!312;UBERON:0004111!1.10e-14!241;UBERON:0000483!5.21e-14!309;UBERON:0000955!4.70e-13!69;UBERON:0006238!4.70e-13!69;UBERON:0000922!7.81e-13!612;UBERON:0002616!1.65e-12!59;UBERON:0000468!2.11e-12!659;UBERON:0000025!5.27e-12!194;UBERON:0003056!1.96e-11!61;UBERON:0000064!5.26e-11!219;UBERON:0001049!1.71e-10!57;UBERON:0005068!1.71e-10!57;UBERON:0006241!1.71e-10!57;UBERON:0007135!1.71e-10!57;UBERON:0000467!1.98e-10!625;UBERON:0002050!2.00e-10!605;UBERON:0005423!2.00e-10!605;UBERON:0000480!2.66e-10!626;UBERON:0000923!4.38e-10!604;UBERON:0005291!4.38e-10!604;UBERON:0006598!4.38e-10!604;UBERON:0002532!4.38e-10!604;UBERON:0000062!5.81e-10!511;UBERON:0000466!7.95e-10!126;UBERON:0001032!2.27e-09!24;UBERON:0004456!2.27e-09!24;UBERON:0007625!9.44e-09!11;UBERON:0000020!1.08e-08!23;UBERON:0001048!3.04e-08!168;UBERON:0002104!4.06e-08!21;UBERON:0007023!7.67e-08!115;UBERON:0000970!1.90e-07!20;UBERON:0002200!2.84e-07!11;UBERON:0006876!2.84e-07!11;UBERON:0005256!4.55e-07!143;UBERON:0000464!4.55e-07!104;UBERON:0003064!5.08e-07!37;UBERON:0000019!5.31e-07!19;UBERON:0000047!5.31e-07!19;UBERON:0004088!5.31e-07!19;UBERON:0003072!5.31e-07!19;UBERON:0003071!5.31e-07!19;UBERON:0004128!5.31e-07!19;UBERON:0005177!6.87e-07!107;UBERON:0003101!8.91e-07!22;UBERON:0000079!8.91e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.17e-16;11!UBERON:0002104;2.98e-13;21!UBERON:0001032;3.35e-13;24!UBERON:0004456;3.35e-13;24!UBERON:0000019;1.38e-12;19!UBERON:0000047;1.38e-12;19!UBERON:0004088;1.38e-12;19!UBERON:0010230;1.38e-12;19!UBERON:0000020;7.92e-12;23!UBERON:0000970;8.09e-12;20!UBERON:0001456;4.00e-11;21!UBERON:0000488;1.71e-10;4!UBERON:0001801;7.85e-10;14!UBERON:0006876;1.90e-09;11!UBERON:0004211;2.75e-09;10!UBERON:0009773;2.75e-09;10!UBERON:0001231;2.75e-09;10!UBERON:0004810;2.75e-09;10!UBERON:0001778;2.13e-08;3!UBERON:0001775;2.13e-08;3!UBERON:0002203;6.41e-07;6!UBERON:0001768;6.41e-07;6!UBERON:0002200;6.41e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.31e-16,11;UBERON:0000019,4.83e-14,20;UBERON:0000047,4.83e-14,20;UBERON:0010312,4.83e-14,20;UBERON:0004088,4.83e-14,20;UBERON:0010230,4.83e-14,20;UBERON:0003072,4.83e-14,20;UBERON:0004128,4.83e-14,20;UBERON:0003071,4.83e-14,20;UBERON:0000970,3.19e-13,21;UBERON:0002104,3.19e-13,21;UBERON:0000020,3.59e-13,24;UBERON:0001032,3.59e-13,24;UBERON:0004456,3.59e-13,24;UBERON:0001456,1.77e-12,22;UBERON:0002346,1.38e-10,86;UBERON:0000488,1.77e-10,4;UBERON:0001801,9.51e-10,14;UBERON:0006876,1.67e-09,11;UBERON:0004810,1.96e-09,10;UBERON:0003075,1.97e-09,82;UBERON:0007284,1.97e-09,82;UBERON:0001778,2.14e-08,3;UBERON:0001775,2.14e-08,3;UBERON:0004121,5.22e-08,171;UBERON:0000924,5.22e-08,171;UBERON:0006601,5.22e-08,171;UBERON:0005085,5.52e-08,31;UBERON:0003056,1.38e-07,61;UBERON:0000119,1.90e-07,309;UBERON:0001048,2.24e-07,160;UBERON:0000483,4.33e-07,306;UBERON:0002203,6.53e-07,6;UBERON:0001768,6.53e-07,6;UBERON:0002200,6.53e-07,6;UBERON:0010371,8.15e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.527533956456907,0.618831764800233,0,0,0,0,0,9.97280570421982,4.69201589861782,15.9861907953825,5.43848375549008,1.64249310087461,1.00434111675842,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0.223915474239924,0,0.77272670290256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,6.70700859703636,0.383587685530591,0,0,0,0,0,33.2762556417519,36.8070799787856,34.167731634626,0.523916301990851,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0.379891534993739,0.132409180813219,0.573673241497627,0.354668382198357,0,0,0.74000264525148,0,0,0.326923806226917,1.81628913173918,8.64263886719998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0.773043412653187,0.545492241181669,0.860413786167011,0.609868530647977,0.662648841607426,0.580969714347592,3.10983165046111,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69077727312324,0,1.6462960453256,7.3504355692771,0,0,3.54473944008842,0,0,6.34800898104545,0.329250856225877,0,0.100528972411631,0.648119116109707,0.325808305310325,0,10.1031939417691,27.8232971940184,18.7853910777315,0.577465791044295,0,2.66355813128438,0,0,0,0,0,0.93733833986777,0.16798212819886,0.850650583454319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,11.7709218584986,0.4400297149257,0,0,0,0.531876233169741,0,0,0,0,2.14466990487221,0,0,0,2.13235169245527,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0.508189248444927,0,1.54657762555539,1.67516265334349,1.91381625495949,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0,0,0,0,0.300946099727719,0,0,0,0.553107505625109,0.0868836144680828,1.37060810223918,3.43143423810856,0,0,0,0,1.66435439510497,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0.519254429183621,0,0,1.40354529212299,0.368323955743585,0.803701137152247,0.182091168006717,1.04899531967539,2.25599806453706,1.5403067420883,0.784349769176855,2.92278449306521,1.26661954671451,0,0,0.215915916102139,0,1.89662506280697,10.5354852509519,0.254876273045038,0,2.23874754722178,0,0,4.10320200186223,2.29610251989794,0.976135183992909,0.206082023295445,0,0,0,0,0,3.19013370364003,0.154048617114644,0,0.275673144969061,0.107420244868274,0.145016693914229,0.255679882248303,7.21159488738573,0.165284915360978,0.192190067365106,0.127612712494584,0.4046311234222,1.39453664789186,0.62962469366128,0.6970372701606,0,0,0,0,0,0.744316738719335,1.2655176988749,0.571890581771475,0,0.855877976067841,0,0,0,0.274537029736055,0.471249609382746,0,0,0,0,0,0,0.409499734223957,1.41405431953713,1.13008116620243,2.75682671773062,0,0,0,0,0,0.30982349809975,0,0.286822704408103,0.0982490410131212,0,0,0,0,0,0.349934720244983,0.288666338176536,0.670302275535787,2.17781969722645,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0,0,0,0,0,0,0,0,0.597743964753209,0.276283915531148,0,3.88620993508188,0,0,0.269605053441981,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0.682760689712998,0.254253650292766,0,0,0,0.173624994933292,0.885741385813839,0.241192877250816,0,0.221158519862449,0.591095237907095,0.438770794307945,0,0,0,0,0,0,0,0.957003479195758,1.37396390102793,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.269604531922708,0,0.702793337176017,0,0.19566461893209,0,0.394584402849391,1.20990716048664,0.30607276163049,0,0,0,0,0,0,0,0,0,0,2.74378712760257,0,0.873633341210151,2.57979048707425,0,0,0,0.193978032976839,0,0.677942222341597,0,0,0.189932387867636,0.195551382734803,0.320635281006135,2.13452994739353,1.59847687665704,0,0,0.686379991447858,0,0.124252535565433,0.235694034616795,0.135904206073614,0.418411385249333,0,0.866851769704557,1.20084057741958,0.136905378891993,0,0,0,0.558564802544508,0.229160424011684,0,0,0.429226048136571,0.446342914883745,0.335917362433631,0,0,0.0787831823072236,0.164831716762333,0.202210631562555,0.393709926058995,0,1.59045937961861,0.136203406111576,2.08979093004525,0.687697182986169,0.415440338029185,0,0,0.121499113316049,0,0.0788057072991982,0.367182116944987,0,0,0.383830394638891,1.42939065274673,0,0,0,0,0,0,0,0,0.226624183040251,0.439656701034247,1.32506888912221,0.258565912723101,0.39669780522807,0,0,0.106787412567695,0.314408610199332,0.414239055347196,0.496166021811951,0,0,3.19170628885091,0,0.7520696820681,0,0.327872630709804,8.79502939001312,0,0.244052529803926,0.1251909307065,4.58727356552057,0.776503360757966,0.558867626472451,0.276697269872462,0.499921631848426,0,0,1.41159491818903,0,1.01444720027578,0,0.233713309847224,0,0,0.50313580350515,0,0.457680136793847,0,0.466311601748341,0,0.159296767163702,0,2.79473322377267,0.829412415681711,0,3.1304703708704,0.450772826991655,0.380805212168795,0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| |||
|short_description=p5@RBP1 | |||
}} |
Revision as of 21:38, 21 January 2014
Short description: | p5@RBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RBP1_5end |
Coexpression cluster: | C1921_small_Renal_Ciliary_Astrocyte_Lens_Meningeal_maxillary |
Association with transcript: | 277bp_to_uc010huj.2_5end |
EntrezGene: | RBP1 |
HGNC: | 9919 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 4.75e-15 | 7 |
macroglial cell | 4.75e-15 | 7 |
astrocyte | 4.75e-15 | 7 |
oligodendrocyte precursor cell | 4.75e-15 | 7 |
kidney tubule cell | 1.96e-09 | 10 |
nephron tubule epithelial cell | 1.96e-09 | 10 |
pericyte cell | 6.06e-09 | 4 |
neural cell | 1.25e-08 | 25 |
ciliated cell | 2.14e-08 | 3 |
ciliated epithelial cell | 2.14e-08 | 3 |
multi-ciliated epithelial cell | 2.14e-08 | 3 |
non-pigmented ciliary epithelial cell | 2.14e-08 | 3 |
astrocyte of the cerebellum | 4.68e-08 | 3 |
neurectodermal cell | 8.46e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 1.31e-16 | 11 |
camera-type eye | 4.83e-14 | 20 |
simple eye | 4.83e-14 | 20 |
immature eye | 4.83e-14 | 20 |
ocular region | 4.83e-14 | 20 |
eyeball of camera-type eye | 4.83e-14 | 20 |
optic cup | 4.83e-14 | 20 |
optic vesicle | 4.83e-14 | 20 |
eye primordium | 4.83e-14 | 20 |
eye | 3.19e-13 | 21 |
visual system | 3.19e-13 | 21 |
sense organ | 3.59e-13 | 24 |
sensory system | 3.59e-13 | 24 |
entire sense organ system | 3.59e-13 | 24 |
face | 1.77e-12 | 22 |
neurectoderm | 1.38e-10 | 86 |
atypical epithelium | 1.77e-10 | 4 |
anterior segment of eyeball | 9.51e-10 | 14 |
vasculature of organ | 1.67e-09 | 11 |
nephron tubule epithelium | 1.96e-09 | 10 |
neural plate | 1.97e-09 | 82 |
presumptive neural plate | 1.97e-09 | 82 |
ciliary epithelium | 2.14e-08 | 3 |
ciliary body | 2.14e-08 | 3 |
ectoderm-derived structure | 5.22e-08 | 171 |
ectoderm | 5.22e-08 | 171 |
presumptive ectoderm | 5.22e-08 | 171 |
ectodermal placode | 5.52e-08 | 31 |
pre-chordal neural plate | 1.38e-07 | 61 |
cell layer | 1.90e-07 | 309 |
primordium | 2.24e-07 | 160 |
epithelium | 4.33e-07 | 306 |
vasculature of eye | 6.53e-07 | 6 |
uvea | 6.53e-07 | 6 |
vasculature of head | 6.53e-07 | 6 |
ecto-epithelium | 8.15e-07 | 104 |