FFCP PHASE1:Hg19::chr3:129325504..129325567,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23129 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9107 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y4D7 | |||
|association_with_transcript=14bp_to_NM_015103,uc003emx.2_5end | |||
|coexpression_cluster_id=C4280 | |||
|description=CAGE_peak_1_at_PLXND1_5end | |||
|id=chr3:129325504..129325567,- | |||
|ontology_enrichment_celltype=CL:0000115!3.74e-22!35;CL:0002139!1.95e-16!24;CL:0002078!5.60e-15!44;CL:0000071!9.16e-13!18;CL:0002546!9.16e-13!18;CL:0000213!2.68e-10!57;CL:0000215!2.68e-10!57;CL:1000413!3.69e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000115;2.31e-19;36!CL:0002139;1.86e-16;24!CL:0000071;8.87e-13;18!CL:0002078;2.61e-10;45!CL:1000413;3.64e-07;9!CL:0000213;7.24e-07;58!CL:0000215;7.24e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,8.41e-23,36;CL:0002139,1.90e-16,24;CL:0002078,1.44e-15,45;CL:0000071,8.99e-13,18;CL:0002546,8.99e-13,18;CL:0000213,9.11e-11,58;CL:0000215,9.11e-11,58;CL:1000413,3.66e-07,9;CL:0000057,6.50e-07,76;CL:0000222,7.31e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002546;8.87e-13;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.26e-13!216;UBERON:0001986!9.16e-13!18;UBERON:0004638!9.16e-13!18;UBERON:0004852!9.16e-13!18;UBERON:0001009!1.55e-11!113;UBERON:0004535!5.53e-11!110;UBERON:0002049!8.78e-11!79;UBERON:0007798!8.78e-11!79;UBERON:0000468!1.97e-10!659;UBERON:0000055!1.08e-09!69;UBERON:0000487!1.57e-09!22;UBERON:0004872!6.67e-09!84;UBERON:0003914!9.86e-09!118;UBERON:0000467!5.94e-08!625;UBERON:0002405!8.08e-08!115;UBERON:0006914!9.88e-08!25;UBERON:0000480!1.04e-07!626;UBERON:0003915!3.69e-07!9;UBERON:0004700!3.69e-07!9;UBERON:0001917!3.69e-07!9;UBERON:0000025!4.01e-07!194;UBERON:0001981!5.06e-07!60;UBERON:0007500!5.06e-07!60;UBERON:0004537!5.06e-07!60;UBERON:0006965!5.06e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.87e-13;18!UBERON:0001986;8.87e-13;18!UBERON:0004852;8.87e-13;18!UBERON:0000487;1.39e-09;22!UBERON:0006914;8.30e-08;25!UBERON:0003915;3.64e-07;9!UBERON:0004700;3.64e-07;9!UBERON:0001917;3.64e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,5.01e-14,203;UBERON:0000926,4.47e-13,315;UBERON:0004120,4.47e-13,315;UBERON:0006603,4.47e-13,315;UBERON:0004638,8.99e-13,18;UBERON:0001986,8.99e-13,18;UBERON:0004852,8.99e-13,18;UBERON:0001009,2.97e-11,112;UBERON:0004535,1.05e-10,109;UBERON:0002049,1.75e-10,78;UBERON:0007798,1.75e-10,78;UBERON:0000487,1.58e-09,22;UBERON:0000055,2.32e-09,68;UBERON:0004872,1.18e-08,83;UBERON:0003914,1.85e-08,117;UBERON:0006914,9.97e-08,25;UBERON:0002405,3.34e-07,93;UBERON:0003915,3.66e-07,9;UBERON:0004700,3.66e-07,9;UBERON:0001917,3.66e-07,9;UBERON:0007500,9.51e-07,59;UBERON:0001981,9.51e-07,59;UBERON:0004537,9.51e-07,59;UBERON:0006965,9.51e-07,59 | |||
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| |||
|short_description=p1@PLXND1 | |||
}} |
Revision as of 21:20, 21 January 2014
Short description: | p1@PLXND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PLXND1_5end |
Coexpression cluster: | C4280_Renal_Mesenchymal_Hepatic_Endothelial_Macrophage_CD14_Monocytederived |
Association with transcript: | 14bp_to_NM_015103, uc003emx.2_5end |
EntrezGene: | PLXND1 |
HGNC: | 9107 |
UniProt: | Q9Y4D7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 8.41e-23 | 36 |
endothelial cell of vascular tree | 1.90e-16 | 24 |
meso-epithelial cell | 1.44e-15 | 45 |
blood vessel endothelial cell | 8.99e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.99e-13 | 18 |
lining cell | 9.11e-11 | 58 |
barrier cell | 9.11e-11 | 58 |
endothelial cell of artery | 3.66e-07 | 9 |
fibroblast | 6.50e-07 | 76 |
mesodermal cell | 7.31e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 5.01e-14 | 203 |
mesoderm | 4.47e-13 | 315 |
mesoderm-derived structure | 4.47e-13 | 315 |
presumptive mesoderm | 4.47e-13 | 315 |
blood vessel endothelium | 8.99e-13 | 18 |
endothelium | 8.99e-13 | 18 |
cardiovascular system endothelium | 8.99e-13 | 18 |
circulatory system | 2.97e-11 | 112 |
cardiovascular system | 1.05e-10 | 109 |
vasculature | 1.75e-10 | 78 |
vascular system | 1.75e-10 | 78 |
simple squamous epithelium | 1.58e-09 | 22 |
vessel | 2.32e-09 | 68 |
splanchnic layer of lateral plate mesoderm | 1.18e-08 | 83 |
epithelial tube | 1.85e-08 | 117 |
squamous epithelium | 9.97e-08 | 25 |
immune system | 3.34e-07 | 93 |
endothelial tube | 3.66e-07 | 9 |
arterial system endothelium | 3.66e-07 | 9 |
endothelium of artery | 3.66e-07 | 9 |
epithelial tube open at both ends | 9.51e-07 | 59 |
blood vessel | 9.51e-07 | 59 |
blood vasculature | 9.51e-07 | 59 |
vascular cord | 9.51e-07 | 59 |