FFCP PHASE1:Hg19::chr3:109056387..109056400,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55211 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19200 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000489281_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_2_at_DPPA4_5end | |||
|id=chr3:109056387..109056400,- | |||
|ontology_enrichment_celltype=CL:0002322!2.13e-12!5;CL:0000128!5.67e-10!7;CL:0000126!5.67e-10!7;CL:0000127!5.67e-10!7;CL:0002453!5.67e-10!7;CL:0000784!1.23e-07!3;CL:0002319!4.21e-07!25;CL:0000708!4.66e-07!3;CL:0002605!5.49e-07!3;CL:0000047!8.41e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.49e-29;5!CL:0000784;5.70e-17;3!CL:0000039;2.95e-13;7!CL:0000586;2.95e-13;7!CL:0002321;1.61e-09;15!CL:0000540;4.19e-09;6!CL:0000404;4.19e-09;6!CL:0000346;5.25e-08;3!CL:1000428;5.25e-08;3!CL:0000708;5.25e-08;3!CL:0000037;6.79e-07;1!CL:0001024;6.79e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.63e-29,5;CL:0000784,5.71e-17,3;CL:0000039,2.91e-13,7;CL:0000586,2.91e-13,7;CL:0000540,4.13e-09,6;CL:0000031,4.13e-09,6;CL:0000404,4.13e-09,6;CL:0000346,5.25e-08,3;CL:1000428,5.25e-08,3;CL:0000708,6.50e-08,3;CL:0000047,6.22e-07,8;CL:0001024,6.60e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.00e-14;10!UBERON:0005564;8.00e-14;10!CL:0000031;4.19e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000473!6.25e-10!8;UBERON:0003210!4.66e-07!3;UBERON:0003135!5.87e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.47e-17;8!UBERON:0003135;1.52e-12;11!UBERON:0002370;9.57e-12;2!UBERON:0005058;9.57e-12;2!UBERON:0009113;9.57e-12;2!UBERON:0000412;5.25e-08;3!UBERON:0003210;5.25e-08;3!UBERON:0001992;5.25e-08;3!UBERON:0000922;5.51e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.69e-17,8;UBERON:0003135,1.61e-12,11;UBERON:0000412,5.25e-08,3;UBERON:0001992,5.25e-08,3;UBERON:0003210,6.50e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0.626909442956176,0.85870796139317,1.23186982565596,0.376627918784408,0,0,0,0,0,0.154816123316076,0,0,0,0,0,6.75281010470149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853460445133014,0.800791974072025,1.14950487990897,0.661044872784862,0.954053754535364,0,0,0,6.60856642895129,1.68152568894461,3.16060901730092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,2.38490624305342,5.71994910780128,4.82894751728434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21085942115945,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.8360592511378,32.3372634704424,31.7209464033785,19.1772951778435,30.0261812541998,23.7235283399289,3.12899064659632,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,3.05172048183296,0.2933531432838,0,0,0,0,0,0.514414748524284,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,1.56640925970192,0.343143423810856,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0,0.275673144969061,0.107420244868274,0.290033387828457,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0.75894634753143,0.699869440489966,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0.842391534340376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93871377475422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,2.1761953271524,0,0,0,0,0,0,0,0,0,0,2.55493176133945,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,18.1651057765472,22.4189281653491,17.4484941972258,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54596118010839,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0.580120991762195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378499274505237,17.1546947983002,0,15.9102574397492,28.0578275528839,8.73001545581027,30.3356122543774,1.06090177505535,0.535928260312357,0,0,0,0.952257725854961,3.61697895081634,2.79336214331361,0.112131862580613,0,0,0,0,0.26940821205835,0,0,0,0,0,0,2.34640942403454,0,0,0,0.201273793591026,0 | |||
|short_description=p2@DPPA4 | |||
}} |
Revision as of 20:26, 21 January 2014
Short description: | p2@DPPA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DPPA4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000489281_5end |
EntrezGene: | DPPA4 |
HGNC: | 19200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.63e-29 | 5 |
plasmacytoid dendritic cell | 5.71e-17 | 3 |
germ line cell | 2.91e-13 | 7 |
germ cell | 2.91e-13 | 7 |
neuron | 4.13e-09 | 6 |
neuroblast | 4.13e-09 | 6 |
electrically signaling cell | 4.13e-09 | 6 |
hair follicle dermal papilla cell | 5.25e-08 | 3 |
stem cell of epidermis | 5.25e-08 | 3 |
leptomeningeal cell | 6.50e-08 | 3 |
neuronal stem cell | 6.22e-07 | 8 |
CD34-positive, CD38-negative hematopoietic stem cell | 6.60e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 2.69e-17 | 8 |
male reproductive organ | 1.61e-12 | 11 |
dermal papilla | 5.25e-08 | 3 |
papillary layer of dermis | 5.25e-08 | 3 |
blood-cerebrospinal fluid barrier | 6.50e-08 | 3 |