FFCP PHASE1:Hg19::chr3:55522284..55522331,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1080 | |||
|description=CAGE_peak_at_chr3:55522284..55522331,- | |||
|id=chr3:55522284..55522331,- | |||
|ontology_enrichment_celltype=CL:0000055!2.13e-22!180;CL:0000057!1.56e-12!75;CL:0000680!6.07e-08!57;CL:0000056!6.07e-08!57;CL:0000355!6.07e-08!57;CL:0000187!4.81e-07!54;CL:0000183!9.42e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.32e-10;55!CL:0000723;6.08e-10;61!CL:0000048;4.11e-09;58!CL:0000349;1.30e-07;19!CL:0000034;4.19e-07;69!CL:0000499;6.90e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.97e-13,76;CL:0000349,9.61e-08,19;CL:0000499,4.07e-07,28;CL:0000048,4.11e-07,427;CL:0000680,6.16e-07,58;CL:0000056,6.16e-07,58;CL:0000355,6.16e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.34e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.48e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.76e-10!83;UBERON:0002329!1.76e-10!83;UBERON:0003077!1.76e-10!83;UBERON:0003059!1.76e-10!83;UBERON:0007282!1.76e-10!83;UBERON:0009618!1.76e-10!83;UBERON:0007285!1.76e-10!83;UBERON:0000475!1.13e-09!365;UBERON:0000481!5.23e-09!347;UBERON:0000486!1.19e-08!82;UBERON:0004290!1.63e-08!70;UBERON:0000468!2.10e-08!659;UBERON:0001134!9.64e-08!61;UBERON:0002036!9.64e-08!61;UBERON:0003082!9.64e-08!61;UBERON:0002385!1.25e-07!63;UBERON:0001015!1.25e-07!63;UBERON:0000383!1.25e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.26e-07,73;UBERON:0002329,2.41e-07,71;UBERON:0003059,2.41e-07,71;UBERON:0007282,2.41e-07,71;UBERON:0004290,2.41e-07,71;UBERON:0009618,2.41e-07,71;UBERON:0001134,3.27e-07,62;UBERON:0002036,3.27e-07,62;UBERON:0003082,3.27e-07,62;UBERON:0003077,4.08e-07,72;UBERON:0007285,4.08e-07,72;UBERON:0002385,9.93e-07,64;UBERON:0001015,9.93e-07,64;UBERON:0000383,9.93e-07,64 | |||
|phase1_expression=1.81678379270557,0.428201047781966,0.422863212287913,4.00293193412522,1.78784437770915,0.872338524100369,5.06599756336621,0.631719873426831,0,0.245733936501509,0,5.24259293112413,9.75937819445278,1.36142988256051,2.31978163009541,1.34465029290355,2.41077811209591,1.46062018077475,0.487932798790507,2.09305798730539,3.87601313364081,3.76145665773705,0.85870796139317,1.09499540058307,0.627713197974014,0.0764134057479513,0,0,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0,0,0,0,0,0.32389366601898,0.257575567634187,0.145398238779565,0.755751887377619,0,0,0.411167888021826,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0.622822248995575,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,7.22878304769133,14.5387994084408,12.4568006306308,3.1811437882044,6.8128881842369,0.945348171640679,4.21285855178871,3.07421749925941,0.523916301990851,0,0,0.649094787309367,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0.286836620748814,1.41867352879343,1.12135520028461,1.06748995729705,1.97334038733728,0.311211035399766,0.808264032418128,0.490385709340376,0.756787138224657,1.72852777344,0.234321431833797,0.624320153660641,0,0.597794722207204,0.352303495931295,0,0.421352420106746,1.02077085627447,0.737005903870608,1.65321249881225,81.9721971524617,97.67043706503,1.82032272387605,2.15585442544872,0.673344455816265,0.125118519871964,1.38532057742091,8.34057479673592,18.3892677479412,40.4140378458745,0.340296549480063,2.15267562826634,12.813443329114,5.51022943014861,2.10063767259082,5.04957393268351,3.09168648054755,4.65292140828975,1.35021065793013,0.389748020644795,3.78650661366172,12.1505866207835,0.969876340912871,3.55009592516614,1.30977727695932,1.52604533079439,0.966304265816484,0.272746120590835,0.860413786167011,0.243947412259191,0,0.464775771478074,0.414644220061482,0.504641701751257,0,15.6449532329816,3.85944562915731,6.90674606762403,4.17931135228781,0.721879481669586,0.354920400119532,1.18009283054671,0.964044119533928,0.441175890929576,0.653638332277218,0.71181185733329,0.539325232640658,0.588664395376038,0.38474715694639,0,1.40241773803446,2.057870056657,1.47008711385542,0,0,0,0,0.122988438543114,4.80389868835872,0,0,0,0,0.651616610620649,3.11980435583874,2.88662684050547,1.15930404975077,3.87448690978212,0.144366447761074,0,0,0,0,0,0,0,0,0.839910640994298,0.141775097242386,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.411309970813294,0,0,0.112131084345361,2.1798003441664,0.22001485746285,1.80980402060889,3.57656445851882,3.381211010224,20.2112968604502,6.24044621468197,1.02882949704857,1.41849132023278,1.0656887160644,2.7165818795048,5.42621605391443,3.29296134712308,2.28015329005615,2.13235169245527,4.75171123760058,5.42590878707255,1.74306691720059,8.29775826811074,0,0,0,0.479249710983165,0,8.5582143024431,1.73737568001095,1.2328579353023,3.58121926479791,0,0,0,0,0.508189248444927,1.30139853857622,0,0.335032530668698,0,0,0,0,1.47229790062968,0.500170521059677,0.271265023699736,1.24782516918484,1.24900292158013,3.15404830067869,1.87426263988341,0.300946099727719,0,1.03473071292505,3.98535359121262,2.02806085395873,1.99832313276591,0,1.37257369524342,0,0,0,2.72814814301633,3.32870879020994,5.44302527993425,1.24053903909388,0,0,0.384417447767103,0,2.57366273829772,1.48418066444991,2.92998418225046,1.77561725313127,1.72467027628999,9.8658341544888,1.51073491997947,0,1.80455823272956,0.184161977871793,4.82220682291348,3.64182336013434,10.0965799518757,0,0,0,0,0.422206515571503,0,0,0.431831832204279,0,0.812839312631559,0.501689773854853,0,0,0.223874754722178,0,0,0,0.328014645699706,0.325378394664303,0.412164046590889,0.640986253728404,0.577566499444116,0.574265537996172,0,0,6.38026740728005,0,0.460511024178389,1.37836572484531,0.644521469209642,1.30515024522806,1.19317278382541,1.24644849905432,0,0,0.382838137483752,0,0.929691098594572,8.81474571125792,3.485186350803,0,0.532306030317022,1.73986598415015,1.48259375283136,0.429374660225974,0.744316738719335,1.2655176988749,3.0500831027812,1.27948895655667,1.71175595213568,0.95460974377781,0,2.15846949099978,0.823611089208164,2.12062324222236,0.404364963146632,0,0,2.43816869544795,1.46228093778771,1.05650146756755,4.50449707646353,3.53513579884282,0,0.551365343546124,0,0.438450885253763,1.15755106853338,0.655894752046633,1.42037263873893,1.54911749049875,0.281695602532241,0.717056761020258,1.67023369722306,2.1400263088875,0,0.422215270595328,0.329294892959902,1.51789269506286,2.44954304171488,0,0,0,0.376575203107117,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.854592569019785,6.73735898684351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.80822055099881,0.95497793895076,2.67268212749375,0.307160702099232,0,0.140669416410513,1.11308705022906,0,0,0,0.552567831062295,0,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| |||
|short_description=p@chr3:55522284..55522331,- | |||
}} |
Revision as of 19:19, 21 January 2014
Short description: | p@chr3:55522284..55522331, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:55522284..55522331, - |
Coexpression cluster: | C1080_Fibroblast_mesenchymal_neuroectodermal_Hair_Mesenchymal_Smooth_alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.97e-13 | 76 |
extraembryonic cell | 9.61e-08 | 19 |
stromal cell | 4.07e-07 | 28 |
multi fate stem cell | 4.11e-07 | 427 |
muscle precursor cell | 6.16e-07 | 58 |
myoblast | 6.16e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.16e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.26e-07 | 73 |
somite | 2.41e-07 | 71 |
presomitic mesoderm | 2.41e-07 | 71 |
presumptive segmental plate | 2.41e-07 | 71 |
dermomyotome | 2.41e-07 | 71 |
trunk paraxial mesoderm | 2.41e-07 | 71 |
skeletal muscle tissue | 3.27e-07 | 62 |
striated muscle tissue | 3.27e-07 | 62 |
myotome | 3.27e-07 | 62 |
paraxial mesoderm | 4.08e-07 | 72 |
presumptive paraxial mesoderm | 4.08e-07 | 72 |
muscle tissue | 9.93e-07 | 64 |
musculature | 9.93e-07 | 64 |
musculature of body | 9.93e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.48e-08 | 14 |