FFCP PHASE1:Hg19::chr3:5163961..5164039,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55207 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25564 | |||
|TSSclassifier=strong | |||
|UniProt=B4DI85,Q9NVJ2,F2Z344 | |||
|association_with_transcript=0bp_to_ENST00000419534,ENST00000438743,ENST00000444332,ENST00000455168_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_ARL8B_5end | |||
|id=chr3:5163961..5164039,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.78e-32!71;CL:0000839!5.12e-30!70;CL:0002009!7.31e-30!65;CL:0000766!7.78e-29!76;CL:0002194!9.86e-29!63;CL:0000576!9.86e-29!63;CL:0000040!9.86e-29!63;CL:0000559!9.86e-29!63;CL:0000763!3.75e-28!112;CL:0000049!3.75e-28!112;CL:0002057!4.27e-25!42;CL:0000860!3.05e-21!45;CL:0000037!9.80e-17!172;CL:0000566!9.80e-17!172;CL:0002032!1.37e-16!165;CL:0000837!1.37e-16!165;CL:0000738!2.15e-16!140;CL:0002031!1.43e-15!124;CL:0000988!4.22e-15!182;CL:0002087!1.10e-13!119;CL:0000134!4.74e-07!358;CL:0002320!8.25e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.93e-20;33!CL:0002057;2.93e-20;33!CL:0000473;5.74e-20;39!CL:0000234;5.74e-20;39!CL:0000576;6.93e-18;48!CL:0000766;2.18e-14;69!CL:0000763;1.32e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,3.49e-36,67;CL:0002009,1.36e-33,61;CL:0000839,1.50e-33,66;CL:0002194,1.90e-32,59;CL:0000576,1.90e-32,59;CL:0000040,1.90e-32,59;CL:0000559,1.90e-32,59;CL:0000766,4.75e-32,72;CL:0000763,1.64e-30,108;CL:0000049,1.64e-30,108;CL:0000473,1.09e-28,48;CL:0000234,1.09e-28,48;CL:0000860,4.27e-25,42;CL:0002057,4.27e-25,42;CL:0000037,5.70e-18,168;CL:0002032,7.55e-18,161;CL:0000837,7.55e-18,161;CL:0000738,8.78e-18,136;CL:0002031,5.05e-17,120;CL:0000988,1.10e-16,177;CL:0002087,4.76e-15,115;CL:0000134,7.37e-08,354;CL:0002320,1.34e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.22e-18;42!CL:0000049;5.79e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.86e-28!80;UBERON:0002390!4.91e-26!102;UBERON:0003061!4.91e-26!102;UBERON:0001474!2.33e-25!86;UBERON:0004765!2.09e-24!101;UBERON:0001434!2.09e-24!101;UBERON:0002193!2.50e-24!112;UBERON:0002405!9.19e-18!115;UBERON:0007023!6.72e-12!115;UBERON:0002204!6.81e-11!167;UBERON:0001049!3.51e-09!57;UBERON:0005068!3.51e-09!57;UBERON:0006241!3.51e-09!57;UBERON:0007135!3.51e-09!57;UBERON:0003080!1.11e-08!42;UBERON:0002780!2.51e-08!41;UBERON:0001890!2.51e-08!41;UBERON:0006240!2.51e-08!41;UBERON:0002616!4.23e-08!59;UBERON:0001893!2.85e-07!34;UBERON:0002020!3.16e-07!34;UBERON:0003528!3.16e-07!34;UBERON:0002791!7.40e-07!33;UBERON:0001869!8.08e-07!32 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.61e-31,76;UBERON:0004765,8.82e-29,90;UBERON:0002390,2.00e-28,98;UBERON:0003061,2.00e-28,98;UBERON:0001474,5.09e-28,82;UBERON:0002405,3.97e-27,93;UBERON:0001434,9.93e-27,100;UBERON:0002193,1.87e-26,108;UBERON:0002204,2.59e-12,167;UBERON:0007023,1.23e-11,114;UBERON:0001049,7.63e-09,56;UBERON:0005068,7.63e-09,56;UBERON:0006241,7.63e-09,56;UBERON:0007135,7.63e-09,56;UBERON:0002780,2.51e-08,41;UBERON:0001890,2.51e-08,41;UBERON:0003080,2.51e-08,41;UBERON:0006240,2.51e-08,41;UBERON:0000073,5.13e-08,53;UBERON:0002616,5.13e-08,53;UBERON:0001893,2.85e-07,34;UBERON:0003528,3.16e-07,34;UBERON:0002020,3.16e-07,34;UBERON:0003081,6.39e-07,203;UBERON:0001869,8.08e-07,32 | |||
|phase1_expression=115.547449216074,96.3452357509424,113.468295297257,81.0593716660356,74.1955416749298,69.7870819280295,60.7919707603945,45.4838308867318,55.1101675501659,25.5563293961569,11.1648186875588,35.6059436572181,41.9389495383241,70.1755221283464,61.3085145096644,69.2494900845329,69.9125652507813,74.4916292195121,68.7985246294615,19.3300061180557,18.9720642857155,13.7920077450359,38.6418582626927,38.7354622956262,37.6627918784408,42.0273731613732,40.1471882410235,42.2676895654458,75.9193054318385,89.4322497566506,141.037488340945,34.9380065301992,31.325415552938,52.8748234538506,49.5015411708127,39.5230466315032,69.2897036830239,393.890735466165,379.630639060978,360.889078000462,135.692777389394,130.529147405649,152.484736039438,268.841343503415,355.959138954858,284.793687834496,545.510949617642,710.498110501715,818.244231904864,685.570970903684,673.446497465006,772.114480586231,770.506596446342,820.411032835043,887.043487192939,434.463319664332,541.445801714766,566.527904286058,725.112741026668,787.88076147181,816.433509645376,374.71107701211,450.388938909645,396.389017995406,897.907384316839,984.980750063819,1034.50775558165,673.597671553329,608.570565796375,656.561877543568,696.814827531007,968.201905011308,1056.03498689023,100.13500571186,111.829861781613,104.61966410868,131.424498441399,129.302304736537,110.257752474197,80.6586064787734,75.3894206584552,77.8149295037341,68.6385353399158,51.3370294586404,58.7076107549946,61.8758822721435,49.2487064054295,43.6811854365407,50.9004552044344,40.0702576904853,76.2745378606661,90.4345271631246,87.1582960125522,97.8067831484791,147.974260627126,55.8374259723163,61.3734482755159,62.8817220398664,50.9891717518783,49.1528296448594,54.4290185278096,45.9244371562691,35.068811113424,54.1454820461944,56.5643342351687,56.4911431188234,47.6614800226427,58.4096417949079,52.2838577190711,49.8246850949139,48.3612531125235,55.6421924611301,55.1626014962865,55.3809514145706,39.7234990458912,50.7625855285097,53.650869104269,52.5749991588424,47.5677020996665,48.4219429772627,44.2736748622365,52.2748624446606,46.377136675954,39.5478628467153,43.7257542933211,49.7232229292435,49.2676798152628,81.2475175195672,82.6390204971038,68.7915918443295,43.8852359365131,50.9732653374763,53.3186882887521,60.7217776006071,41.1097086721429,67.353631316783,66.8040195522923,42.3372337163293,49.2526397424794,49.6673850316143,44.620071132108,58.7441153607241,22.5863078741376,34.8537376217364,175.904687360838,193.632267876785,170.585063345704,59.8611467006408,59.4874707211333,54.9757101967756,43.3302048059417,28.3877416385021,37.4911741736202,40.1368638766047,33.9794543330024,52.822664052493,42.4259782069725,73.9071931224281,78.624344053763,72.9690935826981,39.4772730766964,53.2190474002959,45.1514806464114,45.2225588825418,41.3172393419697,54.4728342532887,49.3964619777574,52.8147843466781,36.795992991812,29.427235446612,39.9379801768288,63.2546003693104,42.6558290563158,27.0378312328371,65.1033256720867,70.1533034621772,65.6749536833565,57.0804875290139,69.8696712930763,37.0047216093923,44.8345782064761,69.8069162020563,68.4664277879486,68.1636000672622,53.6155042212145,34.3581360753994,58.1937683724799,23.6664646152135,87.7169815893201,31.9464220064892,88.3241702061144,37.6964740646485,44.8388055899724,43.2588484642925,60.6337888627033,53.4329280306191,82.0406702535578,103.356248583539,75.1691465006813,24.5743567723267,15.8095991199572,41.0740118047921,38.9118596801809,65.9412594852355,63.6517550277215,56.7002422228186,95.7016435235022,65.3369375001721,39.8244991229274,46.3419533736291,57.2216133130817,30.0091096084402,47.7133210373972,31.6897864256124,51.5543692038504,44.8945043761768,63.0417423392955,32.8163906517349,64.8031286441787,46.7157104206366,38.3410359917943,48.5625113457226,38.8293756391017,145.718683285126,101.46155685979,110.706573820155,28.2978998220661,28.2288406524764,29.7456493745967,34.8301144851645,40.8759778418518,30.6580981623697,28.1609158193669,47.5998294262735,20.7202382028721,73.8345005570847,84.4598993553415,35.9652672121125,41.9775878294473,33.2595221239205,37.2793627835492,40.7434560452799,37.0142165813311,43.1460186112526,41.9913935368241,35.7814855960143,27.311751821112,18.231430594448,21.4018485892328,19.1111324801205,54.5046649733873,68.7979051674338,45.4908228144681,35.317047953172,68.9965140226867,64.6810644825441,106.018775704732,59.5729292265384,63.0316657020925,86.199842442591,37.7937634159977,22.8785652761507,38.9694623468238,61.3271842318156,76.4330599475199,58.757144238757,55.5582615091933,75.9114067416047,60.8457386428642,45.4997665910282,177.276244382926,214.347906867542,173.303935228657,105.919232405058,105.660758637083,84.6397330537047,89.4689641801454,65.9739040426694,36.4213545206951,765.598671690296,145.456012989849,95.7855893798367,86.039612189926,85.8448547299384,82.8012541569884,66.8479744726986,31.6487107467127,46.1895604261304,63.0332530271373,77.4885089237307,91.7502848744156,34.7606361470618,37.4925659196621,67.2512080978112,122.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| |||
|short_description=p1@ARL8B | |||
}} |
Revision as of 17:05, 21 January 2014
Short description: | p1@ARL8B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARL8B_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000419534, ENST00000438743, ENST00000444332, ENST00000455168_5end |
EntrezGene: | ARL8B |
HGNC: | 25564 |
UniProt: | B4DI85Q9NVJ2F2Z344 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 3.49e-36 | 67 |
macrophage dendritic cell progenitor | 1.36e-33 | 61 |
myeloid lineage restricted progenitor cell | 1.50e-33 | 66 |
monopoietic cell | 1.90e-32 | 59 |
monocyte | 1.90e-32 | 59 |
monoblast | 1.90e-32 | 59 |
promonocyte | 1.90e-32 | 59 |
myeloid leukocyte | 4.75e-32 | 72 |
myeloid cell | 1.64e-30 | 108 |
common myeloid progenitor | 1.64e-30 | 108 |
defensive cell | 1.09e-28 | 48 |
phagocyte | 1.09e-28 | 48 |
classical monocyte | 4.27e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.27e-25 | 42 |
hematopoietic stem cell | 5.70e-18 | 168 |
hematopoietic oligopotent progenitor cell | 7.55e-18 | 161 |
hematopoietic multipotent progenitor cell | 7.55e-18 | 161 |
leukocyte | 8.78e-18 | 136 |
hematopoietic lineage restricted progenitor cell | 5.05e-17 | 120 |
hematopoietic cell | 1.10e-16 | 177 |
nongranular leukocyte | 4.76e-15 | 115 |
mesenchymal cell | 7.37e-08 | 354 |
connective tissue cell | 1.34e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.61e-31 | 76 |
skeletal element | 8.82e-29 | 90 |
hematopoietic system | 2.00e-28 | 98 |
blood island | 2.00e-28 | 98 |
bone element | 5.09e-28 | 82 |
immune system | 3.97e-27 | 93 |
skeletal system | 9.93e-27 | 100 |
hemolymphoid system | 1.87e-26 | 108 |
musculoskeletal system | 2.59e-12 | 167 |
adult organism | 1.23e-11 | 114 |
neural tube | 7.63e-09 | 56 |
neural rod | 7.63e-09 | 56 |
future spinal cord | 7.63e-09 | 56 |
neural keel | 7.63e-09 | 56 |
regional part of forebrain | 2.51e-08 | 41 |
forebrain | 2.51e-08 | 41 |
anterior neural tube | 2.51e-08 | 41 |
future forebrain | 2.51e-08 | 41 |
regional part of nervous system | 5.13e-08 | 53 |
regional part of brain | 5.13e-08 | 53 |
telencephalon | 2.85e-07 | 34 |
brain grey matter | 3.16e-07 | 34 |
gray matter | 3.16e-07 | 34 |
lateral plate mesoderm | 6.39e-07 | 203 |
cerebral hemisphere | 8.08e-07 | 32 |