FFCP PHASE1:Hg19::chr21:47532318..47532355,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000460886_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_8_at_COL6A2_5end | |||
|id=chr21:47532318..47532355,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.51e-41!180;CL:0000057!1.68e-23!75;CL:0000680!4.49e-20!57;CL:0000056!4.49e-20!57;CL:0000355!4.49e-20!57;CL:0000187!3.61e-19!54;CL:0000183!1.35e-18!59;CL:0000393!1.42e-17!60;CL:0000211!1.42e-17!60;CL:0000192!1.27e-15!42;CL:0000514!1.27e-15!42;CL:0000048!1.38e-13!430;CL:0000723!1.99e-12!436;CL:0000359!2.72e-12!32;CL:0000034!6.56e-12!444;CL:0002620!1.05e-09!23;CL:0000499!7.82e-08!27;CL:0002334!4.64e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000192;4.82e-14;43!CL:0000359;7.17e-14;32!CL:0000187;4.47e-13;55!CL:0000723;3.67e-12;61!CL:0000134;4.22e-12;55!CL:0000048;5.83e-11;58!CL:0002620;7.35e-11;23!CL:0000393;8.43e-11;61!CL:0000211;8.43e-11;61!CL:0000057;1.07e-09;73!CL:0002320;2.31e-09;188!CL:0002334;9.02e-09;12!CL:0000034;1.48e-08;69!CL:0002570;7.81e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,8.48e-25,58;CL:0000056,8.48e-25,58;CL:0000355,8.48e-25,58;CL:0000057,1.07e-24,76;CL:0000187,1.37e-23,55;CL:0000048,5.12e-22,427;CL:0000723,6.03e-21,433;CL:0000034,1.42e-19,441;CL:0000393,1.46e-19,61;CL:0000211,1.46e-19,61;CL:0000192,2.04e-19,43;CL:0000514,2.04e-19,43;CL:0000359,2.17e-14,32;CL:0002620,8.24e-11,23;CL:0002320,5.93e-10,361;CL:0002334,6.87e-09,12;CL:0000134,6.99e-08,354;CL:0002570,7.81e-08,8;CL:0000222,4.24e-07,121;CL:0000136,9.14e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;4.82e-14;43!CL:0000355;5.38e-13;58 | |||
|ontology_enrichment_disease=DOID:2394!1.39e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.74e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.05e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.98e-26!83;UBERON:0002329!5.98e-26!83;UBERON:0003077!5.98e-26!83;UBERON:0003059!5.98e-26!83;UBERON:0007282!5.98e-26!83;UBERON:0009618!5.98e-26!83;UBERON:0007285!5.98e-26!83;UBERON:0004290!1.02e-24!70;UBERON:0000486!1.34e-20!82;UBERON:0002385!1.56e-20!63;UBERON:0001015!1.56e-20!63;UBERON:0000383!1.56e-20!63;UBERON:0001134!3.59e-20!61;UBERON:0002036!3.59e-20!61;UBERON:0003082!3.59e-20!61;UBERON:0005256!3.29e-16!143;UBERON:0003102!1.20e-10!95;UBERON:0002100!3.26e-10!216;UBERON:0002199!4.75e-10!45;UBERON:0002416!4.75e-10!45;UBERON:0001013!4.62e-09!14;UBERON:0004872!3.26e-08!84;UBERON:0002097!1.14e-07!40;UBERON:0003104!1.37e-07!238;UBERON:0009142!1.37e-07!238;UBERON:0000475!1.51e-07!365;UBERON:0001637!1.52e-07!42;UBERON:0003509!1.52e-07!42;UBERON:0004572!1.52e-07!42;UBERON:0004573!1.70e-07!33;UBERON:0004571!1.70e-07!33;UBERON:0007100!2.45e-07!27;UBERON:0000948!7.94e-07!24;UBERON:0005498!7.94e-07!24;UBERON:0004140!7.94e-07!24;UBERON:0009881!7.94e-07!24;UBERON:0004141!7.94e-07!24;UBERON:0003084!7.94e-07!24;UBERON:0007005!7.94e-07!24;UBERON:0004139!7.94e-07!24;UBERON:0004291!7.94e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.66e-11;14!UBERON:0002385;3.69e-11;31!UBERON:0001015;3.69e-11;31!UBERON:0000383;3.69e-11;31!UBERON:0002384;2.07e-09;198!UBERON:0004573;3.53e-09;33!UBERON:0004571;3.53e-09;33!UBERON:0002199;1.48e-08;46!UBERON:0002416;1.48e-08;46!UBERON:0002067;1.43e-07;9!UBERON:0001637;1.49e-07;42!UBERON:0003509;1.49e-07;42!UBERON:0004572;1.49e-07;42!UBERON:0003102;2.70e-07;50!UBERON:0002097;2.78e-07;41!UBERON:0002204;5.95e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.41e-30,73;UBERON:0002329,1.80e-30,71;UBERON:0003059,1.80e-30,71;UBERON:0007282,1.80e-30,71;UBERON:0004290,1.80e-30,71;UBERON:0009618,1.80e-30,71;UBERON:0003077,1.00e-29,72;UBERON:0007285,1.00e-29,72;UBERON:0007503,1.10e-25,78;UBERON:0000486,2.39e-25,83;UBERON:0001134,1.66e-24,62;UBERON:0002036,1.66e-24,62;UBERON:0003082,1.66e-24,62;UBERON:0002385,1.85e-24,64;UBERON:0001015,1.85e-24,64;UBERON:0000383,1.85e-24,64;UBERON:0005256,4.41e-19,122;UBERON:0003104,7.90e-17,160;UBERON:0009142,7.90e-17,160;UBERON:0000926,1.01e-12,315;UBERON:0004120,1.01e-12,315;UBERON:0006603,1.01e-12,315;UBERON:0002199,2.31e-12,46;UBERON:0002416,2.31e-12,46;UBERON:0001013,1.50e-11,14;UBERON:0003102,2.88e-11,99;UBERON:0000490,5.07e-11,148;UBERON:0001637,3.45e-10,42;UBERON:0003509,3.45e-10,42;UBERON:0004572,3.45e-10,42;UBERON:0004573,3.66e-10,33;UBERON:0004571,3.66e-10,33;UBERON:0002384,3.87e-10,371;UBERON:0002097,2.85e-09,41;UBERON:0002100,6.26e-09,199;UBERON:0004872,1.31e-08,83;UBERON:0002204,1.14e-07,167;UBERON:0002067,1.89e-07,9;UBERON:0004016,1.89e-07,9;UBERON:0010083,1.89e-07,9;UBERON:0000479,3.71e-07,773;UBERON:0007500,8.35e-07,59;UBERON:0001981,8.35e-07,59;UBERON:0004537,8.35e-07,59;UBERON:0006965,8.35e-07,59 | |||
|phase1_expression=3.27021082687002,10.7050261945492,3.66481450649525,4.00293193412522,9.38618298297304,6.10636966870258,7.59899634504932,4.42203911398782,9.66386824339403,0.245733936501509,0,0.218441372130172,0.527533956456907,4.45558870656168,6.62794751455832,18.8251041006497,7.23233433628772,12.4152715365853,8.78279037822912,0.61560529038394,4.89601658986207,5.32873026512749,0,0.821246550437305,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786021525498329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0.802320587350522,0.289648807765598,2.43806866313962,0.670700859703636,1.02290049474824,4.69870898099936,3.00802746381534,7.9665585428453,3.1811437882044,8.27279279514481,0.283604451492204,0.886917589850256,0.527008714158756,0.392937226493138,0,0,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,5.4666914686485,3.41902381494365,2.38336525463794,9.75244510545967,2.83734705758686,1.12135520028461,0,2.96001058100592,1.24484414159907,3.50247747381189,3.59616186849609,2.4217188423189,6.33793516927999,0.70296429550139,5.30672130611545,1.1409436430889,7.02408798593465,5.40198693761318,5.6655530528846,4.3539750077697,2.65400422631361,10.563751288812,7.23280468230358,7.12801714369232,17.0614181202204,0,11.4978902690598,1.5150250255866,5.25497783462249,0.831192346452549,0.438977620880838,15.63087758575,7.96261712204963,0.453728732640084,4.48474089222155,4.27114777637135,3.60284231971255,4.50136644126603,4.12210116953756,3.34932702059318,2.97786970130544,5.06328996723799,3.02054715999716,2.77677151668526,3.77404584433427,12.1234542614109,6.74518225781567,2.41805035746337,1.69560592310488,0,0,0.286804595389004,0.243947412259191,0,0.116193942869518,0.414644220061482,0.252320850875628,0,17.2094485562798,30.8755650332585,4.14404764057442,6.03678306441573,7.21879481669586,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.8231480226628,20.5812195939759,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0.651616610620649,4.15973914111831,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0.16798212819886,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,1.71072446022705,0.514137463516618,0,0,0.448524337381443,0.43596006883328,0.66004457238855,2.06834745212444,17.8828222925941,7.607724773004,1.86156681609409,2.08014873822732,0.514414748524284,2.83698264046557,1.5985330740966,3.0025378668211,5.42621605391443,0.823240336780769,2.28015329005615,1.77695974371273,2.37585561880029,0.301439377059586,0,0.299918973546171,0,0,0,2.15662369942424,4.59447743336456,0,2.60606352001643,5.13690806375959,1.07436577943937,0,0,2.37190332345469,0.513372145118994,0,0,0,0,0.637938751653163,0,0,0,3.43536176813592,10.5035809422532,9.76554085319048,3.95144636908534,3.92543775353756,1.57702415033935,2.92853537481783,2.10662269809403,34.1111256083977,4.1389228517002,1.99267679560631,3.31864503375066,5.38678409702114,3.72022199179207,12.3531632571908,0,0.215714200818617,0.106727557803444,0,0,1.5119514666484,2.72918588600655,1.84154367945675,13.1910244383545,3.58789617915963,3.07024349440022,3.53878626515936,5.93672265779964,9.09837193435668,9.94345661753512,2.54594183642808,10.3850885836724,11.504827467536,0.120859449591622,0,0,2.75554675595056,9.28664956834257,11.2766996865105,0,0.15403067420883,0.784349769176855,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,0.457847324091717,0.41254749960294,0,0.650060246036521,4.82051789532479,3.28680442193215,10.3212573466812,8.59620578466325,5.09995318192763,4.29680979473094,13.4865525340233,5.36927752721436,2.40386496246191,0,0,0,0,0.929691098594572,7.870308670766,1.3940745403212,2.46426864140871,1.06461206063404,0,3.89180860118232,1.43124886741991,2.232950216158,1.58189712359363,4.5751246541718,1.27948895655667,4.70732886837312,5.40945521474092,15.6989728039846,2.33834194858309,10.157870100234,3.53437207037059,1.81964233415984,6.34041284692033,4.63384301862879,1.95053495635836,7.31140468893853,11.6215161432431,1.77449884830381,6.78746073377821,12.4308928282267,3.30819206127675,3.3171948762061,10.9612721313441,3.47265320560013,3.9353685122798,1.42037263873893,3.0982349809975,3.09865162785466,0.573645408816206,1.17898849215745,1.78335525740625,2.12856638442359,8.02209014131124,7.90307743103764,0,6.99869440489966,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0.213648142254946,0,0.490080431962063,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,2.14870036263921,0,0.307160702099232,0,0.140669416410513,1.55832187032068,0,0,5.18044769452781,1.38141957765574,0,0,0,8.08702927920699,0.0898683511473268,0,0,1.57829449019094,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0.291604613383254,1.04174996959975,0,0,0,0,0.295547618953547,0.219385397153973,0,0,1.76985594558733,0.797594390929008,0,0.0897576444097721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| |||
|short_description=p8@COL6A2 | |||
}} |
Revision as of 14:23, 21 January 2014
Short description: | p8@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | 0bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 8.48e-25 | 58 |
myoblast | 8.48e-25 | 58 |
multi-potent skeletal muscle stem cell | 8.48e-25 | 58 |
fibroblast | 1.07e-24 | 76 |
muscle cell | 1.37e-23 | 55 |
multi fate stem cell | 5.12e-22 | 427 |
somatic stem cell | 6.03e-21 | 433 |
stem cell | 1.42e-19 | 441 |
electrically responsive cell | 1.46e-19 | 61 |
electrically active cell | 1.46e-19 | 61 |
smooth muscle cell | 2.04e-19 | 43 |
smooth muscle myoblast | 2.04e-19 | 43 |
vascular associated smooth muscle cell | 2.17e-14 | 32 |
skin fibroblast | 8.24e-11 | 23 |
connective tissue cell | 5.93e-10 | 361 |
preadipocyte | 6.87e-09 | 12 |
mesenchymal cell | 6.99e-08 | 354 |
mesenchymal stem cell of adipose | 7.81e-08 | 8 |
mesodermal cell | 4.24e-07 | 121 |
fat cell | 9.14e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.05e-09 | 14 |