FFCP PHASE1:Hg19::chr20:62679771..62679782,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11194 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-321bp_to_AF086136_5end | |||
|coexpression_cluster_id=C357 | |||
|description=CAGE_peak_4_at_SOX18_5end | |||
|id=chr20:62679771..62679782,- | |||
|ontology_enrichment_celltype=CL:0002139!7.76e-47!24;CL:0000071!2.95e-39!18;CL:0002546!2.95e-39!18;CL:0000115!7.23e-38!35;CL:0002078!6.38e-29!44;CL:1000413!2.24e-23!9;CL:0000213!5.20e-21!57;CL:0000215!5.20e-21!57;CL:0002544!4.04e-20!6;CL:0002144!1.22e-11!3;CL:0002618!6.04e-10!3;CL:0005020!1.89e-09!6;CL:0002138!1.89e-09!6;CL:0005022!1.89e-09!6;CL:0002543!9.00e-09!6;CL:0000076!1.02e-08!62;CL:0002545!6.19e-08!2;CL:0000222!2.65e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0002144;5.00e-67;3!CL:0002139;1.02e-44;24!CL:0000071;4.93e-44;18!CL:0000115;1.49e-30;36!CL:0002078;5.20e-24;45!CL:0002545;2.19e-12;2!CL:0000213;6.09e-12;58!CL:0000215;6.09e-12;58!CL:1000413;8.37e-11;9!CL:0000076;1.28e-08;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,5.01e-67,3;CL:0002139,1.09e-44,24;CL:0000071,5.51e-44,18;CL:0002546,5.51e-44,18;CL:0000115,7.95e-39,36;CL:0002078,4.54e-31,45;CL:0000213,4.21e-24,58;CL:0000215,4.21e-24,58;CL:0000076,1.16e-12,63;CL:0002545,2.07e-12,2;CL:0000222,1.78e-11,121;CL:1000413,8.37e-11,9 | |||
|ontology_enrichment_development_v019=CL:0002546;4.93e-44;18!CL:0000222;4.10e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.95e-39!18;UBERON:0004638!2.95e-39!18;UBERON:0004852!2.95e-39!18;UBERON:0000487!2.15e-31!22;UBERON:0006914!3.77e-27!25;UBERON:0003915!2.24e-23!9;UBERON:0004700!2.24e-23!9;UBERON:0001917!2.24e-23!9;UBERON:0000055!4.46e-18!69;UBERON:0007023!1.98e-15!115;UBERON:0002049!4.71e-15!79;UBERON:0007798!4.71e-15!79;UBERON:0001981!1.02e-13!60;UBERON:0007500!1.02e-13!60;UBERON:0004537!1.02e-13!60;UBERON:0006965!1.02e-13!60;UBERON:0004872!2.56e-13!84;UBERON:0001915!1.22e-11!3;UBERON:0001982!1.22e-11!3;UBERON:0002465!1.60e-11!10;UBERON:0001009!6.47e-11!113;UBERON:0004535!2.85e-10!110;UBERON:0000477!4.27e-09!286;UBERON:0001638!8.15e-09!9;UBERON:0003920!8.15e-09!9;UBERON:0004582!8.15e-09!9;UBERON:0004111!1.15e-08!241;UBERON:0003914!4.09e-08!118;UBERON:0005800!6.19e-08!2;UBERON:0001515!6.19e-08!2;UBERON:0001473!4.50e-07!8;UBERON:0004536!4.50e-07!8;UBERON:0006558!4.50e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0010523;5.00e-67;3!UBERON:0001915;5.00e-67;3!UBERON:0001982;5.00e-67;3!UBERON:0004638;4.93e-44;18!UBERON:0001986;4.93e-44;18!UBERON:0004852;4.93e-44;18!UBERON:0000487;4.45e-36;22!UBERON:0006914;8.89e-32;25!UBERON:0002171;4.59e-23;1!UBERON:0006518;4.59e-23;1!UBERON:0008949;4.59e-23;1!UBERON:0000101;4.59e-23;1!UBERON:0002167;4.59e-23;1!UBERON:0000490;4.38e-22;33!UBERON:0000055;8.16e-13;65!UBERON:0005800;2.19e-12;2!UBERON:0001515;2.19e-12;2!UBERON:0003914;3.30e-11;74!UBERON:0003915;8.37e-11;9!UBERON:0004700;8.37e-11;9!UBERON:0001917;8.37e-11;9!UBERON:0002049;2.08e-10;75!UBERON:0007798;2.08e-10;75!UBERON:0007500;8.19e-10;56!UBERON:0001981;8.19e-10;56!UBERON:0004537;8.19e-10;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,5.01e-67,3;UBERON:0001915,5.01e-67,3;UBERON:0001982,5.01e-67,3;UBERON:0004638,5.51e-44,18;UBERON:0001986,5.51e-44,18;UBERON:0004852,5.51e-44,18;UBERON:0000487,4.88e-36,22;UBERON:0006914,9.64e-32,25;UBERON:0002171,5.13e-23,1;UBERON:0006518,5.13e-23,1;UBERON:0008949,5.13e-23,1;UBERON:0000101,5.13e-23,1;UBERON:0002167,5.13e-23,1;UBERON:0000055,8.50e-16,68;UBERON:0002049,9.23e-14,78;UBERON:0007798,9.23e-14,78;UBERON:0007500,1.62e-13,59;UBERON:0001981,1.62e-13,59;UBERON:0004537,1.62e-13,59;UBERON:0006965,1.62e-13,59;UBERON:0005800,2.07e-12,2;UBERON:0001515,2.07e-12,2;UBERON:0003915,8.37e-11,9;UBERON:0004700,8.37e-11,9;UBERON:0001917,8.37e-11,9;UBERON:0004535,8.31e-10,109;UBERON:0004872,1.32e-09,83;UBERON:0001009,1.54e-09,112;UBERON:0003914,3.96e-09,117;UBERON:0004111,3.89e-07,240;UBERON:0000025,4.48e-07,192 | |||
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|short_description=p4@SOX18 | |||
}} |
Revision as of 12:53, 21 January 2014
Short description: | p4@SOX18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SOX18_5end |
Coexpression cluster: | C357_Endothelial_Lymphatic_Renal_Hepatic_seminal_breast_heart |
Association with transcript: | -321bp_to_AF086136_5end |
EntrezGene: | SOX18 |
HGNC: | 11194 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 5.01e-67 | 3 |
endothelial cell of vascular tree | 1.09e-44 | 24 |
blood vessel endothelial cell | 5.51e-44 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.51e-44 | 18 |
endothelial cell | 7.95e-39 | 36 |
meso-epithelial cell | 4.54e-31 | 45 |
lining cell | 4.21e-24 | 58 |
barrier cell | 4.21e-24 | 58 |
squamous epithelial cell | 1.16e-12 | 63 |
thoracic aorta endothelial cell | 2.07e-12 | 2 |
mesodermal cell | 1.78e-11 | 121 |
endothelial cell of artery | 8.37e-11 | 9 |
Ontology term | p-value | n |
---|---|---|
microcirculatory vessel | 5.01e-67 | 3 |
endothelium of capillary | 5.01e-67 | 3 |
capillary | 5.01e-67 | 3 |
blood vessel endothelium | 5.51e-44 | 18 |
endothelium | 5.51e-44 | 18 |
cardiovascular system endothelium | 5.51e-44 | 18 |
simple squamous epithelium | 4.88e-36 | 22 |
squamous epithelium | 9.64e-32 | 25 |
lower lobe of right lung | 5.13e-23 | 1 |
right lung lobe | 5.13e-23 | 1 |
lower lobe of lung | 5.13e-23 | 1 |
lobe of lung | 5.13e-23 | 1 |
right lung | 5.13e-23 | 1 |
vessel | 8.50e-16 | 68 |
vasculature | 9.23e-14 | 78 |
vascular system | 9.23e-14 | 78 |
epithelial tube open at both ends | 1.62e-13 | 59 |
blood vessel | 1.62e-13 | 59 |
blood vasculature | 1.62e-13 | 59 |
vascular cord | 1.62e-13 | 59 |
segment of aorta | 2.07e-12 | 2 |
thoracic aorta | 2.07e-12 | 2 |
endothelial tube | 8.37e-11 | 9 |
arterial system endothelium | 8.37e-11 | 9 |
endothelium of artery | 8.37e-11 | 9 |
cardiovascular system | 8.31e-10 | 109 |
splanchnic layer of lateral plate mesoderm | 1.32e-09 | 83 |
circulatory system | 1.54e-09 | 112 |
epithelial tube | 3.96e-09 | 117 |
anatomical conduit | 3.89e-07 | 240 |
tube | 4.48e-07 | 192 |