FFCP PHASE1:Hg19::chr20:36758336..36758366,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=7052 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11778 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=54bp_to_M98479_5end | |||
|coexpression_cluster_id=C454 | |||
|description=CAGE_peak_5_at_TGM2_5end | |||
|id=chr20:36758336..36758366,- | |||
|ontology_enrichment_celltype=CL:0000192!3.52e-10!42;CL:0000514!3.52e-10!42;CL:0000359!1.85e-08!32;CL:0000222!3.72e-08!119;CL:0002139!5.79e-08!24;CL:0000183!6.10e-07!59;CL:0000680!7.72e-07!57;CL:0000056!7.72e-07!57;CL:0000355!7.72e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.57e-15;19!CL:0002139;7.08e-08;24!CL:0000359;7.76e-08;32!CL:0000071;8.75e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.59e-15,19;CL:0000115,7.78e-08,36;CL:0000359,8.91e-08,32;CL:0002139,8.98e-08,24;CL:0000222,1.06e-07,121;CL:0000192,2.36e-07,43;CL:0000514,2.36e-07,43 | |||
|ontology_enrichment_development_v019=CL:0002546;8.75e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!8.81e-22!118;UBERON:0002049!4.28e-20!79;UBERON:0007798!4.28e-20!79;UBERON:0000055!1.09e-18!69;UBERON:0004872!5.64e-18!84;UBERON:0001981!1.17e-16!60;UBERON:0007500!1.17e-16!60;UBERON:0004537!1.17e-16!60;UBERON:0006965!1.17e-16!60;UBERON:0000477!4.72e-15!286;UBERON:0001009!5.63e-15!113;UBERON:0000468!6.41e-14!659;UBERON:0004111!6.57e-14!241;UBERON:0004535!1.44e-13!110;UBERON:0000490!3.11e-13!138;UBERON:0005256!4.08e-13!143;UBERON:0001637!5.66e-13!42;UBERON:0003509!5.66e-13!42;UBERON:0004572!5.66e-13!42;UBERON:0000119!3.09e-12!312;UBERON:0000483!4.43e-12!309;UBERON:0000467!5.20e-12!625;UBERON:0002100!5.47e-12!216;UBERON:0000480!7.43e-12!626;UBERON:0000025!3.21e-11!194;UBERON:0005631!1.02e-10!14;UBERON:0000158!1.02e-10!14;UBERON:0000926!1.96e-10!448;UBERON:0004120!1.96e-10!448;UBERON:0006603!1.96e-10!448;UBERON:0003104!6.65e-10!238;UBERON:0009142!6.65e-10!238;UBERON:0004573!7.41e-10!33;UBERON:0004571!7.41e-10!33;UBERON:0000481!8.72e-10!347;UBERON:0004923!1.71e-09!57;UBERON:0000478!2.84e-09!24;UBERON:0002050!1.38e-08!605;UBERON:0005423!1.38e-08!605;UBERON:0000923!2.79e-08!604;UBERON:0005291!2.79e-08!604;UBERON:0006598!2.79e-08!604;UBERON:0002532!2.79e-08!604;UBERON:0000922!4.52e-08!612;UBERON:0000475!5.36e-07!365;UBERON:0003124!5.71e-07!7;UBERON:0000914!6.12e-07!83;UBERON:0002329!6.12e-07!83;UBERON:0003077!6.12e-07!83;UBERON:0003059!6.12e-07!83;UBERON:0007282!6.12e-07!83;UBERON:0009618!6.12e-07!83;UBERON:0007285!6.12e-07!83;UBERON:0004290!6.53e-07!70;UBERON:0003103!7.31e-07!69;UBERON:0000064!9.24e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.81e-15;24!UBERON:0001637;2.95e-11;42!UBERON:0003509;2.95e-11;42!UBERON:0004572;2.95e-11;42!UBERON:0005631;2.87e-10;10!UBERON:0000158;2.87e-10;10!UBERON:0004573;6.02e-10;33!UBERON:0004571;6.02e-10;33!UBERON:0003914;1.00e-08;74!UBERON:0000055;6.51e-08;65!UBERON:0002049;6.56e-08;75!UBERON:0007798;6.56e-08;75!UBERON:0007500;8.53e-08;56!UBERON:0001981;8.53e-08;56!UBERON:0004537;8.53e-08;56!UBERON:0001987;8.57e-08;4!UBERON:0004638;8.75e-07;18!UBERON:0001986;8.75e-07;18!UBERON:0004852;8.75e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,8.04e-20,117;UBERON:0004872,5.23e-19,83;UBERON:0002049,7.01e-17,78;UBERON:0007798,7.01e-17,78;UBERON:0000055,8.31e-17,68;UBERON:0001009,2.37e-16,112;UBERON:0005631,3.39e-16,14;UBERON:0000158,3.39e-16,14;UBERON:0007500,2.50e-15,59;UBERON:0001981,2.50e-15,59;UBERON:0004537,2.50e-15,59;UBERON:0006965,2.50e-15,59;UBERON:0000478,2.52e-15,24;UBERON:0004535,3.81e-14,109;UBERON:0001637,8.08e-14,42;UBERON:0003509,8.08e-14,42;UBERON:0004572,8.08e-14,42;UBERON:0003124,1.93e-12,7;UBERON:0000490,1.22e-11,148;UBERON:0004573,1.00e-10,33;UBERON:0004571,1.00e-10,33;UBERON:0000926,2.49e-08,315;UBERON:0004120,2.49e-08,315;UBERON:0006603,2.49e-08,315;UBERON:0003081,2.58e-08,203;UBERON:0000025,2.79e-08,192;UBERON:0004111,4.53e-08,240;UBERON:0005256,7.64e-08,122;UBERON:0001987,8.06e-08,4;UBERON:0004340,8.06e-08,4;UBERON:0003104,2.92e-07,160;UBERON:0009142,2.92e-07,160;UBERON:0002100,4.46e-07,199 | |||
|phase1_expression=1.45342703416445,1.49870366723688,1.40954404095971,4.00293193412522,1.78784437770915,2.61701557230111,5.06599756336621,0,0,0.491467873003018,1.39560233594486,3.71350332621293,10.2869121509097,0,0,2.01697543935533,3.01347264011988,1.46062018077475,0.975865597581014,0,1.22400414746552,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0.50133791063589,0,0,0,0.661743720148475,6.43015252641436,5.35792192728069,0.261958150995425,0.364295288292542,0.741568885568859,0.324547393654683,0.174129737299267,1.99436940778298,0,0,0,0.596287222100115,0,0.694281003215189,1.13061588384802,1.25849830862972,8.80377734208216,3.76190939766259,0.775250277507987,0.71153252537342,0.66944122552934,1.20848795132744,3.04108842287405,1.46437234528902,0,6.48113558305408,1.3394959242612,0.44905874525234,0.900891843866578,0,0,2.38162267109529,0,0,0,0,1.51956613997496,0.662045904066094,0.573673241497627,1.41867352879343,1.12135520028461,0,3.20667812942308,0,0.134710672069688,0.326923806226917,0.302714855289863,0,0,0.312160076830321,0.570471821544449,0.149448680551801,0.117434498643765,0,0,0.816616685019573,0.122834317311768,0.619954687054593,0,0.741800787835671,0,4.31170885089743,0,0.125118519871964,0.831192346452549,0,1.5324389789951,1.20190447125277,0.453728732640084,0.179389635688862,0.213557388818567,0,0,0,0,0.18611685633159,0,0.292311015483596,0,0.184099797284599,0.323292113637624,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,1.56449532329816,1.28648187638577,2.76269842704961,0,0,0.118306800039844,0.168584690078102,0,0.330881918197182,0,0.237270619111097,0,0.588664395376038,0,2.21446636387394,0,0.4115740113314,0,3.80265104465493,2.94848165003288,2.36315962672562,0,0,1.20097467208968,0.439001141634502,0,0,0,0,0,8.6598805215164,0,0.821860859650752,1.29929802984966,2.77791307545966,1.71228737011138,0,0,0,0.702012795417713,0.743155811443641,0,0.671928512795438,0.708875486211932,0.0895585227028483,0,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87192013766656,0.1466765716419,0.904902010304444,0,0.845302752556,3.98907174877306,3.12022310734098,0,0,0.266422179016099,2.85955987316295,5.96883765930587,3.29296134712308,0,2.48774364119782,3.16780749173372,0,0,0.199945982364114,0,0,2.10833939483032,0,0,0,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,3.00102312635806,0,1.66376689224646,6.60187258549499,0.473107245101804,0.468565659970853,0,6.82222512167955,0,0,0.368738337083406,0.173767228936166,0,0,0,0,0,3.03127571446259,11.6504807657348,14.8171243731543,0.496215615637554,1.38115775959256,0,0.384417447767103,0.511707249066704,0.64341568457443,0,1.07946785661859,1.77561725313127,0.0821271560138091,0.519254429183621,0.232420756919918,0.120859449591622,2.6065841139427,0.0920809889358963,0.803701137152247,0.910455840033585,2.62248829918848,0.451199612907412,0.770153371044148,0,1.46139224653261,0.316654886678627,0,1.87103075804167,1.72732732881711,0,0.812839312631559,2.00675909541941,0.254876273045038,0,1.11937377361089,0,0,0,0.656029291399411,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0.322260734604821,0,0,0,0.330569830721956,0.384380134730212,0.127612712494584,0,1.39453664789186,1.5740617341532,0,0.308033580176089,0,0.869932992075073,4.07713282028624,1.14499909393593,0,0.316379424718726,0.190630193923825,0.255897791311334,0.42793898803392,0.318203247925937,0,0.899362287916574,3.29444435683266,0.942499218765491,1.01091240786658,12.6808256938407,0.421258456238981,0,2.19342140668156,4.22600587027022,1.09199929126389,1.41405431953713,0,0,10.6150236038595,21.4840933774344,0.578775534266688,0.655894752046633,0.405820753925408,5.5768229657955,3.09865162785466,0.430234056612155,0.392996164052485,0.7133421029625,0,0,0.987884678879706,0,0.349934720244983,0.0962221127255121,2.01090682660736,0,1.12972560932135,0,0,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,1.4098700508785,0,0.293016358543788,0,0,1.70481688083848,1.43246690842614,0.296964680832639,0.921482106297696,0,0.140669416410513,2.11486539543521,0,0,1.59398390600856,0.276283915531148,0,0,0,0.311039587661807,1.43789361835723,0.358042349351218,0,0.887790650732402,0,0,0.969332746095218,0,0,0,0,1.44999915086959,0,0.254253650292766,0,0,0,0,0,0.482385754501632,0,0.110579259931225,0,0,0,0,1.07730361905316,0.683652335082007,0,0,0.108647371922008,4.78501739597879,3.02272058226146,7.99552164027952,0,0,0.166211681900156,0,0.19606253431774,0,0,0,1.47698645169619,1.14262965711403,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0.728341138602278,0,0,0,0.568679216656392,0,0,1.32930774541437,0.661983911750998,0.313932918407225,0,0,0.138674673013139,0,0,0,0.873633341210151,0.859930162358083,0,0.146178634172371,0.0821154570532092,0.2909670494652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| |||
|short_description=p5@TGM2 | |||
}} |
Revision as of 11:10, 21 January 2014
Short description: | p5@TGM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_5_at_TGM2_5end |
Coexpression cluster: | C454_Placental_Amniotic_Smooth_Mesenchymal_Lens_Renal_bile |
Association with transcript: | 54bp_to_M98479_5end |
EntrezGene: | TGM2 |
HGNC: | 11778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.59e-15 | 19 |
endothelial cell | 7.78e-08 | 36 |
vascular associated smooth muscle cell | 8.91e-08 | 32 |
endothelial cell of vascular tree | 8.98e-08 | 24 |
mesodermal cell | 1.06e-07 | 121 |
smooth muscle cell | 2.36e-07 | 43 |
smooth muscle myoblast | 2.36e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 8.04e-20 | 117 |
splanchnic layer of lateral plate mesoderm | 5.23e-19 | 83 |
vasculature | 7.01e-17 | 78 |
vascular system | 7.01e-17 | 78 |
vessel | 8.31e-17 | 68 |
circulatory system | 2.37e-16 | 112 |
extraembryonic membrane | 3.39e-16 | 14 |
membranous layer | 3.39e-16 | 14 |
epithelial tube open at both ends | 2.50e-15 | 59 |
blood vessel | 2.50e-15 | 59 |
blood vasculature | 2.50e-15 | 59 |
vascular cord | 2.50e-15 | 59 |
extraembryonic structure | 2.52e-15 | 24 |
cardiovascular system | 3.81e-14 | 109 |
artery | 8.08e-14 | 42 |
arterial blood vessel | 8.08e-14 | 42 |
arterial system | 8.08e-14 | 42 |
chorion | 1.93e-12 | 7 |
unilaminar epithelium | 1.22e-11 | 148 |
systemic artery | 1.00e-10 | 33 |
systemic arterial system | 1.00e-10 | 33 |
mesoderm | 2.49e-08 | 315 |
mesoderm-derived structure | 2.49e-08 | 315 |
presumptive mesoderm | 2.49e-08 | 315 |
lateral plate mesoderm | 2.58e-08 | 203 |
tube | 2.79e-08 | 192 |
anatomical conduit | 4.53e-08 | 240 |
trunk mesenchyme | 7.64e-08 | 122 |
placenta | 8.06e-08 | 4 |
allantois | 8.06e-08 | 4 |
mesenchyme | 2.92e-07 | 160 |
entire embryonic mesenchyme | 2.92e-07 | 160 |
trunk | 4.46e-07 | 199 |