FFCP PHASE1:Hg19::chr20:31331744..31331765,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=149951 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16223 | |||
|TSSclassifier=strong | |||
|UniProt=Q86VX2 | |||
|association_with_transcript=37bp_to_ENST00000278980_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_3_at_COMMD7_5end | |||
|id=chr20:31331744..31331765,- | |||
|ontology_enrichment_celltype=CL:0000791!9.58e-08!18;CL:0000789!9.58e-08!18;CL:0002420!9.58e-08!18;CL:0002419!9.58e-08!18;CL:0000790!9.58e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0002322;3.09e-10;5!CL:0000039;9.52e-10;7!CL:0000586;9.52e-10;7!CL:0000791;1.95e-08;18!CL:0000789;1.95e-08;18!CL:0002419;1.95e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.15e-10,5;CL:0000039,9.83e-10,7;CL:0000586,9.83e-10,7;CL:0000791,1.59e-08,18;CL:0000789,1.59e-08,18;CL:0002420,1.59e-08,18;CL:0002419,1.59e-08,18;CL:0000790,1.59e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;1.95e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.52e-10!57;UBERON:0005068!5.52e-10!57;UBERON:0006241!5.52e-10!57;UBERON:0007135!5.52e-10!57;UBERON:0002616!2.57e-09!59;UBERON:0005743!3.54e-09!86;UBERON:0001017!6.15e-08!82;UBERON:0000955!7.30e-08!69;UBERON:0006238!7.30e-08!69;UBERON:0000073!7.30e-08!94;UBERON:0001016!7.30e-08!94;UBERON:0003075!8.03e-08!86;UBERON:0007284!8.03e-08!86;UBERON:0002780!1.15e-07!41;UBERON:0001890!1.15e-07!41;UBERON:0006240!1.15e-07!41;UBERON:0003080!3.44e-07!42;UBERON:0002346!3.64e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0000200;7.19e-08;6!UBERON:0004733;5.60e-07;12!UBERON:0002028;5.60e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.02e-09,53;UBERON:0002616,1.02e-09,53;UBERON:0001049,7.02e-09,56;UBERON:0005068,7.02e-09,56;UBERON:0006241,7.02e-09,56;UBERON:0007135,7.02e-09,56;UBERON:0000200,1.37e-07,6;UBERON:0001017,4.73e-07,81;UBERON:0004733,6.15e-07,12;UBERON:0002028,6.15e-07,12;UBERON:0007277,6.15e-07,12;UBERON:0003075,7.48e-07,82;UBERON:0007284,7.48e-07,82;UBERON:0000955,7.95e-07,68;UBERON:0006238,7.95e-07,68 | |||
|phase1_expression=0.54503513781167,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.218441372130172,0,0,0,0,0,0.730310090387373,0.487932798790507,0.246242116153576,0,0.313454721478088,0,0.136874425072884,0.125542639594803,0.152826811495903,0.164201178899891,0.0787107813136792,0.393364276848904,0.383829398097213,0,0,0,0.369754010166788,0.852139206383318,2.98555388223585,0,0.553995408531877,0.200544447470142,0.434021741431704,0,0.32389366601898,0,0,0,0,0,0,0,0,0.768482119587302,0,0.344745680736619,0,0,0,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0.329851300186716,0.398927315243264,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0.587237189370939,1.52909291250092,0,0.560508562981536,0,2.9506465517075,4.71612915298998,4.31763147898969,2.34061093546949,0.977766799900771,0.946895611469467,3.89653456815823,4.12218690475142,0.589211814949674,1.10766947291811,0.270803863765016,5.63601806792971,5.46249259751489,2.79544437826249,2.21080014228679,3.18783394308558,1.33457906845854,1.33770414044857,0,1.24640276967323,1.91610246800961,1.37450978193052,0.759059076058509,0.95569624297229,0.651083453856419,1.90090408889675,0.451725357233318,0.255973222308837,1.24930726552346,1.18388626022008,0,2.82249440514625,4.27904313253612,2.17236605824198,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0.0945348171640679,0,0.351339142772504,0.130979075497713,0,0.370784442784429,0,0.522389211897802,0.398873881556595,0,0,0,0.198762407366705,0.860234595106124,0,0,0.419499436209906,0,0,0.258416759169329,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0.25326102332916,1.05927344650575,0.573673241497627,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0.234321431833797,0,0,0,0.23486899728753,0,0,0.204154171254893,0.245668634623536,0,0,0,1.82032272387605,2.15585442544872,0.168336113954066,0.125118519871964,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0.772921620136887,0.18611685633159,0.168776332241266,0.0974370051611986,0,0,0,0.355009592516614,0,0,0.57978255948989,0.545492241181669,0,31.957111005954,28.2288406524764,29.0484857173796,13.164953986952,30.530822955951,12.4092302085782,0,0,0,0,0.721879481669586,0,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0,2.58275720940538,0.171567810298526,0.219500570817251,2.24803506515239,0.402115889646523,0.185176890317059,0,0,1.44331342025273,0.231860809950154,0.234817388471643,0.288732895522148,0,0,0.790204397959275,0.858486162094873,0,0,0.148631162288728,0.93733833986777,1.6798212819886,0.850650583454319,0.0895585227028483,0.290633938513962,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0.43596006883328,0,0.129271715757778,3.57656445851882,0,2.12750493267896,2.08014873822732,0,0,0.266422179016099,0,0,0,0,0.355391948742546,0,0,0,0.199945982364114,0,0,0,1.19812427745791,1.14861935834114,0,0.289562613335158,0,0,2.01753259188349,1.77327684181734,4.31255149719035,2.43851768931522,0,0,0,0.335032530668698,0.637938751653163,0,2.99161459204025,0,0,0,0.271265023699736,0.623912584592421,0.535286966391485,0.473107245101804,0.35142424497814,0.601892199455438,0,1.03473071292505,0,0,0.173767228936166,0,0,0.413536052245775,0.862856803274467,1.49418580924822,1.21251028578504,0,0.604780586659361,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.348631135379878,2.77976734060731,0.802025881213139,0.368323955743585,0.34444334449382,0.182091168006717,0.262248829918848,4.96319574198153,5.54510427151786,0.784349769176855,0,2.63879072232189,0,0,0,0,0.812839312631559,3.01013864312912,1.78413391131527,3.3243040357149,0.895499018888713,0,0,3.07740150139667,0.656029291399411,1.95227036798582,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0,0,0.170453254832202,0.0890320356467374,0.495854746082934,0,0.765676274967505,0.2023155617111,0.464845549297286,0.31481234683064,0,0.308033580176089,0.532306030317022,0,0.37064843820784,0,0.372158369359667,0,0.190630193923825,0.255897791311334,0,0,0,0.179872457583315,0,0.471249609382746,0,1.58510321173008,0,0,0,1.05650146756755,0.136499911407986,0.141405431953713,0,0,0.66343897524122,0,1.15755106853338,0.655894752046633,0,0.92947049429925,0,0.286822704408103,0.196498082026242,0,1.41904425628239,0,0,0,0,0.0962221127255121,0,0,0,2.58303223602738,0,0,0.459446800413919,1.01489521846434,0,0.569647187174163,0.238231775457789,1.23408681925858,0,0,0.79312517629427,0.106824071127473,1.92495971052672,0,0.185803175125719,0,0.0711418433484141,0.637705090915289,0,3.83010740264733,4.02179807175377,0,0.280797178113459,0,0,0,3.04725200042886,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0.121360521749513,0.66866030566487,0,0,0.593929361665277,0,0,0.422008249231538,0.333926115068718,0.16480387422676,0.422250816255987,0.597743964753209,0,0,0,0.615424027305347,0.622079175323615,0.539210106883961,0,0,0.0986434056369336,0,0,0.96933274609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| |||
|short_description=p3@COMMD7 | |||
}} |
Revision as of 10:46, 21 January 2014
Short description: | p3@COMMD7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COMMD7_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 37bp_to_ENST00000278980_5end |
EntrezGene: | COMMD7 |
HGNC: | 16223 |
UniProt: | Q86VX2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.15e-10 | 5 |
germ line cell | 9.83e-10 | 7 |
germ cell | 9.83e-10 | 7 |
mature alpha-beta T cell | 1.59e-08 | 18 |
alpha-beta T cell | 1.59e-08 | 18 |
immature T cell | 1.59e-08 | 18 |
mature T cell | 1.59e-08 | 18 |
immature alpha-beta T cell | 1.59e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.02e-09 | 53 |
regional part of brain | 1.02e-09 | 53 |
neural tube | 7.02e-09 | 56 |
neural rod | 7.02e-09 | 56 |
future spinal cord | 7.02e-09 | 56 |
neural keel | 7.02e-09 | 56 |
gyrus | 1.37e-07 | 6 |
central nervous system | 4.73e-07 | 81 |
segmental subdivision of hindbrain | 6.15e-07 | 12 |
hindbrain | 6.15e-07 | 12 |
presumptive hindbrain | 6.15e-07 | 12 |
neural plate | 7.48e-07 | 82 |
presumptive neural plate | 7.48e-07 | 82 |
brain | 7.95e-07 | 68 |
future brain | 7.95e-07 | 68 |