FFCP PHASE1:Hg19::chr2:135805029..135805039,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80122 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26249 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000468155,uc010fne.1_5end | |||
|coexpression_cluster_id=C111 | |||
|description=CAGE_peak_2_at_YSK4_5end | |||
|id=chr2:135805029..135805039,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.90e-12;2!UBERON:0008947;1.54e-07;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.50e-29!57;UBERON:0005068!2.50e-29!57;UBERON:0006241!2.50e-29!57;UBERON:0007135!2.50e-29!57;UBERON:0007023!1.17e-28!115;UBERON:0002616!2.34e-25!59;UBERON:0000955!5.34e-23!69;UBERON:0006238!5.34e-23!69;UBERON:0001017!9.88e-21!82;UBERON:0002298!1.08e-20!8;UBERON:0005743!1.49e-19!86;UBERON:0003075!6.79e-18!86;UBERON:0007284!6.79e-18!86;UBERON:0002780!1.22e-17!41;UBERON:0001890!1.22e-17!41;UBERON:0006240!1.22e-17!41;UBERON:0000073!2.92e-17!94;UBERON:0001016!2.92e-17!94;UBERON:0003080!3.71e-17!42;UBERON:0002346!6.83e-17!90;UBERON:0000153!1.45e-15!129;UBERON:0007811!1.45e-15!129;UBERON:0001896!3.74e-15!3;UBERON:0005290!3.74e-15!3;UBERON:0010096!3.74e-15!3;UBERON:0000988!2.07e-14!3;UBERON:0003076!2.25e-14!15;UBERON:0003057!2.25e-14!15;UBERON:0004733!1.39e-13!12;UBERON:0002028!1.39e-13!12;UBERON:0007277!1.39e-13!12;UBERON:0000033!1.46e-13!123;UBERON:0002308!1.69e-12!9;UBERON:0000125!1.69e-12!9;UBERON:0004732!1.73e-12!13;UBERON:0003056!5.67e-11!61;UBERON:0002020!7.06e-11!34;UBERON:0003528!7.06e-11!34;UBERON:0001893!9.00e-11!34;UBERON:0000025!9.03e-11!194;UBERON:0003127!9.11e-11!2;UBERON:0000369!1.11e-10!4;UBERON:0002435!1.11e-10!4;UBERON:0000204!1.11e-10!4;UBERON:0010082!1.11e-10!4;UBERON:0001894!1.50e-10!7;UBERON:0006222!1.50e-10!7;UBERON:0002148!2.32e-10!2;UBERON:0009662!2.32e-10!2;UBERON:0000341!3.52e-10!2;UBERON:0001954!4.42e-10!2;UBERON:0003022!4.42e-10!2;UBERON:0002421!4.42e-10!2;UBERON:0002600!4.42e-10!2;UBERON:0001869!3.16e-09!32;UBERON:0002791!4.57e-09!33;UBERON:0000349!1.09e-08!5;UBERON:0004121!1.40e-07!169;UBERON:0004111!1.60e-07!241;UBERON:0000924!2.67e-07!173;UBERON:0006601!2.67e-07!173;UBERON:0006331!3.59e-07!3;UBERON:0005383!6.36e-07!3;UBERON:0005382!6.36e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;1.84e-30;3!UBERON:0005290;1.84e-30;3!UBERON:0002336;4.10e-23;1!UBERON:0001301;4.10e-23;1!UBERON:0011215;4.10e-23;1!UBERON:0001018;4.10e-23;1!UBERON:0002473;4.10e-23;1!UBERON:0005340;4.10e-23;1!UBERON:0003544;4.10e-23;1!UBERON:0005970;4.10e-23;1!UBERON:0002316;4.10e-23;1!UBERON:0001020;4.10e-23;1!UBERON:0002437;4.10e-23;1!UBERON:0002298;8.71e-16;6!UBERON:0003127;1.48e-12;2!UBERON:0000341;2.90e-12;2!UBERON:0005162;2.90e-12;2!UBERON:0000122;2.90e-12;2!UBERON:0006947;1.30e-08;3!UBERON:0004054;1.30e-08;3!UBERON:0004733;2.24e-08;12!UBERON:0002028;2.24e-08;12!UBERON:0004732;8.45e-08;13!UBERON:0005904;9.10e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,1.98e-30,3;UBERON:0005290,1.98e-30,3;UBERON:0010096,1.98e-30,3;UBERON:0001301,2.62e-23,1;UBERON:0002336,6.40e-23,1;UBERON:0011215,6.40e-23,1;UBERON:0001018,6.40e-23,1;UBERON:0002473,6.40e-23,1;UBERON:0005340,6.40e-23,1;UBERON:0003544,6.40e-23,1;UBERON:0005970,6.40e-23,1;UBERON:0002316,6.40e-23,1;UBERON:0001020,6.40e-23,1;UBERON:0002437,6.40e-23,1;UBERON:0002298,9.04e-16,6;UBERON:0003127,1.48e-12,2;UBERON:0000341,3.24e-12,2;UBERON:0005162,3.62e-12,2;UBERON:0000122,3.62e-12,2;UBERON:0007023,2.41e-09,114;UBERON:0006947,1.12e-08,3;UBERON:0004054,1.12e-08,3;UBERON:0004733,2.29e-08,12;UBERON:0002028,2.29e-08,12;UBERON:0007277,2.29e-08,12;UBERON:0004732,8.59e-08,13;UBERON:0003076,7.20e-07,15;UBERON:0003057,7.20e-07,15;UBERON:0005904,8.14e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.844175070377856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,1.01101699471016,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904980694530854,0.79339561045614,0,0,1.28144895081234,4.08731193259131,0.828478110694391,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,4.0138643698305,3.21694249456872,0.807253238237985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,1.20336525358812,0,0,0,0,0,0.0675375846183947,0,0,0,0.546974809018219,0,0,0,0,0,0.672567444437648,0,0.227662191351298,0,0,0,0.271878931907327,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.620597975171371,0.213233981900981,1.1903221573187,0,0,0,0,0,0,0,0,6.74188730691158,0.99798106963804,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p2@YSK4 | |||
}} |
Revision as of 05:32, 21 January 2014
Short description: | p2@YSK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_YSK4_5end |
Coexpression cluster: | C111_medulla_lung_trachea_testis_caudate_epididymis_throat |
Association with transcript: | 0bp_to_ENST00000468155, uc010fne.1_5end |
EntrezGene: | YSK4 |
HGNC: | 26249 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 1.98e-30 | 3 |
myelencephalon | 1.98e-30 | 3 |
future myelencephalon | 1.98e-30 | 3 |
epididymis | 2.62e-23 | 1 |
corpus callosum | 6.40e-23 | 1 |
central nervous system cell part cluster | 6.40e-23 | 1 |
axon tract | 6.40e-23 | 1 |
intercerebral commissure | 6.40e-23 | 1 |
dorsal telencephalic commissure | 6.40e-23 | 1 |
brain white matter | 6.40e-23 | 1 |
brain commissure | 6.40e-23 | 1 |
white matter | 6.40e-23 | 1 |
nervous system commissure | 6.40e-23 | 1 |
cerebral hemisphere white matter | 6.40e-23 | 1 |
brainstem | 9.04e-16 | 6 |
open tracheal system trachea | 1.48e-12 | 2 |
throat | 3.24e-12 | 2 |
multi cell component structure | 3.62e-12 | 2 |
neuron projection bundle | 3.62e-12 | 2 |
adult organism | 2.41e-09 | 114 |
male genital duct | 1.12e-08 | 3 |
internal male genitalia | 1.12e-08 | 3 |
segmental subdivision of hindbrain | 2.29e-08 | 12 |
hindbrain | 2.29e-08 | 12 |
presumptive hindbrain | 2.29e-08 | 12 |
segmental subdivision of nervous system | 8.59e-08 | 13 |
posterior neural tube | 7.20e-07 | 15 |
chordal neural plate | 7.20e-07 | 15 |
duct of male reproductive system | 8.14e-07 | 4 |