FFCP PHASE1:Hg19::chr2:74730430..74730451,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=85474 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15525 | |||
|TSSclassifier=strong | |||
|UniProt=Q6XYB7 | |||
|association_with_transcript=0bp_to_NM_001009812,uc002slw.2_5end | |||
|description=CAGE_peak_1_at_LBX2_5end | |||
|id=chr2:74730430..74730451,- | |||
|ontology_enrichment_celltype=CL:0000548!3.02e-25!679;CL:0000004!3.02e-25!679;CL:0000255!3.02e-25!679;CL:0000012!1.49e-24!682;CL:0000144!1.56e-23!625;CL:0002371!6.71e-23!591;CL:0000063!5.19e-18!578;CL:0000003!3.46e-14!722;CL:0002057!1.61e-13!42;CL:0000222!4.66e-13!119;CL:0000055!2.24e-12!180;CL:0000057!4.55e-12!75;CL:0000860!6.91e-12!45;CL:0000839!6.22e-11!70;CL:0002194!1.41e-10!63;CL:0000576!1.41e-10!63;CL:0000040!1.41e-10!63;CL:0000559!1.41e-10!63;CL:0000213!2.31e-10!57;CL:0000215!2.31e-10!57;CL:0000048!3.08e-10!430;CL:0000557!3.84e-10!71;CL:0000220!6.80e-10!246;CL:0000723!1.76e-09!436;CL:0000115!1.79e-09!35;CL:0002009!1.82e-09!65;CL:0002321!2.32e-09!248;CL:0000766!5.88e-09!76;CL:0000034!3.57e-08!444;CL:0002139!9.49e-08!24;CL:0000071!3.31e-07!18;CL:0002546!3.31e-07!18;CL:0002078!4.29e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.14e-17;33!CL:0002057;1.14e-17;33!CL:0000473;5.96e-14;39!CL:0000234;5.96e-14;39!CL:0000115;4.26e-10;36!CL:0000071;7.36e-09;18!CL:0002139;1.15e-08;24!CL:0000576;1.37e-08;48!CL:0002334;1.66e-07;12!CL:1000413;3.70e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.35e-14,42;CL:0002057,2.35e-14,42;CL:0000473,5.43e-14,48;CL:0000234,5.43e-14,48;CL:0000057,6.91e-13,76;CL:0000222,2.46e-12,121;CL:0000839,3.03e-12,66;CL:0002194,4.89e-12,59;CL:0000576,4.89e-12,59;CL:0000040,4.89e-12,59;CL:0000559,4.89e-12,59;CL:0000557,7.97e-12,67;CL:0000213,1.20e-11,58;CL:0000215,1.20e-11,58;CL:0000115,2.29e-11,36;CL:0002009,3.66e-11,61;CL:0000048,2.12e-10,427;CL:0000766,6.15e-10,72;CL:0000723,1.36e-09,433;CL:0000071,2.34e-09,18;CL:0002546,2.34e-09,18;CL:0002139,3.48e-09,24;CL:0000034,1.41e-08,441;CL:0002334,9.34e-08,12;CL:1000413,4.18e-07,9;CL:0002078,4.54e-07,45;CL:0000134,5.54e-07,354;CL:0002321,5.95e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002057;1.82e-11;42!CL:0002546;7.36e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!5.97e-14!448;UBERON:0004120!5.97e-14!448;UBERON:0006603!5.97e-14!448;UBERON:0002204!1.47e-12!167;UBERON:0003081!2.33e-12!216;UBERON:0002371!2.16e-10!80;UBERON:0004765!2.08e-08!101;UBERON:0001434!2.08e-08!101;UBERON:0002405!3.70e-08!115;UBERON:0002049!4.48e-08!79;UBERON:0007798!4.48e-08!79;UBERON:0001474!5.17e-08!86;UBERON:0004872!9.70e-08!84;UBERON:0003914!1.77e-07!118;UBERON:0004535!2.80e-07!110;UBERON:0000055!2.83e-07!69;UBERON:0001986!3.31e-07!18;UBERON:0004638!3.31e-07!18;UBERON:0004852!3.31e-07!18;UBERON:0002384!5.35e-07!375;UBERON:0001013!9.58e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.36e-09;18!UBERON:0001986;7.36e-09;18!UBERON:0004852;7.36e-09;18!UBERON:0001013;1.68e-07;14!UBERON:0003915;3.70e-07;9!UBERON:0004700;3.70e-07;9!UBERON:0001917;3.70e-07;9!UBERON:0000487;5.99e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,7.99e-14,203;UBERON:0000926,2.38e-13,315;UBERON:0004120,2.38e-13,315;UBERON:0006603,2.38e-13,315;UBERON:0002204,4.30e-13,167;UBERON:0002371,6.38e-13,76;UBERON:0002405,3.55e-11,93;UBERON:0001474,1.05e-10,82;UBERON:0001434,1.64e-09,100;UBERON:0004638,2.34e-09,18;UBERON:0001986,2.34e-09,18;UBERON:0004852,2.34e-09,18;UBERON:0004765,2.78e-09,90;UBERON:0002193,2.09e-08,108;UBERON:0002390,1.35e-07,98;UBERON:0003061,1.35e-07,98;UBERON:0001013,1.52e-07,14;UBERON:0000487,1.60e-07,22;UBERON:0004872,1.62e-07,83;UBERON:0002049,1.75e-07,78;UBERON:0007798,1.75e-07,78;UBERON:0003915,4.18e-07,9;UBERON:0004700,4.18e-07,9;UBERON:0001917,4.18e-07,9;UBERON:0004535,4.42e-07,109;UBERON:0002384,5.04e-07,371;UBERON:0000055,5.96e-07,68 | |||
|phase1_expression=4.54195948176392,2.35510576280081,2.53717927372748,0,3.12872766099101,2.61701557230111,5.06599756336621,2.52687949370732,3.13422753839806,0.982935746006035,0,0.873765488520689,0.527533956456907,0.990130823680373,0.662794751455832,1.34465029290355,0,0,0,0.738726348460727,2.04000691244253,0.313454721478088,0,0.958120975510189,0.376627918784408,0.382067028739756,0.246301768349837,0.472264687882075,0.786728553697808,0.383829398097213,0.928896739896456,1.83884244895785,1.50602959389125,1.84877005083394,0,0,0,1.10799081706375,1.20326668482085,0.434021741431704,2.91090116511902,0.971680998056939,0.77272670290256,8.72389432677388,11.3362783106643,8.73302620276138,10.4593066607558,6.57868620834921,10.8397229813286,3.74000110018796,6.91633907628572,3.07426898855161,4.13694816883942,3.87290810150296,6.77132432971709,12.6122367493545,12.5536829026609,7.41587498668779,5.20342617030534,6.09765151444578,0.639337125799041,5.27762080298746,8.57693727773017,8.52449501065388,4.64334781805734,5.10646702222026,5.60540024096017,8.29120595347253,4.17186334736161,4.56096573880745,3.02699751316684,2.20966581592539,1.89877432464531,0.845021145247767,1.4882300997553,0.209658645508376,0.898629049171961,0.450530678524519,0.32145117339416,0.570025487482497,0.59675003159727,0,0,0,0.889509253863555,0.426730222566507,0,0,0,0,0,0.587237189370939,0,0,0,0.526768169550154,0,0,0,0.501559486172034,0,0,0,0.222820913770347,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.301150238155546,0.127986611154418,0,0.473554504088034,0,0,0,0.144824403882799,2.43806866313962,3.35350429851818,0.383587685530591,1.0843174571537,0.50133791063589,2.02785126545153,3.1811437882044,1.94653948121054,0.283604451492204,0.665188192387692,0.351339142772504,0.327447688744282,1.45718115317017,1.48313777113772,0.649094787309367,1.56716763569341,1.72845348674525,0,0,0,2.78267370313387,5.16140757063675,1.38856200643038,7.34900324501212,7.1314904155684,4.67700671298115,5.01587919688345,2.32575083252396,1.77883131343355,0.66944122552934,1.61131726843659,0,1.95249646038536,2.57364156242108,3.24056779152704,1.7859945656816,1.34717623575702,1.91439516821648,6.13266549863533,2.84779697870439,5.31285057398181,0,0,0.872188104285069,1.49091585508596,1.01304409331664,1.05927344650575,0.860509862246441,2.12801029319014,0,1.06748995729705,1.72667283892012,3.11211035399766,2.55950276932407,2.7788523529288,0.605429710579726,2.30470369792,1.87457145467037,1.87296046098192,0.570471821544449,1.04614076386261,0.587172493218824,1.61872944368132,0.842704840213491,0.408308342509787,2.08818339430006,1.13658359293342,1.18800285728205,2.71993622206413,2.73048408581408,7.90479955997862,1.0100166837244,1.50142223846357,1.93944880838928,1.75591048352335,1.83892677479412,1.95309476578576,0.794025282120147,1.97328599257748,1.70845911054854,0.423863802319124,1.80054657650641,2.67936576019941,0.515281080091258,1.11670113798954,1.35021065793013,1.16924406193438,1.00973509697646,2.02509777013059,0.646584227275248,0,1.10827308050404,1.69560592310488,1.54608682530637,2.18196896472668,1.72082757233402,0,0,0,0.518305275076852,0,0,0,1.92972281457866,4.14404764057442,1.85747171212792,2.88751792667834,0.236613600079688,0.674338760312407,0,0.220587945464788,0.217879444092406,0,0.134831308160164,0.588664395376038,0.769494313892781,5.90524363699719,4.20725321410337,0.4115740113314,7.3504355692771,0,0,0.590789906681404,0,0.491953754172454,0.343135620597051,0.98775256867763,0,0.402115889646523,0.185176890317059,3.25808305310325,4.15973914111831,0,0.695582429850461,0,1.44366447761074,2.77791307545966,0.570762456703795,3.95102198979638,1.71697232418975,3.20082107913617,0.702012795417713,1.93220510975347,0.93733833986777,1.17587489739202,0.567100388969546,0,0,0,0.985326475791887,3.96217953059517,2.48793738648926,2.45003920808834,1.38866676769018,2.34942208881025,4.58386110669933,2.34434894420094,10.2643467613623,1.85089486865982,3.30377363628309,1.42913216315289,1.12131084345361,0.87192013766656,0.80672114403045,0.517086863031111,14.3062578340753,4.22651376278,0.531876233169741,1.04007436911366,1.54324424557285,0,3.99633268524149,0.57191197463259,0,1.64648067356154,0.977208552881205,0,0,1.80863626235752,0.871533458600294,1.3996218765488,0,4.01805673145701,0,0.239624855491583,0,0,1.73737568001095,0.61642896765115,1.61154866915906,0,0.197030760201927,0.862510299438069,0.77005821767849,0,0,0,0.502548796003046,0,0,0,0,0.24538298343828,2.00068208423871,0.271265023699736,0.415941723061614,0.356857977594324,0.315404830067869,0,0.601892199455438,4.5481500811197,0,0.664225598535437,2.94990669666725,2.17209036170207,1.37060810223918,0.343143423810856,0,0.431428401637234,0.533637789017222,3.03127571446259,3.32870879020994,1.81434175997808,1.98486246255021,2.30192959932094,3.92924132206303,3.71603532841533,3.58195074346692,3.53878626515936,1.48418066444991,2.31314540703983,2.30830242907065,2.87445046048332,4.15403543346897,3.37010097533882,1.20859449591622,0.20050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| |||
|short_description=p1@LBX2 | |||
}} |
Revision as of 04:01, 21 January 2014
Short description: | p1@LBX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LBX2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001009812, uc002slw.2_5end |
EntrezGene: | LBX2 |
HGNC: | 15525 |
UniProt: | Q6XYB7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.35e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.35e-14 | 42 |
defensive cell | 5.43e-14 | 48 |
phagocyte | 5.43e-14 | 48 |
fibroblast | 6.91e-13 | 76 |
mesodermal cell | 2.46e-12 | 121 |
myeloid lineage restricted progenitor cell | 3.03e-12 | 66 |
monopoietic cell | 4.89e-12 | 59 |
monocyte | 4.89e-12 | 59 |
monoblast | 4.89e-12 | 59 |
promonocyte | 4.89e-12 | 59 |
granulocyte monocyte progenitor cell | 7.97e-12 | 67 |
lining cell | 1.20e-11 | 58 |
barrier cell | 1.20e-11 | 58 |
endothelial cell | 2.29e-11 | 36 |
macrophage dendritic cell progenitor | 3.66e-11 | 61 |
multi fate stem cell | 2.12e-10 | 427 |
myeloid leukocyte | 6.15e-10 | 72 |
somatic stem cell | 1.36e-09 | 433 |
blood vessel endothelial cell | 2.34e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.34e-09 | 18 |
endothelial cell of vascular tree | 3.48e-09 | 24 |
stem cell | 1.41e-08 | 441 |
preadipocyte | 9.34e-08 | 12 |
endothelial cell of artery | 4.18e-07 | 9 |
meso-epithelial cell | 4.54e-07 | 45 |
mesenchymal cell | 5.54e-07 | 354 |
embryonic cell | 5.95e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 7.99e-14 | 203 |
mesoderm | 2.38e-13 | 315 |
mesoderm-derived structure | 2.38e-13 | 315 |
presumptive mesoderm | 2.38e-13 | 315 |
musculoskeletal system | 4.30e-13 | 167 |
bone marrow | 6.38e-13 | 76 |
immune system | 3.55e-11 | 93 |
bone element | 1.05e-10 | 82 |
skeletal system | 1.64e-09 | 100 |
blood vessel endothelium | 2.34e-09 | 18 |
endothelium | 2.34e-09 | 18 |
cardiovascular system endothelium | 2.34e-09 | 18 |
skeletal element | 2.78e-09 | 90 |
hemolymphoid system | 2.09e-08 | 108 |
hematopoietic system | 1.35e-07 | 98 |
blood island | 1.35e-07 | 98 |
adipose tissue | 1.52e-07 | 14 |
simple squamous epithelium | 1.60e-07 | 22 |
splanchnic layer of lateral plate mesoderm | 1.62e-07 | 83 |
vasculature | 1.75e-07 | 78 |
vascular system | 1.75e-07 | 78 |
endothelial tube | 4.18e-07 | 9 |
arterial system endothelium | 4.18e-07 | 9 |
endothelium of artery | 4.18e-07 | 9 |
cardiovascular system | 4.42e-07 | 109 |
connective tissue | 5.04e-07 | 371 |
vessel | 5.96e-07 | 68 |