FFCP PHASE1:Hg19::chr17:39680672..39680701,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3880 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6436 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=197bp_to_ENST00000471565_5end | |||
|coexpression_cluster_id=C2407 | |||
|description=CAGE_peak_4_at_KRT19_5end | |||
|id=chr17:39680672..39680701,- | |||
|ontology_enrichment_celltype=CL:0000066!8.50e-33!254;CL:0002076!2.14e-19!43;CL:0000223!4.78e-16!59;CL:0002368!1.77e-14!13;CL:0002202!2.61e-10!9;CL:0002632!2.61e-10!9;CL:0000082!4.38e-08!19;CL:0002321!1.32e-07!248;CL:0000220!1.80e-07!246;CL:1000497!2.39e-07!18;CL:0002518!2.39e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002368;6.91e-20;13!CL:0002202;2.49e-13;9!CL:0002632;2.49e-13;9!CL:0002076;8.69e-13;42!CL:0002328;1.87e-11;3!CL:0000349;1.46e-10;19!CL:0000077;1.64e-09;19!CL:0002537;8.07e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,6.39e-20,13;CL:0002076,1.30e-18,42;CL:0000066,4.19e-18,253;CL:0002202,3.08e-13,9;CL:0002632,3.08e-13,9;CL:0000223,2.53e-12,58;CL:0002328,1.95e-11,3;CL:0000349,1.52e-10,19;CL:0000077,1.67e-09,19;CL:0000076,8.76e-07,63;CL:0002537,9.29e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;3.08e-07;58 | |||
|ontology_enrichment_disease=DOID:305!2.53e-17!106;DOID:0050687!2.51e-13!143;DOID:299!1.03e-11!25;DOID:162!1.83e-08!235;DOID:14566!7.21e-08!239;DOID:1749!8.03e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.14e-08;4!DOID:1612;1.14e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,9.80e-09,4;DOID:1612,9.80e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.34e-18!169;UBERON:0000925!1.34e-18!169;UBERON:0006595!1.34e-18!169;UBERON:0000464!1.24e-13!104;UBERON:0001007!1.60e-12!155;UBERON:0001555!1.60e-12!155;UBERON:0007026!1.60e-12!155;UBERON:0000466!1.78e-12!126;UBERON:0005177!2.46e-11!107;UBERON:0004921!5.46e-11!129;UBERON:0004185!5.46e-11!129;UBERON:0000077!7.04e-11!130;UBERON:0005178!9.49e-11!34;UBERON:0002224!9.49e-11!34;UBERON:0005631!1.24e-10!14;UBERON:0000158!1.24e-10!14;UBERON:0006554!1.96e-10!44;UBERON:0005181!3.10e-10!35;UBERON:0001008!5.13e-10!45;UBERON:0007196!5.63e-10!14;UBERON:0001558!5.63e-10!14;UBERON:0005911!1.91e-09!82;UBERON:0009569!2.52e-09!113;UBERON:0001004!3.94e-09!72;UBERON:0000058!1.84e-08!26;UBERON:0003064!2.08e-08!37;UBERON:0004802!4.38e-08!19;UBERON:0000115!4.38e-08!19;UBERON:0000065!4.49e-08!53;UBERON:0003124!5.22e-08!7;UBERON:0000915!5.85e-08!52;UBERON:0005153!1.55e-07!37;UBERON:0002048!1.71e-07!22;UBERON:0000117!1.71e-07!22;UBERON:0000171!1.71e-07!22;UBERON:0000170!1.71e-07!22;UBERON:0005597!1.71e-07!22;UBERON:0000118!1.71e-07!22;UBERON:0004876!5.00e-07!20;UBERON:0000080!5.71e-07!18;UBERON:0002120!5.71e-07!18;UBERON:0004875!5.71e-07!18;UBERON:0005721!5.71e-07!18;UBERON:0005754!5.71e-07!18;UBERON:0007297!5.71e-07!18;UBERON:0008947!5.78e-07!38;UBERON:0003258!5.78e-07!38;UBERON:0004807!8.34e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.39e-12;10!UBERON:0000158;4.39e-12;10!UBERON:0004815;1.87e-11;3!UBERON:0002031;1.87e-11;3!UBERON:0000305;4.03e-08;7!UBERON:0000478;4.62e-08;24!UBERON:0007196;1.06e-07;15!UBERON:0001558;1.06e-07;15!UBERON:0002185;5.21e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.79e-15,14;UBERON:0000158,7.79e-15,14;UBERON:0004815,1.95e-11,3;UBERON:0002031,1.95e-11,3;UBERON:0003124,2.25e-08,7;UBERON:0000305,4.40e-08,7;UBERON:0000478,4.76e-08,24;UBERON:0007196,1.19e-07,15;UBERON:0001558,1.19e-07,15;UBERON:0004871,4.55e-07,8;UBERON:0009569,4.82e-07,112;UBERON:0002185,5.33e-07,5;UBERON:0000915,8.32e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,9.76921635161399,0.655324116390517,2.63766978228454,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.309632246632152,7.35536979583142,3.31326510656075,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0.364295288292542,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0.194874010322397,0,0,0.161646056818812,0,0.10075209822764,0,0.773043412653187,0.545492241181669,0.286804595389004,0,0.265059536642971,0,0.207322110030741,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.245976877086227,0,0,0,0,1.11106134190236,0,0,0,0,0,0,0,0,6.3216351836742,3.43394464837949,0,0,0,0.93733833986777,0.335964256397719,0.992425680696705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0,0,1.99945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0.535286966391485,0,0,0,0,1.03473071292505,0,0.184369168541703,0.260650843404249,0,0,0,0,0,0.909382714338778,3.32870879020994,3.62868351995616,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0.116210378459959,0.120859449591622,3.60911646545913,0.736647911487171,0,0,0.262248829918848,1.80479845162965,0.462092022626489,1.56869953835371,0,0.105551628892876,0,0,0.215915916102139,0,0.812839312631559,3.01013864312912,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0,0.984043937099117,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.991709492165869,1.72971060628596,5.48734663726712,2.8324178639554,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.353437207037059,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.0982490410131212,0,0.709522128141196,0,0.329294892959902,0,0,0.48111056362756,2.68120910214315,2.17781969722645,0.376575203107117,1.72202149068492,5.05414427002877,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,0.568272293612826,5.96861211844225,1.18785872333055,4.60741053148848,0,0,0,0,0.211125408127993,0.19924798825107,0.276283915531148,0,0,0,0,0.629078458031288,0.716084698702437,0,0.690503839458535,0,0,0,0,0,2.86470537193757,0.437299999980979,0,0.910347586283997,0.762760950878299,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0.83654246567162,0.0769502585037971,0,0,0.0897576444097721,1.4124158349861,2.55200927785536,0.274792780205587,5.33034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0.424059214301822,0,0,0.353830258013357,1.83309043480088,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,1.56203764501618,0,0.69647365264322,0.17472666824203,0,0.0967563312890851,0.0730893170861856,0,0.387956065953678,0,0.225980740780532,0,0,0,3.51992488922645,0.480952921509202,1.28071796843612,2.99714414373195,0.144090417154106,0,0,0,0,1.88555227693436,0.543616824294456,1.46443984837266,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0.321506296930038,0,0.415440338029185,0,0,0,0,0.0788057072991982,0,0.105600336519406,1.97216073266129,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,1.49976489554528,0,0,1.6468607378872,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0.450772826991655,3.42724690951916,0,0,0.751873899297419,0,0.398095888698616,0,0,0.336749488765919,0,0,1.50109113962448,0,0.226705925512272,2.08370226891451,0,0.358177682162975,1.85280868296583,1.31570429747224,1.41351316756705,1.15748422962549,2.02730928783687,0.256241518587947,0,0.303859956177382,0,0,0,0,0,0.245772908753719,1.69049698686902,0,0,0,0,0,0.419638523158333,0,0,2.372145850727,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,1.65085738669511,0.115525666150338,0,0,0,0.0752103283492573,0,0,0.523813388962845,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0.496211178389294,0,1.02209942111676,0,0,0,0,0.354809480650555,0,0,0,0,0,0.222462803784138,0.078493092850514,0,1.12108865325516,0,0.431855182437243,1.43325506366115,0.0714765441766563,0,0.116241425368125,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,1.14553434272025,0,0.955538938977433,0.559277158988962,0.098150233615243,0.731507549893617,0,0,0,0,0,0,0,0.22589216407792,0,0.301925687133347,0.694567422971502,0,0.470317296361523,0,0,0,0,0,0,0,0,0,2.32120120187355,1.05868461514708,0.481448200135009,0.730336388246517,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0.432626562123789,0,0,0.760191006068622,0,0,0.0918948995348449,0,0,0,0,0,0.639701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| |||
|short_description=p4@KRT19 | |||
}} |
Revision as of 15:17, 20 January 2014
Short description: | p4@KRT19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KRT19_5end |
Coexpression cluster: | C2407_Alveolar_Tracheal_Small_Bronchial_MCF7_Amniotic_Renal |
Association with transcript: | 197bp_to_ENST00000471565_5end |
EntrezGene: | KRT19 |
HGNC: | 6436 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 6.39e-20 | 13 |
endo-epithelial cell | 1.30e-18 | 42 |
epithelial cell | 4.19e-18 | 253 |
epithelial cell of tracheobronchial tree | 3.08e-13 | 9 |
epithelial cell of lower respiratory tract | 3.08e-13 | 9 |
endodermal cell | 2.53e-12 | 58 |
bronchial epithelial cell | 1.95e-11 | 3 |
extraembryonic cell | 1.52e-10 | 19 |
mesothelial cell | 1.67e-09 | 19 |
squamous epithelial cell | 8.76e-07 | 63 |
amnion mesenchymal stem cell | 9.29e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.79e-15 | 14 |
membranous layer | 7.79e-15 | 14 |
lower respiratory tract epithelium | 1.95e-11 | 3 |
epithelium of bronchus | 1.95e-11 | 3 |
chorion | 2.25e-08 | 7 |
amnion | 4.40e-08 | 7 |
extraembryonic structure | 4.76e-08 | 24 |
tracheobronchial tree | 1.19e-07 | 15 |
lower respiratory tract | 1.19e-07 | 15 |
somatic layer of lateral plate mesoderm | 4.55e-07 | 8 |
subdivision of trunk | 4.82e-07 | 112 |
bronchus | 5.33e-07 | 5 |
thoracic segment of trunk | 8.32e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 9.80e-09 | 4 |
breast cancer | 9.80e-09 | 4 |