FFCP PHASE1:Hg19::chr14:61448920..61448942,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=145389 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19863 | |||
|TSSclassifier=strong | |||
|UniProt=G3V3H5 | |||
|association_with_transcript=-140bp_to_ENST00000526105_5end | |||
|coexpression_cluster_id=C462 | |||
|description=CAGE_peak_4_at_SLC38A6_5end | |||
|id=chr14:61448920..61448942,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.28e-19!63;CL:0000576!1.28e-19!63;CL:0000040!1.28e-19!63;CL:0000559!1.28e-19!63;CL:0002009!3.08e-18!65;CL:0000839!5.62e-17!70;CL:0000557!1.18e-14!71;CL:0000860!1.25e-14!45;CL:0002057!3.74e-14!42;CL:0000766!1.21e-12!76;CL:0000763!1.60e-08!112;CL:0000049!1.60e-08!112;CL:0000219!2.09e-08!390;CL:0002320!2.66e-08!365;CL:0000048!1.06e-07!430;CL:0000034!1.12e-07!444;CL:0000723!3.93e-07!436;CL:0000134!4.90e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.81e-42;39!CL:0000234;1.81e-42;39!CL:0000860;1.57e-40;33!CL:0002057;1.57e-40;33!CL:0000576;8.16e-23;48!CL:0000766;3.84e-16;69!CL:0000235;2.14e-14;6!CL:0000763;1.25e-09;100!CL:0002619;5.24e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,2.58e-48,59;CL:0000576,2.58e-48,59;CL:0000040,2.58e-48,59;CL:0000559,2.58e-48,59;CL:0002009,2.46e-46,61;CL:0000473,1.92e-43,48;CL:0000234,1.92e-43,48;CL:0000839,6.56e-42,66;CL:0000557,4.20e-41,67;CL:0000766,2.09e-37,72;CL:0000860,3.34e-32,42;CL:0002057,3.34e-32,42;CL:0000763,3.53e-26,108;CL:0000049,3.53e-26,108;CL:0002087,5.73e-19,115;CL:0002031,1.07e-17,120;CL:0000235,2.17e-14,6;CL:0000738,2.73e-14,136;CL:0002032,1.84e-13,161;CL:0000837,1.84e-13,161;CL:0002320,5.27e-13,361;CL:0000037,2.08e-12,168;CL:0000219,1.06e-11,386;CL:0000988,3.44e-11,177;CL:0000134,5.99e-11,354;CL:0000048,1.58e-09,427;CL:0000723,3.86e-09,433;CL:0000034,1.22e-08,441;CL:0002619,5.28e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.84e-24;42!CL:0000049;5.36e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!1.85e-16!101;UBERON:0001434!1.85e-16!101;UBERON:0001474!2.20e-15!86;UBERON:0002371!9.02e-15!80;UBERON:0002204!1.57e-13!167;UBERON:0002405!5.07e-10!115;UBERON:0002390!2.74e-09!102;UBERON:0003061!2.74e-09!102;UBERON:0002193!1.60e-08!112;UBERON:0002384!5.38e-08!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;4.14e-07;5!UBERON:0002216;4.14e-07;5!UBERON:0011134;4.14e-07;5!UBERON:0002209;4.14e-07;5!UBERON:0002213;4.14e-07;5!UBERON:0007844;4.14e-07;5!UBERON:0011138;4.14e-07;5!UBERON:0001130;4.14e-07;5!UBERON:0001066;4.14e-07;5!UBERON:0001468;4.14e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.98e-44,90;UBERON:0001474,4.53e-41,82;UBERON:0002371,5.26e-41,76;UBERON:0001434,1.61e-38,100;UBERON:0002405,1.36e-34,93;UBERON:0002390,6.77e-29,98;UBERON:0003061,6.77e-29,98;UBERON:0002193,6.33e-28,108;UBERON:0002204,1.96e-22,167;UBERON:0002384,7.70e-13,371;UBERON:0003081,1.49e-12,203;UBERON:0000926,1.04e-07,315;UBERON:0004120,1.04e-07,315;UBERON:0006603,1.04e-07,315;UBERON:0011135,3.73e-07,5;UBERON:0002216,3.73e-07,5;UBERON:0011134,3.73e-07,5;UBERON:0002209,3.73e-07,5;UBERON:0002213,3.73e-07,5;UBERON:0005856,3.73e-07,5;UBERON:0005866,3.73e-07,5;UBERON:0005863,3.73e-07,5;UBERON:0007844,3.73e-07,5;UBERON:0011138,3.73e-07,5;UBERON:0001130,3.73e-07,5;UBERON:0001066,3.73e-07,5;UBERON:0001468,3.73e-07,5 | |||
|phase1_expression=0.54503513781167,0.856402095563933,0.704772020479856,0,1.78784437770915,0.872338524100369,0,1.26343974685366,0.261185628199839,0.245733936501509,0,0,0,2.59909341216098,2.65117900582333,1.34465029290355,0.602694528023977,0,0.975865597581014,0.246242116153576,0.204000691244253,0,0,0,0.125542639594803,0.0764134057479513,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,39.1852079919868,26.5592806135563,28.8484635750289,2.32637182047304,2.26725566213286,0.970336244751265,5.11343881192506,4.93401465626191,8.3620720141678,3.16461631554365,2.0492856522328,4.49316236788312,7.58440497620561,9.03678557017357,5.41705946377367,2.25890807451126,5.73102915121476,5.16864014223695,3.06083892370903,5.77672248736969,3.83602275479425,0,1.19678194572979,1.27867425159808,1.16083695451434,2.8369261234557,1.24564449799115,4.52247597462138,2.60741459210101,3.9093992046921,1.81619850790011,7.73383035573886,4.74693581161327,0.211255286311942,0,0.209658645508376,0.22465726229299,0.150176892841506,0.32145117339416,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,1.00267582127178,0.434539556882471,0,0,0.945348171640679,0.443458794925128,0.43917392846563,0.0654895377488563,0,0,12.6573483525327,13.5821195093428,11.1684686835847,0,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,1.77883131343355,0.33472061276467,0,0,0,0.735326160691737,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.25326102332916,1.72131935057184,2.58152958673932,0.354668382198357,0,0,0,1.8672662123986,0.134710672069688,0.163461903113459,0.151357427644931,1.15235184896,0.468642863667593,0.312160076830321,0.570471821544449,0.149448680551801,0.352303495931295,0.647491777472526,0.421352420106746,0.204154171254893,0.491337269247072,0.413303124703062,0,0.247266929278557,0,0,0.168336113954066,0.250237039743928,0.831192346452549,0.438977620880838,0.612975591598039,0.150238058906597,0,0.358779271377724,0,0,0.900273288253207,0.103052529238439,0.772921620136887,0.18611685633159,0.506328996723799,0.0974370051611986,0.504867548488229,0.276149695926898,0.969876340912871,0.710019185033229,0.302256294682921,0,0,0,0,0.487894824518382,0.132529768321485,0.580969714347592,0.829288440122964,0.252320850875628,0,0,0,0,0,0.721879481669586,0.354920400119532,0.337169380156203,1.20505514941741,0.220587945464788,0.217879444092406,0,0.674156540800822,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0.343135620597051,0.329250856225877,0,0,0,1.62904152655162,2.07986957055916,0,0,0.234817388471643,0,0,0,0,0,57.8609964305384,16.6143028248859,18.4302641238023,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0.888970520090367,1.14596527667483,1.17217447210047,0,0.616964956219941,1.8020583470635,0.285826432630578,0.448524337381443,1.30788020649984,0.5867062865676,0.258543431515556,0,0,0.797814349754612,2.08014873822732,0.771622122786426,0,0.532844358032199,0.142977993658148,0,0,0.325736184293735,0,0,1.20575750823834,0,0.099972991182057,37.703371998769,55.750537148966,50.6001454759276,0,0,0,0.868687840005475,0.61642896765115,0.895304816199478,0,0,0,0,1.01637849688985,0,0.773288812777695,0,0,0,0,0,3.43536176813592,0,3.7977103317963,0.623912584592421,0.713715955188647,0.473107245101804,0.35142424497814,1.80567659836631,0,1.03473071292505,0.664225598535437,0,1.65078867489357,0.979005787313703,0.343143423810856,0,0,0,0,0,0,0.744323423456331,0.153461973288062,0,0.384417447767103,0,0,0,0,0.177561725313127,0.246381468041427,0,0.116210378459959,0.120859449591622,0.200506470303285,0,0.34444334449382,0.546273504020151,1.18011973463482,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0.657779629937804,0.522870902049801,0.512900250232778,0.656029291399411,0.325378394664303,0.103041011647722,0.27470839445503,0.247528499761764,0,0,0,0.773365746336976,0.308097234229289,0.307007349452259,0.689182862422653,0.107420244868274,0.145016693914229,0.426133137080504,0.890320356467374,0,0,0,0,0.464845549297286,0.62962469366128,0,0,0,0,0.18532421910392,0,1.48863347743867,0.632758849437452,0,0.255897791311334,0.855877976067841,0,0,1.61885211824983,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0,0,0,0.682499557039929,0.848432591722276,0,0,0,0,1.73632660280006,2.62357900818653,0,0.92947049429925,0.281695602532241,0.286822704408103,0,0,0,0,0.329294892959902,0.379473173765715,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0.211673582723883,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,2.97501246323581,0,0,0,3.95572084034114,0,0.111443384277478,0.284136146806413,0,0,0,0,0,2.11486539543521,0.988823245360557,0,0.19924798825107,0.276283915531148,0,0.102268682502155,0,0.933118762985422,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0.10893846351899,0,0,0.797594390929008,0,0.179515288819544,0,0.31900115973192,0.366390373607449,0,0,0.156980256395025,1.66211681900156,0.67678698185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| |||
|short_description=p4@SLC38A6 | |||
}} |
Revision as of 20:24, 11 January 2014
Short description: | p4@SLC38A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC38A6_5end |
Coexpression cluster: | C462_CD14_Monocytederived_Macrophage_Hepatic_Dendritic_lung_adipose |
Association with transcript: | -140bp_to_ENST00000526105_5end |
EntrezGene: | SLC38A6 |
HGNC: | 19863 |
UniProt: | G3V3H5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 2.58e-48 | 59 |
monocyte | 2.58e-48 | 59 |
monoblast | 2.58e-48 | 59 |
promonocyte | 2.58e-48 | 59 |
macrophage dendritic cell progenitor | 2.46e-46 | 61 |
defensive cell | 1.92e-43 | 48 |
phagocyte | 1.92e-43 | 48 |
myeloid lineage restricted progenitor cell | 6.56e-42 | 66 |
granulocyte monocyte progenitor cell | 4.20e-41 | 67 |
myeloid leukocyte | 2.09e-37 | 72 |
classical monocyte | 3.34e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.34e-32 | 42 |
myeloid cell | 3.53e-26 | 108 |
common myeloid progenitor | 3.53e-26 | 108 |
nongranular leukocyte | 5.73e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 1.07e-17 | 120 |
macrophage | 2.17e-14 | 6 |
leukocyte | 2.73e-14 | 136 |
hematopoietic oligopotent progenitor cell | 1.84e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.84e-13 | 161 |
connective tissue cell | 5.27e-13 | 361 |
hematopoietic stem cell | 2.08e-12 | 168 |
motile cell | 1.06e-11 | 386 |
hematopoietic cell | 3.44e-11 | 177 |
mesenchymal cell | 5.99e-11 | 354 |
multi fate stem cell | 1.58e-09 | 427 |
somatic stem cell | 3.86e-09 | 433 |
stem cell | 1.22e-08 | 441 |
adult endothelial progenitor cell | 5.28e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.98e-44 | 90 |
bone element | 4.53e-41 | 82 |
bone marrow | 5.26e-41 | 76 |
skeletal system | 1.61e-38 | 100 |
immune system | 1.36e-34 | 93 |
hematopoietic system | 6.77e-29 | 98 |
blood island | 6.77e-29 | 98 |
hemolymphoid system | 6.33e-28 | 108 |
musculoskeletal system | 1.96e-22 | 167 |
connective tissue | 7.70e-13 | 371 |
lateral plate mesoderm | 1.49e-12 | 203 |
mesoderm | 1.04e-07 | 315 |
mesoderm-derived structure | 1.04e-07 | 315 |
presumptive mesoderm | 1.04e-07 | 315 |
intervertebral cartilage | 3.73e-07 | 5 |
symphysis | 3.73e-07 | 5 |
nonsynovial joint | 3.73e-07 | 5 |
fibrous joint | 3.73e-07 | 5 |
cartilaginous joint | 3.73e-07 | 5 |
developing mesenchymal condensation | 3.73e-07 | 5 |
pre-cartilage condensation | 3.73e-07 | 5 |
cartilaginous condensation | 3.73e-07 | 5 |
cartilage element | 3.73e-07 | 5 |
post-cranial axial skeletal system | 3.73e-07 | 5 |
vertebral column | 3.73e-07 | 5 |
intervertebral disk | 3.73e-07 | 5 |
intervertebral joint | 3.73e-07 | 5 |