FFCP PHASE1:Hg19::chr13:104778247..104778293,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C369 | |||
|description=CAGE_peak_at_chr13:104778247..104778293,+ | |||
|id=chr13:104778247..104778293,+ | |||
|ontology_enrichment_celltype=CL:0000064!9.66e-09!3;CL:0005012!9.66e-09!3;CL:0000067!9.66e-09!3;CL:0002304!9.66e-09!3;CL:0000306!6.50e-07!4;CL:0002222!6.50e-07!4;CL:0002224!6.50e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000306;3.10e-50;4!CL:0002222;3.10e-50;4!CL:0002224;3.10e-50;4!CL:0000075;8.32e-09;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,3.10e-50,4;CL:0002222,3.10e-50,4;CL:0002224,3.10e-50,4;CL:0000075,8.32e-09,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5409!9.63e-07!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000473!4.94e-12!8;UBERON:0000970!1.12e-10!20;UBERON:0002104!3.35e-10!21;UBERON:0000020!2.28e-09!23;UBERON:0007625!4.25e-09!11;UBERON:0003135!5.20e-09!11;UBERON:0001032!5.28e-09!24;UBERON:0004456!5.28e-09!24;UBERON:0001778!9.66e-09!3;UBERON:0001775!9.66e-09!3;UBERON:0001801!2.44e-07!14;UBERON:0010077!6.50e-07!4;UBERON:0005389!6.50e-07!4;UBERON:0000484!6.50e-07!4;UBERON:0002546!6.50e-07!4;UBERON:0000965!6.50e-07!4;UBERON:0001803!6.50e-07!4;UBERON:0003073!6.50e-07!4;UBERON:0005426!6.50e-07!4;UBERON:0000488!7.27e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0010077;3.10e-50;4!UBERON:0005389;3.10e-50;4!UBERON:0000484;3.10e-50;4!UBERON:0000965;3.10e-50;4!UBERON:0001803;3.10e-50;4!UBERON:0007625;2.25e-19;11!UBERON:0001801;1.43e-15;14!UBERON:0000019;6.95e-12;19!UBERON:0000047;6.95e-12;19!UBERON:0004088;6.95e-12;19!UBERON:0010230;6.95e-12;19!UBERON:0000970;2.29e-11;20!UBERON:0002104;6.74e-11;21!UBERON:0001456;6.74e-11;21!UBERON:0000020;4.42e-10;23!UBERON:0001032;1.01e-09;24!UBERON:0004456;1.01e-09;24!UBERON:0010371;4.53e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,3.10e-50,4;UBERON:0005389,3.10e-50,4;UBERON:0000484,3.10e-50,4;UBERON:0002546,3.10e-50,4;UBERON:0000965,3.10e-50,4;UBERON:0001803,3.10e-50,4;UBERON:0003073,3.10e-50,4;UBERON:0005426,3.10e-50,4;UBERON:0000076,5.22e-26,8;UBERON:0007625,2.25e-19,11;UBERON:0001801,1.43e-15,14;UBERON:0000019,2.29e-11,20;UBERON:0000047,2.29e-11,20;UBERON:0010312,2.29e-11,20;UBERON:0004088,2.29e-11,20;UBERON:0010230,2.29e-11,20;UBERON:0003072,2.29e-11,20;UBERON:0004128,2.29e-11,20;UBERON:0003071,2.29e-11,20;UBERON:0000970,6.74e-11,21;UBERON:0002104,6.74e-11,21;UBERON:0001456,1.80e-10,22;UBERON:0000020,1.01e-09,24;UBERON:0001032,1.01e-09,24;UBERON:0004456,1.01e-09,24;UBERON:0005085,7.41e-08,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.527008714158756,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.0275790019843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.803892390468535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr13:104778247..104778293,+ | |||
}} |
Revision as of 18:34, 11 January 2014
Short description: | p@chr13:104778247..104778293, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr13:104778247..104778293, + |
Coexpression cluster: | C369_Lens_eye_Ciliary_retina_H9_Retinal_Renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 3.10e-50 | 4 |
vertebrate lens cell | 3.10e-50 | 4 |
lens epithelial cell | 3.10e-50 | 4 |
columnar/cuboidal epithelial cell | 8.32e-09 | 27 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 3.10e-50 | 4 |
transparent eye structure | 3.10e-50 | 4 |
simple cuboidal epithelium | 3.10e-50 | 4 |
cranial placode | 3.10e-50 | 4 |
lens of camera-type eye | 3.10e-50 | 4 |
epithelium of lens | 3.10e-50 | 4 |
lens placode | 3.10e-50 | 4 |
lens vesicle | 3.10e-50 | 4 |
external ectoderm | 5.22e-26 | 8 |
pigment epithelium of eye | 2.25e-19 | 11 |
anterior segment of eyeball | 1.43e-15 | 14 |
camera-type eye | 2.29e-11 | 20 |
simple eye | 2.29e-11 | 20 |
immature eye | 2.29e-11 | 20 |
ocular region | 2.29e-11 | 20 |
eyeball of camera-type eye | 2.29e-11 | 20 |
optic cup | 2.29e-11 | 20 |
optic vesicle | 2.29e-11 | 20 |
eye primordium | 2.29e-11 | 20 |
eye | 6.74e-11 | 21 |
visual system | 6.74e-11 | 21 |
face | 1.80e-10 | 22 |
sense organ | 1.01e-09 | 24 |
sensory system | 1.01e-09 | 24 |
entire sense organ system | 1.01e-09 | 24 |
ectodermal placode | 7.41e-08 | 31 |