FFCP PHASE1:Hg19::chr12:66218443..66218461,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-129bp_to_ENST00000545998_5end | |||
|coexpression_cluster_id=C749 | |||
|description=CAGE_peak_8_at_HMGA2_5end | |||
|id=chr12:66218443..66218461,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.28e-24!248;CL:0000220!1.06e-23!246;CL:0000055!3.56e-20!180;CL:0000012!6.32e-19!682;CL:0000548!6.64e-19!679;CL:0000004!6.64e-19!679;CL:0000255!6.64e-19!679;CL:0000066!2.79e-17!254;CL:0002371!3.97e-14!591;CL:0000144!9.50e-14!625;CL:0000003!1.06e-10!722;CL:0000183!3.14e-10!59;CL:0000680!6.88e-10!57;CL:0000056!6.88e-10!57;CL:0000355!6.88e-10!57;CL:0000222!1.13e-09!119;CL:0000223!2.00e-09!59;CL:0000393!2.59e-09!60;CL:0000211!2.59e-09!60;CL:0000187!8.48e-09!54;CL:0002076!1.00e-08!43;CL:0000057!5.52e-08!75;CL:0000192!1.68e-07!42;CL:0000514!1.68e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.81e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.93e-18,250;CL:0000066,1.68e-13,253;CL:0000223,3.09e-08,58;CL:0000680,5.90e-08,58;CL:0000056,5.90e-08,58;CL:0000355,5.90e-08,58;CL:0000393,4.45e-07,61;CL:0000211,4.45e-07,61;CL:0002076,5.75e-07,42;CL:1000449,7.14e-07,15;CL:0000187,7.42e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.83e-14!143;UBERON:0000486!7.29e-13!82;UBERON:0002100!7.98e-13!216;UBERON:0000914!2.76e-12!83;UBERON:0002329!2.76e-12!83;UBERON:0003077!2.76e-12!83;UBERON:0003059!2.76e-12!83;UBERON:0007282!2.76e-12!83;UBERON:0009618!2.76e-12!83;UBERON:0007285!2.76e-12!83;UBERON:0003104!3.01e-12!238;UBERON:0009142!3.01e-12!238;UBERON:0000475!2.08e-11!365;UBERON:0000481!2.70e-11!347;UBERON:0002049!3.30e-11!79;UBERON:0007798!3.30e-11!79;UBERON:0000119!9.66e-11!312;UBERON:0003914!2.19e-10!118;UBERON:0004290!2.40e-10!70;UBERON:0000490!2.53e-10!138;UBERON:0000483!5.55e-10!309;UBERON:0001444!1.52e-08!48;UBERON:0005085!1.72e-08!29;UBERON:0000468!3.30e-08!659;UBERON:0000019!4.38e-08!19;UBERON:0000047!4.38e-08!19;UBERON:0004088!4.38e-08!19;UBERON:0003072!4.38e-08!19;UBERON:0003071!4.38e-08!19;UBERON:0004128!4.38e-08!19;UBERON:0001134!4.44e-08!61;UBERON:0002036!4.44e-08!61;UBERON:0003082!4.44e-08!61;UBERON:0003102!6.43e-08!95;UBERON:0000970!9.46e-08!20;UBERON:0001981!1.03e-07!60;UBERON:0007500!1.03e-07!60;UBERON:0004537!1.03e-07!60;UBERON:0006965!1.03e-07!60;UBERON:0000055!1.16e-07!69;UBERON:0002385!1.39e-07!63;UBERON:0001015!1.39e-07!63;UBERON:0000383!1.39e-07!63;UBERON:0001456!3.23e-07!21;UBERON:0000922!5.36e-07!612;UBERON:0002104!5.58e-07!21;UBERON:0001801!9.74e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0000019;2.59e-09;19!UBERON:0000047;2.59e-09;19!UBERON:0004088;2.59e-09;19!UBERON:0010230;2.59e-09;19!UBERON:0001456;1.44e-08;21!UBERON:0000970;1.65e-08;20!UBERON:0002104;8.64e-08;21!UBERON:0001801;1.34e-07;14!UBERON:0000020;3.09e-07;23!UBERON:0006555;3.81e-07;15!UBERON:0004819;3.81e-07;15!UBERON:0001285;3.81e-07;15!UBERON:0007684;3.81e-07;15!UBERON:0007625;3.84e-07;11!UBERON:0001444;7.05e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.01e-11,160;UBERON:0009142,1.01e-11,160;UBERON:0007503,2.54e-11,78;UBERON:0000486,2.63e-11,83;UBERON:0000119,1.22e-10,309;UBERON:0000490,1.97e-10,148;UBERON:0000483,8.13e-10,306;UBERON:0002329,3.60e-09,71;UBERON:0003059,3.60e-09,71;UBERON:0007282,3.60e-09,71;UBERON:0004290,3.60e-09,71;UBERON:0009618,3.60e-09,71;UBERON:0005256,3.77e-09,122;UBERON:0003914,4.07e-09,117;UBERON:0007524,6.75e-09,73;UBERON:0003077,7.75e-09,72;UBERON:0007285,7.75e-09,72;UBERON:0002100,8.02e-09,199;UBERON:0000019,1.37e-08,20;UBERON:0000047,1.37e-08,20;UBERON:0010312,1.37e-08,20;UBERON:0004088,1.37e-08,20;UBERON:0010230,1.37e-08,20;UBERON:0003072,1.37e-08,20;UBERON:0004128,1.37e-08,20;UBERON:0003071,1.37e-08,20;UBERON:0005085,2.27e-08,31;UBERON:0001444,3.39e-08,49;UBERON:0000033,6.06e-08,56;UBERON:0000970,7.24e-08,21;UBERON:0002104,7.24e-08,21;UBERON:0001456,7.78e-08,22;UBERON:0000922,8.80e-08,592;UBERON:0002049,1.07e-07,78;UBERON:0007798,1.07e-07,78;UBERON:0001801,1.22e-07,14;UBERON:0007625,2.98e-07,11;UBERON:0004211,7.14e-07,15;UBERON:0009773,7.14e-07,15;UBERON:0001231,7.14e-07,15;UBERON:0001285,7.14e-07,15;UBERON:0007684,7.14e-07,15;UBERON:0004208,7.14e-07,15 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.281908808191942,0,0,2.61701557230111,0,1.89515962028049,0,1.22866968250754,2.79120467188971,1.96597234917155,1.05506791291381,2.59909341216098,1.65698687863958,4.03395087871065,2.41077811209591,0.730310090387373,1.46379839637152,1.47745269692145,1.63200552995402,0.940364164434263,0.85870796139317,1.23186982565596,1.88313959392204,0.152826811495903,0.0821005894499457,0,0,0,0,1.83884244895785,3.614471025339,3.69754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0.50133791063589,0,0.795285947051099,2.91980922181582,4.44313640671119,3.99112915432615,4.12823492757692,0,4.73583874780305,2.22470665670658,0,0,0,0,0,0,1.19257444420023,0.860234595106124,1.38856200643038,0,2.09749718104953,1.37559020970034,1.8809546988313,0.775250277507987,0.71153252537342,2.00832367658802,0.402829317109147,0.760272105718513,0.24406205754817,3.30896772311282,1.62028389576352,2.76829157680647,3.36794058939255,2.70267553159973,1.53316637465883,4.74632829784064,1.83201743930407,0,0,1.3082821564276,0.496971951695318,1.2663051166458,2.51577443545116,1.43418310374407,1.41867352879343,0,1.06748995729705,2.4666754841716,2.48968828319813,1.75123873690594,2.94231425604226,1.36221684880438,1.72852777344,1.40592859100278,9.98912245857026,1.71141546463335,5.67904986096844,5.40198693761318,5.82742599725274,6.74163872170793,1.42907919878425,5.15904132709426,1.44656093646072,2.37600571456411,0.741800787835671,1.82032272387605,0.718618141816238,4.20840284885166,10.8853112288609,3.3247693858102,1.31693286264251,0.919463387397059,1.20190447125277,2.26864366320042,3.04962380671065,0.213557388818567,1.90738711043606,3.00091096084402,0.824420233907511,0.772921620136887,0.37223371266318,3.20675031258406,0.876933046450788,1.7670364197088,0.552299391853796,1.61646056818812,1.06502877754984,1.10827308050404,1.69560592310488,2.12586938479627,2.72746120590835,2.29443676311203,5.97671160035017,4.5060121229305,5.6935032006064,3.31715376049185,8.07426722802011,2.91981887260664,1.56449532329816,0,2.76269842704961,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,2.21446636387394,5.60967095213783,0.4115740113314,0,0,0,0,0.882926198829301,1.72183813960359,5.66173773985134,3.40225884766739,1.1240175325762,2.01057944823262,13.7956783286209,2.6064664424826,2.07986957055916,4.3299402607582,5.21686822387846,2.93521735589554,1.01056513432752,0.925971025153221,0.380508304469197,0,0,0,0,0,1.87467667973554,3.19166043577833,1.41775097242386,3.67189943081678,4.35950907770943,3.83382679165211,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,6.72786506072164,1.74384027533312,7.99387315448355,3.23179289394444,3.57656445851882,3.381211010224,2.12750493267896,0,3.60090323966999,9.92943924162948,7.45982101245078,0.57191197463259,1.62786481617433,0.823240336780769,0.325736184293735,0,2.37585561880029,0.602878754119172,1.74306691720059,0.199945982364114,0,0,0,3.11512312139057,0,17.1164286048862,2.60606352001643,6.36976599906189,3.9393411912777,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0.637938751653163,0,0,0,1.59498939234882,5.50187573165645,5.15403545029498,1.24782516918484,0.892144943985809,0.315404830067869,0.468565659970853,1.20378439891088,2.27407504055985,1.03473071292505,3.98535359121262,2.02806085395873,4.08352987999989,4.30762546418029,3.0882908142977,0,0,0,0,0,2.11673205330776,0.248107807818777,0.153461973288062,0,0.128139149255701,0.511707249066704,0.160853921143607,0,3.08419387605311,1.24293207719189,3.28508624055237,2.59627214591811,3.48631135379878,1.32945394550784,1.60405176242628,0.460404944679482,0.34444334449382,2.00300284807389,0.262248829918848,5.41439535488894,12.7845459593329,2.35304930753057,4.38417673959782,14.8827796738955,3.4120015221269,2.2112181685947,3.45465465763423,3.08454505380579,2.43851793789468,3.01013864312912,2.03901018436031,0.831076008928724,4.02974558499921,0.219259876645935,0.261435451024901,5.38545262744417,9.51242472529147,3.90454073597164,0,0.54941678891006,0.330037999682352,2.29706215198469,1.95018073810956,0,2.22342652071881,3.54311819363682,2.45605879561807,5.78913604435028,1.6113036730241,2.46528379654188,5.11359764496605,0.178064071293475,1.81813406897076,3.84380134730212,7.78437546216963,1.11273558941105,5.57814659156743,5.03699754929024,1.3940745403212,0.616067160352178,1.06461206063404,0.869932992075073,2.59453906745488,2.14687330112987,2.97726695487734,5.69482964493707,0.953150969619124,3.58256907835867,1.28381696410176,2.54562598340749,0.78494864019923,0.719489830333259,1.64722217841633,2.35624804691373,1.81964233415984,3.17020642346017,0.842516912477962,0,3.1682753652067,0,0.818999468447914,0.282810863907425,0,3.85955740482287,1.99031692572366,1.75380354101505,2.89387767133344,1.9676842561399,2.84074527747786,3.0982349809975,2.25356482025793,13.1938444027727,2.65272410735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| |||
|short_description=p8@HMGA2 | |||
}} |
Revision as of 14:27, 11 January 2014
Short description: | p8@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | -129bp_to_ENST00000545998_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.93e-18 | 250 |
epithelial cell | 1.68e-13 | 253 |
endodermal cell | 3.09e-08 | 58 |
muscle precursor cell | 5.90e-08 | 58 |
myoblast | 5.90e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.90e-08 | 58 |
electrically responsive cell | 4.45e-07 | 61 |
electrically active cell | 4.45e-07 | 61 |
endo-epithelial cell | 5.75e-07 | 42 |
epithelial cell of nephron | 7.14e-07 | 15 |
muscle cell | 7.42e-07 | 55 |