FFCP PHASE1:Hg19::chr12:66218212..66218244,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |||
|TSSclassifier=strong | |||
|UniProt=Q1M182,Q1M188,Q1M186,F5H6H0,Q1M187,Q1M185,P52926 | |||
|association_with_transcript=0bp_to_ENST00000354636,ENST00000393578,ENST00000425208,ENST00000536545,ENST00000537275,ENST00000537429,NM_003483,NM_003484,uc001sss.1,uc001sst.1,uc001ssu.1,uc001ssv.2,uc001ssw.1,uc001ssx.2,uc010ssv.1_5end | |||
|coexpression_cluster_id=C749 | |||
|description=CAGE_peak_5_at_HMGA2_5end | |||
|id=chr12:66218212..66218244,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.98e-27!248;CL:0000055!2.81e-27!180;CL:0000220!9.51e-27!246;CL:0000012!3.58e-22!682;CL:0000548!9.25e-22!679;CL:0000004!9.25e-22!679;CL:0000255!9.25e-22!679;CL:0002371!8.03e-20!591;CL:0000144!3.60e-18!625;CL:0000066!2.36e-16!254;CL:0000183!2.53e-14!59;CL:0000680!1.25e-13!57;CL:0000056!1.25e-13!57;CL:0000355!1.25e-13!57;CL:0000393!1.80e-13!60;CL:0000211!1.80e-13!60;CL:0000187!1.21e-12!54;CL:0000222!1.63e-12!119;CL:0000003!3.15e-12!722;CL:0000057!3.03e-10!75;CL:0000192!3.35e-09!42;CL:0000514!3.35e-09!42;CL:0000223!2.75e-08!59;CL:0002076!5.56e-08!43;CL:0000359!1.08e-07!32;CL:1000449!9.32e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000187;5.81e-08;55!CL:0000359;7.67e-08;32!CL:0000192;1.78e-07;43!CL:0000393;1.79e-07;61!CL:0000211;1.79e-07;61!CL:1000449;3.03e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.04e-26,250;CL:0000680,1.91e-14,58;CL:0000056,1.91e-14,58;CL:0000355,1.91e-14,58;CL:0000393,2.73e-14,61;CL:0000211,2.73e-14,61;CL:0000187,2.29e-13,55;CL:0000222,3.21e-13,121;CL:0000066,3.67e-13,253;CL:0000192,6.32e-10,43;CL:0000514,6.32e-10,43;CL:0000057,9.65e-09,76;CL:0000359,2.38e-08,32;CL:1000449,3.12e-07,15;CL:0000223,3.18e-07,58;CL:0002076,7.63e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000355;3.79e-08;58!CL:0000514;1.78e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!6.56e-19!143;UBERON:0000486!1.71e-16!82;UBERON:0000490!2.35e-16!138;UBERON:0000914!4.78e-16!83;UBERON:0002329!4.78e-16!83;UBERON:0003077!4.78e-16!83;UBERON:0003059!4.78e-16!83;UBERON:0007282!4.78e-16!83;UBERON:0009618!4.78e-16!83;UBERON:0007285!4.78e-16!83;UBERON:0000119!3.61e-15!312;UBERON:0003914!4.01e-15!118;UBERON:0002100!3.20e-14!216;UBERON:0000483!3.41e-14!309;UBERON:0004290!3.43e-13!70;UBERON:0002049!3.62e-13!79;UBERON:0007798!3.62e-13!79;UBERON:0000475!4.61e-12!365;UBERON:0003104!7.01e-12!238;UBERON:0009142!7.01e-12!238;UBERON:0001134!2.93e-11!61;UBERON:0002036!2.93e-11!61;UBERON:0003082!2.93e-11!61;UBERON:0000481!1.19e-10!347;UBERON:0002385!1.55e-10!63;UBERON:0001015!1.55e-10!63;UBERON:0000383!1.55e-10!63;UBERON:0001981!3.29e-10!60;UBERON:0007500!3.29e-10!60;UBERON:0004537!3.29e-10!60;UBERON:0006965!3.29e-10!60;UBERON:0001637!1.59e-09!42;UBERON:0003509!1.59e-09!42;UBERON:0004572!1.59e-09!42;UBERON:0000055!2.68e-09!69;UBERON:0000468!3.72e-09!659;UBERON:0003102!5.75e-09!95;UBERON:0001444!6.05e-09!48;UBERON:0004872!1.14e-08!84;UBERON:0000922!2.98e-08!612;UBERON:0000019!5.17e-08!19;UBERON:0000047!5.17e-08!19;UBERON:0004088!5.17e-08!19;UBERON:0003072!5.17e-08!19;UBERON:0003071!5.17e-08!19;UBERON:0004128!5.17e-08!19;UBERON:0004535!1.20e-07!110;UBERON:0005085!1.50e-07!29;UBERON:0002050!3.41e-07!605;UBERON:0005423!3.41e-07!605;UBERON:0000970!3.58e-07!20;UBERON:0001456!3.66e-07!21;UBERON:0000923!3.90e-07!604;UBERON:0005291!3.90e-07!604;UBERON:0006598!3.90e-07!604;UBERON:0002532!3.90e-07!604;UBERON:0001801!4.05e-07!14;UBERON:0000467!4.44e-07!625;UBERON:0001009!5.13e-07!113;UBERON:0000480!6.34e-07!626;UBERON:0004573!6.39e-07!33;UBERON:0004571!6.39e-07!33;UBERON:0004211!9.32e-07!16;UBERON:0001285!9.32e-07!16;UBERON:0007684!9.32e-07!16;UBERON:0003220!9.32e-07!16;UBERON:0004208!9.32e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0000019;7.03e-09;19!UBERON:0000047;7.03e-09;19!UBERON:0004088;7.03e-09;19!UBERON:0010230;7.03e-09;19!UBERON:0003914;7.64e-09;74!UBERON:0001456;4.48e-08;21!UBERON:0000970;4.63e-08;20!UBERON:0001801;8.21e-08;14!UBERON:0007500;1.76e-07;56!UBERON:0001981;1.76e-07;56!UBERON:0004537;1.76e-07;56!UBERON:0002104;2.48e-07;21!UBERON:0001637;2.73e-07;42!UBERON:0003509;2.73e-07;42!UBERON:0004572;2.73e-07;42!UBERON:0006555;3.03e-07;15!UBERON:0004819;3.03e-07;15!UBERON:0001285;3.03e-07;15!UBERON:0007684;3.03e-07;15!UBERON:0002049;5.07e-07;75!UBERON:0007798;5.07e-07;75!UBERON:0002385;8.09e-07;31!UBERON:0001015;8.09e-07;31!UBERON:0000383;8.09e-07;31!UBERON:0007625;8.66e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,1.17e-17,148;UBERON:0000486,4.98e-17,83;UBERON:0007503,7.30e-16,78;UBERON:0000119,2.05e-15,309;UBERON:0003914,3.60e-15,117;UBERON:0003104,6.22e-15,160;UBERON:0009142,6.22e-15,160;UBERON:0000483,2.24e-14,306;UBERON:0002049,2.43e-14,78;UBERON:0007798,2.43e-14,78;UBERON:0002329,3.95e-14,71;UBERON:0003059,3.95e-14,71;UBERON:0007282,3.95e-14,71;UBERON:0004290,3.95e-14,71;UBERON:0009618,3.95e-14,71;UBERON:0007524,1.07e-13,73;UBERON:0003077,1.24e-13,72;UBERON:0007285,1.24e-13,72;UBERON:0005256,3.83e-13,122;UBERON:0001134,2.78e-12,62;UBERON:0002036,2.78e-12,62;UBERON:0003082,2.78e-12,62;UBERON:0002385,2.51e-11,64;UBERON:0001015,2.51e-11,64;UBERON:0000383,2.51e-11,64;UBERON:0007500,6.80e-11,59;UBERON:0001981,6.80e-11,59;UBERON:0004537,6.80e-11,59;UBERON:0006965,6.80e-11,59;UBERON:0002100,9.65e-11,199;UBERON:0000055,3.90e-10,68;UBERON:0001637,4.62e-10,42;UBERON:0003509,4.62e-10,42;UBERON:0004572,4.62e-10,42;UBERON:0000033,6.30e-09,56;UBERON:0004535,6.42e-09,109;UBERON:0004872,7.28e-09,83;UBERON:0001444,1.76e-08,49;UBERON:0001009,4.04e-08,112;UBERON:0000019,5.06e-08,20;UBERON:0000047,5.06e-08,20;UBERON:0010312,5.06e-08,20;UBERON:0004088,5.06e-08,20;UBERON:0010230,5.06e-08,20;UBERON:0003072,5.06e-08,20;UBERON:0004128,5.06e-08,20;UBERON:0003071,5.06e-08,20;UBERON:0003102,6.86e-08,99;UBERON:0001801,1.03e-07,14;UBERON:0000922,1.16e-07,592;UBERON:0001456,2.65e-07,22;UBERON:0000970,2.69e-07,21;UBERON:0002104,2.69e-07,21;UBERON:0004211,3.12e-07,15;UBERON:0009773,3.12e-07,15;UBERON:0001231,3.12e-07,15;UBERON:0001285,3.12e-07,15;UBERON:0007684,3.12e-07,15;UBERON:0004208,3.12e-07,15;UBERON:0004573,3.31e-07,33;UBERON:0004571,3.31e-07,33;UBERON:0007625,8.00e-07,11;UBERON:0000153,9.69e-07,62;UBERON:0007811,9.69e-07,62 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0,0,0,0,0,4.42203911398782,0,9.09215565055583,10.4670175195864,1.96597234917155,1.31883489114227,6.80714941280256,3.31397375727916,4.70627602516243,9.04041792035965,8.76372108464848,12.1983199697627,3.57051068422685,5.50801866359483,0.940364164434263,0.572471974262113,2.46373965131192,4.3939923858181,1.52826811495903,1.14940825229924,0.865818594450472,0,0.383829398097213,0,4.59710612239464,11.4458249135735,2.21852406100073,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.36560687762909,0.895037932904712,0,0,0.144846518960824,2.3858578411533,4.37971383272372,22.4992864850481,19.7339163741682,18.093965852784,0,11.2931539370688,6.3033355273353,0,0,0,0,0,0,3.9752481473341,2.58070378531837,3.81854551768354,2.26123176769604,10.4874859052476,8.52865930014209,8.98678356108286,4.13466814670926,2.84613010149368,2.00832367658802,0.805658634218294,3.04108842287405,0,9.92690316933846,1.62028389576352,12.1447630466348,17.9623498100936,31.6438260158135,4.5994991239765,5.69559395740877,6.41206103756425,0,0,5.66922267785295,0.496971951695318,7.47120018821021,5.29636723252875,6.88407889797153,7.09336764396714,4.48542080113846,3.20246987189115,4.68668341992604,4.04574346019696,5.6578482269269,10.9519475086017,1.66493170409425,4.60940739583999,2.81185718200556,8.11616199758833,5.13424639390004,14.4965220135247,20.3161682653713,31.0796053186813,32.0227839281127,5.71631679513701,32.0597568183714,3.20309921644873,3.56400857184616,2.22540236350701,0,0,29.9638282838238,52.0493042667371,11.9137569658199,3.5118209670467,3.98434134538726,3.30523729594513,9.98203211808185,4.84352016359927,1.06778694409284,0.211931901159562,6.60200411385685,2.88547081867629,2.06112432036503,0.558350568994769,5.90717162844432,0.876933046450788,5.3011092591264,2.02509777013059,1.13152239773168,4.61512470271599,1.20902517873168,3.73033303083073,5.41130388857231,8.45512973831587,10.0381608386151,7.07447495551653,5.96383957446684,10.4574548582567,10.6770886665832,15.3915719034133,6.20461510428911,0,0.643240938192885,1.38134921352481,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,1.4763109092493,14.0241773803446,0.4115740113314,2.94017422771084,0,0,0,4.41463099414651,3.93563003337963,12.1813145311953,5.26801369961403,8.99214026060957,11.4603028549259,48.5163452630695,4.23550796903422,6.23960871167747,18.7630744632855,15.5346742666603,5.16598254637615,1.87676382089396,2.31492756288305,2.09279567458058,0,0,0,0,0,3.74935335947108,4.36753533317035,5.10390350072591,4.38836761243957,7.84711633987697,11.5014803749563,0,0,0,0,0,0,0,0,1.71072446022705,1.23392991243988,0,0,12.5586814466804,6.97536110133248,23.1015600335993,4.39523833576444,0,3.381211010224,1.32969058292435,1.04007436911366,21.0910046894957,25.5328437641901,30.3721284078353,1.14382394926518,1.62786481617433,1.64648067356154,2.93162565864362,0.710783897485092,9.50342247520115,1.20575750823834,0.871533458600294,0,0,0,0,1.67737398844108,0,67.0393453691376,4.05387658669222,17.670963739333,6.44619467663624,0,0,0,0,3.30323011489202,1.30139853857622,1.54657762555539,1.67516265334349,1.27587750330633,0,0,0,4.17151071845076,21.5073324055661,9.49427582949075,0.207970861530807,1.42743191037729,0,1.05427273493442,1.20378439891088,4.5481500811197,3.10419213877515,17.9340911604568,6.63729006750131,12.3374732544678,7.63624514104688,5.14715135716284,0,0,0,0,4.99306318531491,3.62868351995616,0.248107807818777,0.460385919864187,0.841980283299221,0,0,0.160853921143607,0,20.0472601943452,6.5697838365857,14.9471423945133,16.0968873046923,8.01851611373719,4.71351853407327,6.21570057940183,2.20994373446151,0.918515585316854,4.73437036817464,1.44236856455367,17.1455852904816,29.1117974254688,7.84349769176855,24.8436681910543,24.2768746453614,0,7.82431044271972,15.7618618754562,3.08454505380579,12.4635361270172,5.01689773854853,4.84264918785573,7.47968408035852,13.2086105286085,0,0,16.9257082576817,8.52838078819235,4.88067591996455,0,0.183138929636687,0.330037999682352,8.03971753194641,3.90036147621913,0,11.117132603594,12.0157921349423,12.1267903033642,28.5321705042978,12.568168649588,15.0817361670798,36.8179030437556,1.60257664164127,3.8015530533025,5.57351195358808,45.3025129355774,1.92199783625545,7.90237433805386,5.98143458978216,6.970372701606,1.84820148105653,2.12922412126809,6.08953094452551,2.7798632865588,1.86062352764589,4.83805880167568,7.90948561796815,3.24071329670502,8.18872932196268,4.70732886837312,7.63687795022248,1.56989728039846,3.95719406683292,4.66712950551293,8.60030537123511,3.03273722359974,4.75530963519025,3.79132610615083,2.92580243453754,2.43713489631284,1.05650146756755,2.32049849393576,0.282810863907425,6.78048699721457,2.2054613741845,1.32687795048244,4.38450885253763,3.47265320560013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| |||
|short_description=p5@HMGA2 | |||
}} |
Revision as of 14:26, 11 January 2014
Short description: | p5@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | 0bp_to_ENST00000354636, ENST00000393578, ENST00000425208, ENST00000536545, ENST00000537275, ENST00000537429, NM_003483, NM_003484, uc001sss.1, uc001sst.1, uc001ssu.1, uc001ssv.2, uc001ssw.1, uc001ssx.2, uc010ssv.1_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | Q1M182Q1M188Q1M186F5H6H0Q1M187Q1M185P52926 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.04e-26 | 250 |
muscle precursor cell | 1.91e-14 | 58 |
myoblast | 1.91e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.91e-14 | 58 |
electrically responsive cell | 2.73e-14 | 61 |
electrically active cell | 2.73e-14 | 61 |
muscle cell | 2.29e-13 | 55 |
mesodermal cell | 3.21e-13 | 121 |
epithelial cell | 3.67e-13 | 253 |
smooth muscle cell | 6.32e-10 | 43 |
smooth muscle myoblast | 6.32e-10 | 43 |
fibroblast | 9.65e-09 | 76 |
vascular associated smooth muscle cell | 2.38e-08 | 32 |
epithelial cell of nephron | 3.12e-07 | 15 |
endodermal cell | 3.18e-07 | 58 |
endo-epithelial cell | 7.63e-07 | 42 |