FFCP PHASE1:Hg19::chr12:65672321..65672354,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=253827 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27375 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IXL7 | |||
|association_with_transcript=-68bp_to_ENST00000308259,ENST00000355192,NM_001031679,NM_001193460,NM_198080_5end | |||
|description=CAGE_peak_2_at_MSRB3_5end | |||
|id=chr12:65672321..65672354,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.44e-18!119;CL:0000055!9.56e-18!180;CL:0000680!1.94e-15!57;CL:0000056!1.94e-15!57;CL:0000355!1.94e-15!57;CL:0000192!2.25e-15!42;CL:0000514!2.25e-15!42;CL:0000183!1.10e-14!59;CL:0000187!2.49e-14!54;CL:0000359!4.94e-14!32;CL:0000393!7.25e-11!60;CL:0000211!7.25e-11!60;CL:0000057!3.14e-10!75;CL:0002139!1.75e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.12e-16;32!CL:0002139;6.40e-13;24!CL:0000192;3.97e-09;43!CL:0000071;5.96e-09;18!CL:0000115;5.32e-08;36!CL:0002078;2.72e-07;45!CL:0000153;7.28e-07;9!CL:0000447;7.28e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.26e-19,121;CL:0000359,3.46e-17,32;CL:0000192,9.85e-14,43;CL:0000514,9.85e-14,43;CL:0002139,2.30e-13,24;CL:0000034,9.50e-11,441;CL:0000048,1.87e-10,427;CL:0000680,2.32e-10,58;CL:0000056,2.32e-10,58;CL:0000355,2.32e-10,58;CL:0000723,3.36e-10,433;CL:0002078,6.34e-10,45;CL:0000115,8.27e-10,36;CL:0000213,1.39e-09,58;CL:0000215,1.39e-09,58;CL:0000187,1.63e-09,55;CL:0000071,2.72e-09,18;CL:0002546,2.72e-09,18;CL:0000393,9.84e-08,61;CL:0000211,9.84e-08,61;CL:0000057,1.40e-07,76;CL:0000153,6.82e-07,9;CL:0000447,6.82e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000514;3.97e-09;43!CL:0002546;5.96e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!2.52e-22!113;UBERON:0000055!3.57e-22!69;UBERON:0004535!6.13e-22!110;UBERON:0002049!1.20e-21!79;UBERON:0007798!1.20e-21!79;UBERON:0001981!7.26e-20!60;UBERON:0007500!7.26e-20!60;UBERON:0004537!7.26e-20!60;UBERON:0006965!7.26e-20!60;UBERON:0004872!2.64e-18!84;UBERON:0001637!3.25e-18!42;UBERON:0003509!3.25e-18!42;UBERON:0004572!3.25e-18!42;UBERON:0000914!8.39e-18!83;UBERON:0002329!8.39e-18!83;UBERON:0003077!8.39e-18!83;UBERON:0003059!8.39e-18!83;UBERON:0007282!8.39e-18!83;UBERON:0009618!8.39e-18!83;UBERON:0007285!8.39e-18!83;UBERON:0004290!3.74e-16!70;UBERON:0000486!1.21e-15!82;UBERON:0001134!6.89e-14!61;UBERON:0002036!6.89e-14!61;UBERON:0003082!6.89e-14!61;UBERON:0002385!1.22e-13!63;UBERON:0001015!1.22e-13!63;UBERON:0000383!1.22e-13!63;UBERON:0004573!2.35e-13!33;UBERON:0004571!2.35e-13!33;UBERON:0003914!1.80e-09!118;UBERON:0000490!6.97e-09!138;UBERON:0005256!2.40e-08!143;UBERON:0000947!3.15e-08!21;UBERON:0010191!3.15e-08!21;UBERON:0000477!1.99e-07!286;UBERON:0000483!2.70e-07!309;UBERON:0000119!3.04e-07!312;UBERON:0006914!4.49e-07!25;UBERON:0002100!9.03e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;4.88e-17;42!UBERON:0003509;4.88e-17;42!UBERON:0004572;4.88e-17;42!UBERON:0007500;1.82e-15;56!UBERON:0001981;1.82e-15;56!UBERON:0004537;1.82e-15;56!UBERON:0000055;2.56e-15;65!UBERON:0004573;4.21e-14;33!UBERON:0004571;4.21e-14;33!UBERON:0002049;7.61e-12;75!UBERON:0007798;7.61e-12;75!UBERON:0006914;1.26e-10;25!UBERON:0004638;5.96e-09;18!UBERON:0001986;5.96e-09;18!UBERON:0004852;5.96e-09;18!UBERON:0003914;9.85e-09;74!UBERON:0000487;9.90e-09;22!UBERON:0004535;1.49e-07;109!UBERON:0010260;2.84e-07;9!UBERON:0000947;3.62e-07;21!UBERON:0010191;3.62e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,7.28e-31,68;UBERON:0007500,2.77e-27,59;UBERON:0001981,2.77e-27,59;UBERON:0004537,2.77e-27,59;UBERON:0006965,2.77e-27,59;UBERON:0002049,1.15e-26,78;UBERON:0007798,1.15e-26,78;UBERON:0004535,1.93e-24,109;UBERON:0001637,1.31e-23,42;UBERON:0003509,1.31e-23,42;UBERON:0004572,1.31e-23,42;UBERON:0001009,3.39e-23,112;UBERON:0004872,2.84e-22,83;UBERON:0004573,7.49e-16,33;UBERON:0004571,7.49e-16,33;UBERON:0003914,8.74e-14,117;UBERON:0000486,5.43e-12,83;UBERON:0006914,3.15e-11,25;UBERON:0002329,5.14e-11,71;UBERON:0003059,5.14e-11,71;UBERON:0007282,5.14e-11,71;UBERON:0004290,5.14e-11,71;UBERON:0009618,5.14e-11,71;UBERON:0003077,1.05e-10,72;UBERON:0007285,1.05e-10,72;UBERON:0007503,1.24e-10,78;UBERON:0007524,2.09e-10,73;UBERON:0003081,1.72e-09,203;UBERON:0004638,2.72e-09,18;UBERON:0001986,2.72e-09,18;UBERON:0004852,2.72e-09,18;UBERON:0000487,2.77e-09,22;UBERON:0001134,4.42e-09,62;UBERON:0002036,4.42e-09,62;UBERON:0003082,4.42e-09,62;UBERON:0000926,5.17e-09,315;UBERON:0004120,5.17e-09,315;UBERON:0006603,5.17e-09,315;UBERON:0000490,1.46e-08,148;UBERON:0002385,1.64e-08,64;UBERON:0001015,1.64e-08,64;UBERON:0000383,1.64e-08,64;UBERON:0010260,1.38e-07,9;UBERON:0000947,2.18e-07,21;UBERON:0010191,2.18e-07,21 | |||
|phase1_expression=1.45342703416445,0.642301571672949,0.563817616383885,2.00146596706261,0.446961094427288,0,0,0,0,0.245733936501509,0,0.436882744260345,0.527533956456907,0.495065411840187,0.994192127183747,0.672325146451775,3.01347264011988,0.730310090387373,0.975865597581014,0.246242116153576,0.816002764977012,0.313454721478088,0,0.273748850145768,0.502170558379211,0,0,0,0,0.383829398097213,0.309632246632152,0.919421224478927,0.30120591877825,0,0,0,8.51441274071057,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0.309706370895104,0.28769239232215,0,0,0.344745680736619,0,0,0,0,0,0,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,1.12101712596307,3.423993102076,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,5.42158728576849,1.50401373190767,0.724232594804119,2.3858578411533,1.45990461090791,0,0.886917589850256,0.527008714158756,0.196468613246569,0.364295288292542,0,0,0,0,1.90792499444274,0.571994910780128,1.11437250398869,1.59009925893364,1.72046919021225,1.04142150482278,1.69592382577203,3.35599548967925,2.20094433552054,1.46296476575767,1.03366703667732,2.84613010149368,1.33888245105868,2.01414658554573,1.52054421143703,1.22031028774085,1.83831540172934,0.81014194788176,2.14319347881791,1.79623498100936,1.57656072676651,0,0,1.64881569537367,0,0,0,2.98183171017191,1.39293562831038,1.58891016975863,1.14734648299525,1.06400514659507,1.68203280042692,1.06748995729705,0.74000264525148,1.55605517699883,1.0776853765575,1.79808093424805,0.908144565869588,0,0,0.312160076830321,1.71141546463335,1.04614076386261,0.822041490506354,0.485618833104395,1.12360645361799,1.22492502752936,0.245668634623536,0.929932030581889,2.37600571456411,1.48360157567134,1.82032272387605,0.718618141816238,0.336672227908132,0.625592599359821,0.831192346452549,1.75591048352335,1.22595118319608,1.35214253015937,1.24775401476023,0.358779271377724,0.640672166455702,0.635795703478686,0.900273288253207,2.26715564324566,0.257640540045629,1.11670113798954,0.675105328965065,1.07180705677318,0.757301322732344,1.28869858099219,1.61646056818812,0,1.71278566986988,1.18692414617341,1.15956511897978,2.45471508531751,1.14721838155602,0,0,0,0.207322110030741,0,0,1.56449532329816,1.92972281457866,5.52539685409922,0.928735856063958,0.721879481669586,0.236613600079688,0,0.964044119533928,0.330881918197182,0,0,0.269662616320329,0.392442930250692,0,0,1.40241773803446,1.6462960453256,0,0,0,0,0,0.122988438543114,0.686271241194102,1.20725313949488,0,0.100528972411631,0,0.325808305310325,1.03993478527958,0,0.231860809950154,1.87853910777315,1.87676382089396,2.31492756288305,1.71228737011138,0,0,0,0,0,0.93733833986777,1.00789276919316,0.708875486211932,0.53735113621709,0.871901815541886,0.383382679165211,3.4486426652716,5.72314821085969,0.621984346622316,3.89123874225796,2.01987893482208,0.253991577168676,0,0,0,0,0,0.571652865261156,0.672786506072164,0,0.51336800074665,0.387815147273333,3.57656445851882,0.845302752556,0.797814349754612,0,1.28603687131071,0,1.0656887160644,0.285955987316295,1.08524321078289,0,0.977208552881205,0,0.791951872933429,3.61727252471503,0,1.79951384127703,0,0,0,1.91699884393266,1.14861935834114,1.42636905040718,3.04040744001916,0.821905290201534,1.79060963239896,0,0.197030760201927,0,0,0.254094624222463,0,0,0,0,1.49801404789436,5.9832291840805,4.14415513436035,0.736148950314839,1.50051156317903,0.271265023699736,1.66376689224646,1.07057393278297,0.946214490203608,1.63997980989798,1.50473049863859,0,3.10419213877515,1.32845119707087,0.368738337083406,1.73767228936166,0.783204629850962,0.686286847621712,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0.30239029332968,1.24053903909388,0.460385919864187,0.841980283299221,0.896974044789907,0.511707249066704,0.482561763430822,0,2.7757744884478,3.19611105563629,1.8067974323038,2.07701771673448,3.60252173225874,0,0.802025881213139,0.184161977871793,0.459257792658427,0.728364672026868,1.18011973463482,0,0.15403067420883,0,0,0.105551628892876,2.27466768141793,1.87103075804167,0.215915916102139,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0,0.657779629937804,1.5686127061494,0,0,0,0.412164046590889,0.640986253728404,0.41254749960294,0.574265537996172,0.650060246036521,1.6068392984416,0.290012154876366,0.308097234229289,0.307007349452259,0.827019434907183,0.751941714077915,0.870100163485371,0.681813019328807,0.356128142586949,0,0.768760269460425,0.893288987462089,0.50578890427775,1.85938219718914,1.88887408098384,2.0911118104818,0.924100740528266,3.72614221221915,2.60979897622522,2.03856641014312,6.5837447901316,1.116475108079,0.632758849437452,1.5250415513906,0.511795582622668,0.855877976067841,0,4.70969184119538,0.899362287916574,1.64722217841633,0.824686816419805,1.41527737101321,3.17020642346017,3.79132610615083,0.975267478179181,2.68084838594413,2.11300293513511,0.818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| |||
|short_description=p2@MSRB3 | |||
}} |
Revision as of 14:25, 11 January 2014
Short description: | p2@MSRB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MSRB3_5end |
Coexpression cluster: | NA |
Association with transcript: | -68bp_to_ENST00000308259, ENST00000355192, NM_001031679, NM_001193460, NM_198080_5end |
EntrezGene: | MSRB3 |
HGNC: | 27375 |
UniProt: | Q8IXL7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.26e-19 | 121 |
vascular associated smooth muscle cell | 3.46e-17 | 32 |
smooth muscle cell | 9.85e-14 | 43 |
smooth muscle myoblast | 9.85e-14 | 43 |
endothelial cell of vascular tree | 2.30e-13 | 24 |
stem cell | 9.50e-11 | 441 |
multi fate stem cell | 1.87e-10 | 427 |
muscle precursor cell | 2.32e-10 | 58 |
myoblast | 2.32e-10 | 58 |
multi-potent skeletal muscle stem cell | 2.32e-10 | 58 |
somatic stem cell | 3.36e-10 | 433 |
meso-epithelial cell | 6.34e-10 | 45 |
endothelial cell | 8.27e-10 | 36 |
lining cell | 1.39e-09 | 58 |
barrier cell | 1.39e-09 | 58 |
muscle cell | 1.63e-09 | 55 |
blood vessel endothelial cell | 2.72e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.72e-09 | 18 |
electrically responsive cell | 9.84e-08 | 61 |
electrically active cell | 9.84e-08 | 61 |
fibroblast | 1.40e-07 | 76 |
GAG secreting cell | 6.82e-07 | 9 |
carbohydrate secreting cell | 6.82e-07 | 9 |