FFCP PHASE1:Hg19::chr12:57146095..57146149,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5557 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9369 | |||
|TSSclassifier=strong | |||
|UniProt=P49642,F5H513,F8VNY2 | |||
|association_with_transcript=0bp_to_ENST00000338193,ENST00000537418,ENST00000548173,ENST00000550224,ENST00000550770,ENST00000552853,NM_000946,uc001smd.2,uc001sme.1,uc001smf.2,uc009zoz.1_5end | |||
|coexpression_cluster_id=C109 | |||
|description=CAGE_peak_1_at_PRIM1_5end | |||
|id=chr12:57146095..57146149,- | |||
|ontology_enrichment_celltype=CL:0002319!5.26e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;5.03e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.25e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.68e-59!235;DOID:14566!3.06e-57!239;DOID:0050687!3.99e-34!143;DOID:305!4.18e-29!106;DOID:0050686!9.31e-27!137;DOID:2531!2.40e-22!51;DOID:0060083!2.40e-22!51;DOID:1240!1.17e-18!39;DOID:8692!5.86e-15!31;DOID:3095!3.69e-07!22;DOID:2994!3.69e-07!22;DOID:7!7.35e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.06e-14;39!DOID:8692;1.61e-14;31!DOID:2531;3.90e-14;51!DOID:0060083;3.90e-14;51!DOID:305;1.53e-09;106!DOID:0050687;3.34e-08;143!DOID:14566;1.63e-07;239!DOID:162;2.93e-07;235!DOID:3095;3.75e-07;22!DOID:2994;3.75e-07;22!DOID:0050686;7.52e-07;137 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.08e-59,235;DOID:14566,3.35e-57,239;DOID:0050687,4.43e-34,143;DOID:305,4.11e-29,106;DOID:0050686,1.02e-26,137;DOID:2531,2.37e-22,51;DOID:0060083,2.37e-22,51;DOID:1240,1.16e-18,39;DOID:8692,5.81e-15,31;DOID:3095,3.68e-07,22;DOID:2994,3.68e-07,22;DOID:7,7.32e-07,39 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=2.18014055124668,2.99740733447376,2.25527046553554,1.0007329835313,1.34088328328186,0.872338524100369,5.06599756336621,3.15859936713415,3.65659879479774,11.7952289520724,4.88460817580699,10.9220686065086,5.53910654279752,5.94078494208224,3.64537113300707,2.6893005858071,1.80808358407193,1.46062018077475,0.975865597581014,15.7594954338289,6.9360235023046,3.44800193625897,37.2106783270374,22.1736568618072,20.8400781727373,32.0936304141395,33.4149399061279,38.0173073745071,3.93364276848904,2.68680578668049,2.78669021968937,14.7107395916628,6.024118375565,8.8740962440029,75.3755861646335,30.9928926822579,55.1968825949513,1.66198622559563,1.80490002723128,1.51907609501096,5.37397138175818,3.56283032620878,4.89393578504954,0.436194716338694,0,1.21292030593908,0.464858073811369,0,0.619412741790207,0.28769239232215,0.256160706529101,0.236482229888585,1.03423704220986,0.645484683583826,0,0.188242339542605,0.545812300115692,0.674170453335254,0.918251677112708,0.641858054152187,1.27867425159808,0.329851300186716,0,1.27867425159808,0,0.56738522469114,0.622822248995575,0.251248665256743,0.521482918420201,1.08594422352558,3.02699751316684,0.736555271975129,0.632924774881769,8.02770087985379,8.71677629856678,5.66078342872615,2.47122988522289,2.4028302854641,3.85741408072992,16.5307391369924,13.7252507267372,15.8917813775232,15.839662001519,10.3766336139805,19.5692035849982,17.9226693477933,19.6194033647646,17.2425731986345,15.2040320740518,11.4486450544244,5.12291672198504,3.52342313622563,2.6759125968766,14.5388461436928,10.6496626966492,64.792484854669,6.49142241375649,4.32311839024081,5.55124047298675,16.3842765482865,15.6442687984123,19.8848078408588,19.4826728407911,17.3800312740871,11.4896303915187,11.2982286237647,13.8109970520158,18.7013326799486,20.9395549571404,20.2258622662522,25.9769016718697,24.6332622874795,18.8323935215817,16.5875313415622,7.31748666634838,30.1402851575526,13.0294967824653,11.3397057009268,12.9040042929946,17.5210977878253,17.5792532541233,17.1081368000707,15.6598123840884,21.3737640627879,27.4847598415161,16.1008531389931,11.4957919568947,5.84659555351724,4.01160293675261,2.75166367377318,0,7.37770945674,5.75381528295886,17.7105184668437,1.50401373190767,2.462390822334,4.7717156823066,2.43317435151318,19.1905678843058,6.65188192387692,6.49977414129133,8.44815036960246,4.00724817121796,5.93255108455087,1.9472843619281,1.56716763569341,3.0580330919339,3.81584998888547,5.71994910780128,4.82894751728434,8.74554592413502,5.16140757063675,5.20710752411391,1.13061588384802,5.45349267072878,7.70330517432189,9.61376846069329,3.10100111003195,3.5576626268671,5.02080919147005,6.44526907374635,7.60272105718513,2.19655851793353,13.971197053143,1.62028389576352,19.2887413093612,12.7981742396917,13.8512120994486,3.06633274931766,6.6448596169769,5.67925406184263,0,0,3.48875241714027,0.993943903390637,9.11739683984974,0.529636723252875,6.88407889797153,17.0240823455211,6.72813120170769,6.4049397437823,1.72667283892012,6.53543174339509,6.19669091520565,13.7307998615305,3.78393569112329,2.88087962239999,3.04617861383936,2.18512053781224,11.9799082524334,3.58676833324323,41.2195090239615,35.2883018722527,39.8880291034386,5.30800845262722,29.9715734240714,4.33968280938215,5.94001428641027,3.4617370098998,4.55080680969013,0,40.2323312350218,32.2805781269668,11.3596287348515,9.65750765937843,6.43624371177941,2.85452311922534,17.6954205729633,19.9122495614637,4.69826255400848,7.41761654058466,21.606558918077,8.55335992679043,3.34932702059318,3.7223371266318,21.0970415301583,10.815507572893,17.1654966485998,5.70709371582256,5.98090410229604,7.10019185033229,12.1910038855445,11.5301202771132,6.57086900755209,6.81865301477087,4.87567812161307,45.1302712679503,57.1203301465601,58.3293593204982,24.8786532036889,47.6886408154938,74.4553812514693,6.25798129319264,0,9.66944449467364,1.39310378409594,2.16563844500876,60.4547748203602,52.7670079944458,67.7240993972584,59.6690392482251,55.9950171317484,57.4194898248854,58.1122938170309,57.2966678166011,67.3307524656183,4.42893272774789,0,2.8810180793198,0,7.60530208930985,0.982827216677626,4.13552934676983,79.9048209940517,30.5011327586922,7.89211927373218,2.52425656439839,7.86812272803337,18.4973309237401,19.9065157090839,0.977424915930974,4.15973914111831,8.6598805215164,11.9408317124329,1.87853910777315,9.81691844775302,8.7967247389556,11.0347408296067,18.9649055510226,23.1791263765616,7.63272718870932,10.0621834009872,19.4706822598234,0.93733833986777,2.51973192298289,7.65585525108887,25.7928545384203,25.2851526507147,14.1851591291128,4.43396914106349,15.7606696883675,4.56121854189699,5.47655822984453,4.29224273649692,46.0994712561147,7.25778008560728,8.20522130470329,1.71072446022705,33.2132801431735,24.0274446275134,8.28896654628677,13.5678612057886,7.41132117016576,38.7226149134616,1.03417372606222,3.57656445851882,9.298330278116,1.32969058292435,1.04007436911366,14.9180277072042,12.766421882095,8.25908754949908,3.57444984145369,1.62786481617433,8.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| |||
|short_description=p1@PRIM1 | |||
}} |
Revision as of 14:05, 11 January 2014
Short description: | p1@PRIM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRIM1_5end |
Coexpression cluster: | C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma |
Association with transcript: | 0bp_to_ENST00000338193, ENST00000537418, ENST00000548173, ENST00000550224, ENST00000550770, ENST00000552853, NM_000946, uc001smd.2, uc001sme.1, uc001smf.2, uc009zoz.1_5end |
EntrezGene: | PRIM1 |
HGNC: | 9369 |
UniProt: | P49642F5H513F8VNY2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.25e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.08e-59 | 235 |
disease of cellular proliferation | 3.35e-57 | 239 |
cell type cancer | 4.43e-34 | 143 |
carcinoma | 4.11e-29 | 106 |
organ system cancer | 1.02e-26 | 137 |
hematologic cancer | 2.37e-22 | 51 |
immune system cancer | 2.37e-22 | 51 |
leukemia | 1.16e-18 | 39 |
myeloid leukemia | 5.81e-15 | 31 |
germ cell and embryonal cancer | 3.68e-07 | 22 |
germ cell cancer | 3.68e-07 | 22 |
disease of anatomical entity | 7.32e-07 | 39 |