FFCP PHASE1:Hg19::chr12:56349633..56349678,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_at_chr12:56349633..56349678,- | |||
|id=chr12:56349633..56349678,- | |||
|ontology_enrichment_celltype=CL:0000148!7.05e-53!10;CL:0000541!7.05e-53!10;CL:0000147!4.39e-45!14;CL:0000710!1.50e-25!20;CL:0000075!1.87e-18!27;CL:0002567!1.69e-17!3;CL:0002322!8.08e-17!5;CL:0000325!7.78e-15!39;CL:0002077!9.09e-15!33;CL:0002537!6.05e-11!5;CL:0000333!6.50e-11!41;CL:0000349!4.39e-08!3;CL:0002577!4.39e-08!3;CL:0000039!4.53e-08!7;CL:0000586!4.53e-08!7;CL:0002541!4.89e-08!3;CL:0000133!3.57e-07!59;CL:0002566!7.39e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000148;9.74e-33;10!CL:0002537;1.59e-24;5!CL:0000147;2.00e-23;14!CL:0002567;1.55e-18;3!CL:0000039;4.54e-18;7!CL:0000586;4.54e-18;7!CL:0000710;2.02e-16;20!CL:0000075;3.63e-12;27!CL:0002077;2.82e-08;34!CL:0000349;6.98e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.11e-32,10;CL:0000541,1.11e-32,10;CL:0002537,1.53e-24,5;CL:0000147,2.20e-23,14;CL:0002567,1.36e-18,3;CL:0000039,4.68e-18,7;CL:0000586,4.68e-18,7;CL:0000710,2.16e-16,20;CL:0000075,3.81e-12,27;CL:0002077,1.22e-09,34;CL:0000333,1.32e-07,41;CL:0000349,6.91e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!4.43e-12!2;DOID:1799!3.13e-07!1;DOID:10165!3.13e-07!1;DOID:1798!3.13e-07!1;DOID:178!4.69e-07!1;DOID:326!4.69e-07!1;DOID:3978!4.69e-07!1;DOID:3394!4.69e-07!1;DOID:5844!4.69e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:1799;5.42e-15;1!DOID:10165;5.42e-15;1!DOID:1798;5.42e-15;1!DOID:178;2.11e-14;1!DOID:326;2.11e-14;1!DOID:3978;2.11e-14;1!DOID:3394;2.11e-14;1!DOID:5844;2.11e-14;1!DOID:114;7.52e-08;2!DOID:1909;7.52e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,5.42e-15,1;DOID:10165,5.42e-15,1;DOID:1798,5.42e-15,1;DOID:178,1.41e-14,1;DOID:326,1.41e-14,1;DOID:3978,1.41e-14,1;DOID:3394,1.41e-14,1;DOID:5844,1.41e-14,1;DOID:114,6.15e-08,2;DOID:1909,6.58e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.03e-23!14;UBERON:0000158!1.03e-23!14;UBERON:0003124!1.04e-18!7;UBERON:0000478!2.45e-13!24;UBERON:0001987!2.00e-12!4;UBERON:0004340!2.00e-12!4;UBERON:0004923!2.99e-11!57;UBERON:0000476!4.89e-08!3;UBERON:0000920!4.89e-08!3;UBERON:0000305!6.14e-08!7;UBERON:0004871!5.40e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;1.01e-17;7!UBERON:0005631;1.35e-12;10!UBERON:0000158;1.35e-12;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,9.86e-18,7;UBERON:0004871,1.34e-15,8;UBERON:0005631,3.64e-09,14;UBERON:0000158,3.64e-09,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.888970520090367,0.381988425558278,3.51652341630141,1.71072446022705,1.43958489784653,3.30377363628309,1.42913216315289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,7.42411702081597,5.22173193568695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.14748103602986,61.035198198645,14.4501004656271,0.957003479195758,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,1.7127920012698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,44.2622313673604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:56349633..56349678,- | |||
}} |
Revision as of 13:57, 11 January 2014
Short description: | p@chr12:56349633..56349678, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:56349633..56349678, - |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.11e-32 | 10 |
melanoblast | 1.11e-32 | 10 |
amnion mesenchymal stem cell | 1.53e-24 | 5 |
pigment cell | 2.20e-23 | 14 |
light melanocyte | 1.36e-18 | 3 |
germ line cell | 4.68e-18 | 7 |
germ cell | 4.68e-18 | 7 |
neurecto-epithelial cell | 2.16e-16 | 20 |
columnar/cuboidal epithelial cell | 3.81e-12 | 27 |
ecto-epithelial cell | 1.22e-09 | 34 |
migratory neural crest cell | 1.32e-07 | 41 |
extraembryonic cell | 6.91e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
amnion | 9.86e-18 | 7 |
somatic layer of lateral plate mesoderm | 1.34e-15 | 8 |
extraembryonic membrane | 3.64e-09 | 14 |
membranous layer | 3.64e-09 | 14 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 5.42e-15 | 1 |
endocrine pancreas cancer | 5.42e-15 | 1 |
pancreatic endocrine carcinoma | 5.42e-15 | 1 |
vascular disease | 1.41e-14 | 1 |
ischemia | 1.41e-14 | 1 |
extrinsic cardiomyopathy | 1.41e-14 | 1 |
myocardial ischemia | 1.41e-14 | 1 |
myocardial infarction | 1.41e-14 | 1 |
heart disease | 6.15e-08 | 2 |
melanoma | 6.58e-08 | 2 |