FFCP PHASE1:Hg19::chr12:7941989..7942014,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79923 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20857 | |||
|TSSclassifier=strong | |||
|UniProt=Q6NSW7,Q9H9S0 | |||
|association_with_transcript=0bp_to_ENST00000229307,NM_024865,uc009zfy.1_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_NANOG_5end | |||
|id=chr12:7941989..7942014,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.56e-65!5;CL:0000039!5.27e-31!7;CL:0000586!5.27e-31!7;CL:0000540!7.79e-21!6;CL:0000031!7.79e-21!6;CL:0000404!7.79e-21!6;CL:0000047!8.56e-16!8;CL:0000148!1.97e-12!10;CL:0000541!1.97e-12!10;CL:0000147!4.81e-09!14;CL:0000133!1.50e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;3.80e-65;5!CL:0000039;5.07e-31;7!CL:0000586;5.07e-31;7!CL:0002321;7.67e-22;15!CL:0000540;7.79e-21;6!CL:0000404;7.79e-21;6!CL:0000148;2.01e-12;10!CL:0000147;4.88e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.56e-65,5;CL:0000039,5.27e-31,7;CL:0000586,5.27e-31,7;CL:0000540,7.79e-21,6;CL:0000031,7.79e-21,6;CL:0000404,7.79e-21,6;CL:0000047,8.56e-16,8;CL:0000148,1.97e-12,10;CL:0000541,1.97e-12,10;CL:0000147,4.81e-09,14;CL:0000133,1.50e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.75e-33;10!UBERON:0005564;2.75e-33;10!CL:0000031;7.79e-21;6 | |||
|ontology_enrichment_disease=DOID:3095!1.96e-21!22;DOID:2994!1.96e-21!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.89e-21;22!DOID:2994;1.89e-21;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.96e-21,22;DOID:2994,1.96e-21,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.48e-27!8;UBERON:0003135!7.06e-20!11;UBERON:0000991!6.97e-16!21;UBERON:0009196!6.97e-16!21;UBERON:0009117!6.97e-16!21;UBERON:0005564!6.97e-16!21;UBERON:0004176!3.67e-15!22;UBERON:0003101!4.40e-10!22;UBERON:0000079!4.40e-10!22;UBERON:0002323!3.18e-07!46;UBERON:0003133!6.43e-07!48;UBERON:0004458!8.95e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.37e-27;8!UBERON:0003135;6.89e-20;11!UBERON:0000991;6.75e-16;21!UBERON:0000922;2.90e-13;49!UBERON:0003101;4.35e-10;22!UBERON:0000079;4.35e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.48e-27,8;UBERON:0003135,7.06e-20,11;UBERON:0000991,6.97e-16,21;UBERON:0009196,6.97e-16,21;UBERON:0009117,6.97e-16,21;UBERON:0005564,6.97e-16,21;UBERON:0004176,3.67e-15,22;UBERON:0003101,4.40e-10,22;UBERON:0000079,4.40e-10,22;UBERON:0002323,3.18e-07,46;UBERON:0003133,6.43e-07,48;UBERON:0004458,8.95e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.6880312914182,22.397530846331,23.8197582882513,10.2624444465217,29.0168978506973,25.9133924943839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40.9920528585799,42.7747647817397,59.4079683381735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0933139868063,17.1546947983002,0,25.3952186057535,83.1046130375893,43.6500772790513,50.6429229370598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@NANOG | |||
}} |
Revision as of 11:54, 11 January 2014
Short description: | p1@NANOG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NANOG_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000229307, NM_024865, uc009zfy.1_5end |
EntrezGene: | NANOG |
HGNC: | 20857 |
UniProt: | Q6NSW7Q9H9S0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.56e-65 | 5 |
germ line cell | 5.27e-31 | 7 |
germ cell | 5.27e-31 | 7 |
neuron | 7.79e-21 | 6 |
neuroblast | 7.79e-21 | 6 |
electrically signaling cell | 7.79e-21 | 6 |
neuronal stem cell | 8.56e-16 | 8 |
melanocyte | 1.97e-12 | 10 |
melanoblast | 1.97e-12 | 10 |
pigment cell | 4.81e-09 | 14 |
neurectodermal cell | 1.50e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 3.48e-27 | 8 |
male reproductive organ | 7.06e-20 | 11 |
gonad | 6.97e-16 | 21 |
indifferent external genitalia | 6.97e-16 | 21 |
indifferent gonad | 6.97e-16 | 21 |
gonad primordium | 6.97e-16 | 21 |
external genitalia | 3.67e-15 | 22 |
male organism | 4.40e-10 | 22 |
male reproductive system | 4.40e-10 | 22 |
body cavity | 3.18e-07 | 46 |
reproductive organ | 6.43e-07 | 48 |
body cavity or lining | 8.95e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.96e-21 | 22 |
germ cell cancer | 1.96e-21 | 22 |