FFCP PHASE1:Hg19::chr11:66139199..66139274,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3177 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11004 | |||
|TSSclassifier=strong | |||
|UniProt=Q14542,Q96FB2 | |||
|association_with_transcript=16bp_to_ENST00000357440,ENST00000540386,NM_001532,uc001oht.2_5end | |||
|description=CAGE_peak_1_at_SLC29A2_5end | |||
|id=chr11:66139199..66139274,- | |||
|ontology_enrichment_celltype=CL:0000066!4.83e-12!254 | |||
|ontology_enrichment_celltype_v019=CL:1000507;5.72e-07;10!CL:1000494;5.72e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.37e-11,253;CL:1000507,5.64e-07,10;CL:1000494,5.64e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!5.21e-17!143;DOID:305!7.85e-17!106;DOID:162!8.50e-15!235;DOID:14566!1.95e-13!239;DOID:299!5.96e-09!25;DOID:0050686!9.48e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:299;3.87e-09;25!DOID:3095;5.91e-07;22!DOID:2994;5.91e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.45e-17,143;DOID:305,7.53e-17,106;DOID:162,2.62e-15,235;DOID:14566,4.19e-14,239;DOID:299,3.27e-09,25;DOID:0050686,3.37e-07,137;DOID:3095,6.64e-07,22;DOID:2994,6.64e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000064!1.43e-12!219;UBERON:0002346!8.90e-12!90;UBERON:0000481!8.85e-11!347;UBERON:0000924!2.19e-10!173;UBERON:0006601!2.19e-10!173;UBERON:0003075!3.07e-10!86;UBERON:0007284!3.07e-10!86;UBERON:0000073!1.72e-09!94;UBERON:0001016!1.72e-09!94;UBERON:0005177!3.14e-09!107;UBERON:0004121!3.54e-09!169;UBERON:0005743!4.81e-09!86;UBERON:0000063!9.66e-09!97;UBERON:0003056!1.20e-08!61;UBERON:0001049!3.40e-08!57;UBERON:0005068!3.40e-08!57;UBERON:0006241!3.40e-08!57;UBERON:0007135!3.40e-08!57;UBERON:0001017!4.31e-08!82;UBERON:0007023!7.62e-08!115;UBERON:0000153!8.71e-08!129;UBERON:0007811!8.71e-08!129;UBERON:0000033!1.19e-07!123;UBERON:0004119!1.52e-07!169;UBERON:0000925!1.52e-07!169;UBERON:0006595!1.52e-07!169;UBERON:0002616!2.52e-07!59;UBERON:0000464!3.51e-07!104;UBERON:0004921!3.70e-07!129;UBERON:0004185!3.70e-07!129;UBERON:0001007!9.05e-07!155;UBERON:0001555!9.05e-07!155;UBERON:0007026!9.05e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.72e-07;10!UBERON:0009773;5.72e-07;10!UBERON:0001231;5.72e-07;10!UBERON:0004810;5.72e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,2.50e-11,223;UBERON:0002346,1.10e-10,86;UBERON:0005177,3.64e-09,101;UBERON:0003075,3.67e-09,82;UBERON:0007284,3.67e-09,82;UBERON:0004121,8.24e-09,171;UBERON:0000924,8.24e-09,171;UBERON:0006601,8.24e-09,171;UBERON:0001016,3.29e-08,89;UBERON:0003056,7.79e-08,61;UBERON:0001049,8.04e-08,56;UBERON:0005068,8.04e-08,56;UBERON:0006241,8.04e-08,56;UBERON:0007135,8.04e-08,56;UBERON:0001017,8.77e-08,81;UBERON:0000073,1.17e-07,53;UBERON:0002616,1.17e-07,53;UBERON:0010371,2.84e-07,104;UBERON:0007023,3.76e-07,114;UBERON:0004810,5.64e-07,10 | |||
|phase1_expression=0.726713517082227,18.6267455785155,2.39622486963151,2.00146596706261,2.68176656656373,0,5.06599756336621,1.26343974685366,5.74608382039645,11.7952289520724,62.8021051175185,2.83973783769224,4.22027165165526,1.11389717664042,2.31978163009541,0,0,0,0,2.70866327768933,3.4680117511523,2.82109249330279,7.44213566540748,9.17058647988324,15.8183725889452,7.33568695180332,5.09023654589664,7.16268109954481,0,0,0,5.51652734687356,4.2168828628955,2.21852406100073,4.02829443017569,19.4771848507767,7.63361142270603,0,0,0,0.447830948479849,0.647787332037959,0.257575567634187,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,1.77901850772711,0.426730222566507,1.60158394814405,1.14950487990897,2.64417949113945,1.90810750907073,2.27685187643779,2.93618594685469,1.14681968437569,1.32171328579026,1.12101712596307,7.63813845847723,0.196709770113833,1.57204305099666,0.205601498999509,2.67498392625085,1.62961133316795,1.89379122293893,5.84480185223734,0.668462741311041,0.589211814949674,1.32920336750173,0.541607727530031,0.640456598628376,1.69077151827842,1.97325485524411,1.38175008892924,1.73881851441031,4.59688345802387,2.1403266247177,1.04535523804977,1.35971211237079,1.14966148080576,1.37450978193052,1.77113784413652,1.27426165729639,2.60433381542567,0,2.55977702432214,1.27986611154418,4.99722906209383,1.4206635122641,0.821127996921047,1.00803371612366,1.06976078313403,1.73789284659359,0,0,1.40648818027883,0,0,0,0,0,9.64255135073492,16.8514342071549,12.4725395684239,3.33996642519167,8.01449634243593,1.85392221392215,0,0.174129737299267,0.398873881556595,0.953962497221368,0,0,1.19257444420023,0,2.08284300964557,0.56530794192401,0,0.275118041940067,0.208994966536811,1.55050055501597,1.42306505074684,0.33472061276467,0.805658634218294,0.760272105718513,2.68468263302986,0.367663080345869,0,5.09008451219255,7.85852804191594,6.30624290706604,0,1.89853131913626,1.64881569537367,0,0,3.92484646928281,0,0.12663051166458,0.132409180813219,0,0,0,1.06748995729705,1.72667283892012,1.24484414159907,1.61652806483626,1.47115712802113,3.32986340818849,0,2.81185718200556,6.24320153660641,0.570471821544449,1.19558944441441,9.98193238472001,4.37056949793955,4.9157782345787,2.04154171254893,9.70391106762967,1.13658359293342,0,0.247266929278557,3.64064544775211,4.31170885089743,1.5150250255866,7.50711119231785,1.38532057742091,0.438977620880838,0.30648779579902,0.150238058906597,0.340296549480063,0.358779271377724,0.213557388818567,0,0,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0,0.0920498986422993,0,0,0.10075209822764,0,0.966304265816484,1.36373060295417,3.15485054927904,22.6871093401047,23.8553582978673,18.9396126877315,13.4759371519982,20.1856680700503,16.4239811584123,1.56449532329816,1.28648187638577,0,0.464367928031979,0.721879481669586,4.8505788016336,3.54027849164014,5.54325368732009,5.29411069115491,4.13970943775572,5.21995362044413,5.66291494272691,5.29797955838434,3.8474715694639,2.95262181849859,2.80483547606892,3.2925920906512,8.82052268313252,0,0,1.18157981336281,1.32438929824395,14.1436704324581,10.9803398591056,3.84125998930189,3.37205259772859,4.62433273093502,5.74048359982883,0.325808305310325,1.03993478527958,17.3197610430328,12.5204837373083,5.4007999348478,1.87676382089396,1.38895653772983,0.951270761172991,11.0628615714299,17.1697232418975,0.738651018262192,0,0.891786973732369,0.93733833986777,1.51183915378974,0.850650583454319,0.447792613514241,3.48760726216754,3.06706143332169,0,0.088048434013226,0,0.144119953416961,0.12624243342638,2.47641787739459,3.4378958300245,4.68869788840188,6.84289784090821,3.70178973731965,0.600686115687835,1.14330573052231,4.70950554250515,9.15516144549888,2.56684000373325,0.517086863031111,10.7296933755565,0,0.26593811658487,0,3.34369586540785,2.83698264046557,1.8649552531127,6.0050757336422,0.542621605391443,0.823240336780769,0.325736184293735,4.26470338491055,0.791951872933429,0.301439377059586,0,0.599837947092342,1.2162378064119,1.00451418286425,0,0.239624855491583,2.29723871668228,1.42636905040718,0.144781306667579,0.205476322550383,0.179060963239896,0.112085143993527,1.18218456121156,0.431255149719035,0.513372145118994,2.54094624222463,7.8083912314573,8.50617694055465,4.52293916402742,7.01732626818479,0,0,0,1.71768088406796,3.00102312635806,3.7977103317963,0.623912584592421,0.356857977594324,2.05013139544115,1.99140405487612,0.902838299183157,0,1.03473071292505,0,0.737476674166813,3.64911180765948,13.7060810223918,4.46086450954113,1.24060815673732,0.862856803274467,1.70764092485511,0,6.65741758041988,2.72151263996712,0,0.306923946576125,0.561320188866147,0.256278298511402,0.511707249066704,0,0,0.616838775210622,0.887808626565635,0.0821271560138091,0,0,13.0528205558952,2.00506470303285,1.65745780084613,0,0.546273504020151,1.04899531967539,37.9007674842226,27.0323833236496,60.3949322266179,20.4594914514565,21.4269806652538,2.27466768141793,2.55140557914773,0,4.62681758070868,9.7540717515787,25.0844886927427,28.0363900349542,14.959368160717,21.4919764533291,0.219259876645935,0.522870902049801,30.2611147637339,25.2571277188773,6.18218949862176,3.29731237272711,2.7470839445503,4.70304149547352,1.14853107599234,5.85054221432869,1.6068392984416,1.16004861950546,7.54838223861757,10.1312425319246,3.03240459465967,6.76747542670124,8.99103502268217,8.35220948677789,2.22580089116843,1.32227932288782,1.72971060628596,7.52915003718046,1.92199783625545,0,0,0,0,0,0,0.74129687641568,0,7.07100901783368,3.79655309662471,0.953150969619124,12.7948895655667,0.855877976067841,0.95460974377781,0,4.31693898199955,3.84351841630477,6.9509317383955,0.404364963146632,0,0,11.7032097381502,0.243713489631284,0,0.818999468447914,0.141405431953713,0,0,0.66343897524122,0,10.4179596168004,6.55894752046633,0,0.30982349809975,0,1.43411352204052,1.96498082026242,0,2.48332744849418,1.05553817648832,0.329294892959902,10.62524886544,11.5478457680844,3.65644028356946,12.0654409596442,5.44454924306613,1.97701981631236,6.02707521739722,11.7930032967338,9.75546337780687,5.51336160496703,1.01489521846434,1.52927441428475,1.13929437434833,3.33524485640905,2.46817363851717,0.648473311192717,0,3.17250070517708,15.7031384557386,7.69983884210687,5.88096518354476,2.04383492638291,3.17392268548179,0.426851060090485,4.46393563640703,45.5040966866822,0.191505370132367,2.32840940996271,23.0481577594934,18.8134109336017,10.2705605564937,43.7136909206735,42.6078611053114,6.43308755646092,0,19.1709721831495,30.6609291137035,7.21361223987106,0,0.447352215784832,0.166849141711909,15.0448833459571,44.823393997134,0,0,0.33307196799782,21.1480507631774,27.5096594400083,8.79049075631364,40.413053742588,7.68959351514601,0.568272293612826,1.67121139316383,1.48482340416319,0.921482106297696,0.994147647766298,4.64209074154692,0,23.4021501401999,4.01138275443188,1.59398390600856,4.97311047956066,16.1236958626737,4.80662807760128,16.2471943208612,0,29.9261609320598,5.54965641494388,0,0.789147245095469,0,0,3.87733098438087,3.71072392647405,13.9729658600836,9.11497163798316,14.5183599993685,23.1999864139134,6.71381344884448,11.4414142631745,3.54581522651905,34.4743373241465,42.8658781673384,4.68787486319889,6.20018970069687,5.18564686089254,9.15490417902499,12.8271941520221,10.9352619012813,3.51016635446356,3.48603083260768,2.23077990845765,1.76985594558733,0.113942055847001,14.5255259764478,8.25770328569904,7.49666866261856,3.82801391678303,1.00757352742049,5.33034776018635,8.17546385565892,19.7795123057731,7.64573736740719,75.5745463067555,83.7187021536748,84.4142582488489,59.0134108772216,50.0650223788193,25.7417638724193,11.5895293792995,10.0360680718098,41.5466188304815,18.9099766904916,6.28048707973708,5.49927130440263,5.63390144493182,11.1207545051853,12.5306339406546,5.79649743633823,34.5108388338479,3.74823113160543,15.6911118725473,8.80490785194404,15.0523835311138,9.47002566838537,2.41981432097328,5.20323694771833,0.189559738885464,1.50323419414493,6.63604424942382,5.98188485436467,4.30289542638149,6.90652420495896,13.1419672750255,11.3843818411917,0,14.4054582818159,2.25382514053069,12.8847625738996,6.63961339319714,2.75177651954586,13.1588610553156,12.3520945875654,12.563664929141,2.13375836274523,7.06049013532002,2.71176888936639,0.411125773940253,2.78200456384186,7.40736312683781,7.62650392665732,20.119863883135,6.83049583165928,3.39676336289621,17.1467596413386,32.642929907286,9.95250987599394,4.46569873763264,26.4657900754371,4.00679858848552,0,0,0.611989305817931,0,2.40168115483916,4.38097212454378,15.3295905680367,0.429765441419957,8.67528269121738,7.26134243307861,6.18733144831546,3.58936512288407,12.5797770314364,8.15529491459485,10.0427155848843,14.98191436454,0,31.4539063724125,0.236349546921671,0.247247575143499,0.741438982396034,4.4292366681637,25.0633062914722,4.77137813885582,5.99294986890933,27.0065289421232,26.5451112632661,24.0955396056927,0,0,8.44418837546543,0.335434687599266,4.96475955984948,10.7531905676746,11.7216373536541,7.35078091264664,7.10086230081948,10.7204298956005,11.9176554665778,33.8177155080817,0,0,0,0,26.7621617642845,0.340776043570843,3.73929902016415,0.732761168390412,6.62534444561107,10.342636508924,8.06618870630409,15.7399890853583,11.9818553793834,6.51403216662938,4.55892484789031,4.14239055347196,0.496166021811951,13.2399793371623,3.0448149595224,9.57511886655273,2.1760712134779,4.0110383043632,1.83807346058077,1.31149052283922,14.4489768550216,7.08854543973589,5.61320818549031,5.75878281249899,8.027728739661,11.4256923082958,12.6055697971008,50.7739490215967,1.99968652739371,3.7912279385412,1.14186133417987,1.17632909849086,10.7717028335583,5.21715702998971,0,0.467426619694449,0.554805861502613,2.08343305802598,1.0062716070103,0.889811221596536,0,0.302461847526478,0.777186002913902,0,0.159296767163702,0,0.310525913752519,0,0,0.521745061811734,0.150257608997218,0,0,0,0.644463342254931,0.464033759878494,0,0,0.686791410365586,0,0,6.93431389466292,1.07220795687463,0.782982875895635,0,0.463044948647668,1.22368352253234,1.25362188757041,2.16161013012681,2.41212454536578,1.41351316756705,0.578742114812744,2.19625172848994,5.89355492752277,8.29032820154877,0,7.74247242449692,0.974301544196942,1.32864840313363,1.79921933681429,0.327609848846413,11.7970996201785,6.33936370075881,2.59983614611409,8.00187972706057,0,0,0,2.09819261579167,1.24415452006595,12.6615427590615,5.06776613564405,44.5062615452187,17.1459131961462,46.846178267311,15.9431190076262,22.4323733308794,29.6081806525819,0.636008701306837,9.22682416514664,11.2079904759966,0,0,6.61561018493533,4.25089728976755,7.18352365757181,4.71767637753736,8.3183659753167,9.40538633513363,6.45902582527404,0,9.12773782059538,16.6337309920314,6.9702867438238,11.8991436134848,0,4.8325194824207,48.9333906406036,1.72983755203292,7.0596774046232,10.9411961572633,4.45241380618418,3.60298218522213,9.4627895178909,8.10451015420736,4.68646859168308,6.20060389503552,7.67331303346273,10.3925213713462,7.67560873600055,24.3143477410754,13.89382830441,8.81560750713207,2.67850917939143,2.01770233331294,7.89055285507621,10.4724608021597,2.21755925406597,13.0214405938031,0,10.6712480773626,7.89273282754189,22.1022482453021,9.56590056271795,4.4741062924793,5.34193005714407,12.8925195124343,7.30526976407596,0.647782773655864,6.21077194253165,5.0748346365426,33.1828584638726,20.45849086479,94.0573253156955,0,1.65772931330429,1.53646629384555,4.14755797088455,4.73250094702305,1.18332000730565,1.95990830946063,10.1612892045823,9.85159534739415,8.99598518426528,1.91107787795487,14.9886278609042,9.8150233615243,22.3109802717553,25.2497246503279,15.0914326078683,13.9177731760584,3.39997695141398,10.5272758557948,22.4814375932346,3.32976254177192,10.3910395475843,58.2684738750774,21.8896123171677,6.17393264863557,4.5897507705831,1.41095188908457,0.735444965261716,10.3697680724715,4.3187862765288,5.04978880556046,5.0718687310008,0,2.91350145737546,2.70723129489024,8.2951159417691,7.85637329864893,2.11736923029415,1.92579280054004,2.19100916473955,9.17458566809082,4.44352707769499,21.2991608960799,7.95500435233702,3.9271562130634,6.87734892670021,0,0.462175628631418,1.29787968637137,12.8689753331781,9.94316704869629,30.0275447397106,13.7684920151675,10.4214788053569,8.91380525487996,3.0084904715085,0.833565680400634,0.267964130156178,7.46252495512901,3.93045384275202,26.0145457919197,10.9509638473321,2.64814530327625,4.40730471500591,3.81248332774086,6.173774352982,4.85081253499726,21.1185245460053,30.1165304955047,4.17582728690443,4.08816570738255,4.65724499164419,5.61682553415724,27.2154731988174,0,11.7671014759629,11.7320471201727,1.71138021856013,1.62758471326295,3.32878387092756,2.61655931668334,10.2581917537035 | |||
|short_description=p1@SLC29A2 | |||
}} |
Revision as of 08:51, 11 January 2014
Short description: | p1@SLC29A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC29A2_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_ENST00000357440, ENST00000540386, NM_001532, uc001oht.2_5end |
EntrezGene: | SLC29A2 |
HGNC: | 11004 |
UniProt: | Q14542Q96FB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.37e-11 | 253 |
kidney tubule cell | 5.64e-07 | 10 |
nephron tubule epithelial cell | 5.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 2.50e-11 | 223 |
neurectoderm | 1.10e-10 | 86 |
trunk region element | 3.64e-09 | 101 |
neural plate | 3.67e-09 | 82 |
presumptive neural plate | 3.67e-09 | 82 |
ectoderm-derived structure | 8.24e-09 | 171 |
ectoderm | 8.24e-09 | 171 |
presumptive ectoderm | 8.24e-09 | 171 |
nervous system | 3.29e-08 | 89 |
pre-chordal neural plate | 7.79e-08 | 61 |
neural tube | 8.04e-08 | 56 |
neural rod | 8.04e-08 | 56 |
future spinal cord | 8.04e-08 | 56 |
neural keel | 8.04e-08 | 56 |
central nervous system | 8.77e-08 | 81 |
regional part of nervous system | 1.17e-07 | 53 |
regional part of brain | 1.17e-07 | 53 |
ecto-epithelium | 2.84e-07 | 104 |
adult organism | 3.76e-07 | 114 |
nephron tubule epithelium | 5.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.45e-17 | 143 |
carcinoma | 7.53e-17 | 106 |
cancer | 2.62e-15 | 235 |
disease of cellular proliferation | 4.19e-14 | 239 |
adenocarcinoma | 3.27e-09 | 25 |
organ system cancer | 3.37e-07 | 137 |
germ cell and embryonal cancer | 6.64e-07 | 22 |
germ cell cancer | 6.64e-07 | 22 |