FFCP PHASE1:Hg19::chr10:18629628..18629672,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=783 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1402 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000377329,ENST00000498816_5end | |||
|coexpression_cluster_id=C56 | |||
|description=CAGE_peak_4_at_CACNB2_5end | |||
|id=chr10:18629628..18629672,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004140;8.62e-12;1!UBERON:0010227;1.31e-11;1!UBERON:0010226;1.97e-11;1!UBERON:0000358;2.42e-11;1!UBERON:0005062;2.55e-11;4!UBERON:0007284;2.55e-11;4!UBERON:0009143;4.22e-11;1 | |||
|ontology_enrichment_disease=DOID:114!9.09e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:114;2.08e-21;2!DOID:178;1.60e-11;1!DOID:326;1.60e-11;1!DOID:3978;1.60e-11;1!DOID:3394;1.60e-11;1!DOID:5844;1.60e-11;1!DOID:1287;3.46e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,2.08e-21,2;DOID:178,1.60e-11,1;DOID:326,1.60e-11,1;DOID:3978,1.60e-11,1;DOID:3394,1.60e-11,1;DOID:5844,1.60e-11,1;DOID:1287,3.46e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.09e-54!115;UBERON:0001049!8.87e-30!57;UBERON:0005068!8.87e-30!57;UBERON:0006241!8.87e-30!57;UBERON:0007135!8.87e-30!57;UBERON:0002616!3.35e-26!59;UBERON:0002346!2.75e-25!90;UBERON:0003075!2.86e-25!86;UBERON:0007284!2.86e-25!86;UBERON:0003080!1.63e-23!42;UBERON:0005743!7.05e-23!86;UBERON:0001017!8.45e-23!82;UBERON:0000955!1.24e-22!69;UBERON:0006238!1.24e-22!69;UBERON:0002780!9.05e-22!41;UBERON:0001890!9.05e-22!41;UBERON:0006240!9.05e-22!41;UBERON:0000073!6.94e-20!94;UBERON:0001016!6.94e-20!94;UBERON:0000153!6.27e-19!129;UBERON:0007811!6.27e-19!129;UBERON:0001893!3.67e-17!34;UBERON:0000033!1.44e-16!123;UBERON:0003056!7.35e-16!61;UBERON:0002791!1.49e-15!33;UBERON:0002020!5.55e-15!34;UBERON:0003528!5.55e-15!34;UBERON:0002298!9.29e-15!8;UBERON:0001869!2.16e-14!32;UBERON:0000924!1.78e-13!173;UBERON:0006601!1.78e-13!173;UBERON:0004121!3.60e-13!169;UBERON:0002619!2.22e-12!22;UBERON:0000025!2.51e-11!194;UBERON:0000956!1.23e-10!25;UBERON:0000203!1.23e-10!25;UBERON:0004111!1.99e-10!241;UBERON:0001950!2.23e-09!20;UBERON:0000477!9.94e-09!286;UBERON:0001896!1.26e-08!3;UBERON:0005290!1.26e-08!3;UBERON:0010096!1.26e-08!3;UBERON:0000349!7.18e-08!5;UBERON:0003076!1.86e-07!15;UBERON:0003057!1.86e-07!15;UBERON:0000475!4.89e-07!365;UBERON:0004733!4.92e-07!12;UBERON:0002028!4.92e-07!12;UBERON:0007277!4.92e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.13e-25;25!UBERON:0003978;8.76e-15;3!UBERON:0000946;8.76e-15;3!UBERON:0004151;1.62e-14;3!UBERON:0002146;9.57e-12;1!UBERON:0005623;9.57e-12;1!UBERON:0002135;1.06e-11;1!UBERON:0002079;1.31e-11;1!UBERON:0000948;1.38e-11;22!UBERON:0002084;1.97e-11;1!UBERON:0002082;1.97e-11;1!UBERON:0003296;7.91e-11;4!UBERON:0010133;7.91e-11;4!UBERON:0003103;9.46e-07;61 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,2.69e-23,27;UBERON:0007023,2.20e-17,114;UBERON:0003978,8.77e-15,3;UBERON:0009751,8.77e-15,3;UBERON:0000946,8.77e-15,3;UBERON:0002523,8.77e-15,3;UBERON:0005983,8.77e-15,3;UBERON:0002165,8.77e-15,3;UBERON:0002062,8.77e-15,3;UBERON:0007280,8.77e-15,3;UBERON:0004151,1.62e-14,3;UBERON:0002146,9.57e-12,1;UBERON:0005623,9.57e-12,1;UBERON:0002135,1.06e-11,1;UBERON:0002079,1.31e-11,1;UBERON:0002084,1.97e-11,1;UBERON:0002082,1.97e-11,1;UBERON:0010226,1.97e-11,1;UBERON:0003103,6.03e-11,68;UBERON:0003296,8.53e-11,4;UBERON:0010133,8.53e-11,4;UBERON:0000948,1.31e-10,24;UBERON:0005498,1.31e-10,24;UBERON:0004140,1.31e-10,24;UBERON:0009881,1.31e-10,24;UBERON:0004141,1.31e-10,24;UBERON:0003084,1.31e-10,24;UBERON:0007005,1.31e-10,24;UBERON:0004139,1.31e-10,24;UBERON:0004291,1.31e-10,24;UBERON:0010314,1.92e-07,132;UBERON:0004797,7.90e-07,7 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,1.44999915086959,0,0,0,0,0.291604613383254,0,0,0.120596438625408,0,0.331737779793674,0,1.53569778007781,0.21787692703798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0.468528891450678,0,0,0,0,1.20990716048664,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,1.55182426381471,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,24.5768513119584,35.9781865698343,0,9.38491302345258,15.4521377329166,12.4976016167449,107.359189033789,0,0,0,0,0,0,0.169346664131569,1.59045937961861,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0.788057072991982,0.629455057619977,0,0,0,13.579211201094,5.95882773328889,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,6.13096789888697,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0,0.573409195690071,1.10929051536852,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.504143392443436,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0.810451015420736,0,0,0.317079050969534,0,0,0,0,0,2.14280734351315,0,1.21393120847326,0.227662191351298,0,0,0,0.475788130837822,0.197318320688547,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0.17071847709395,0,1.29068207646083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,2.113278637917,0,0,0,0,0,0,0,0,0.917458566809082,0.143339583151451,0,0.0679914901909147,0.872701380680755,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0.639701945702943,0.23806443146374,0,0.248298857183432,0,0.0636471582781649,0,0,0,0.471464371102113,0.143444410785353,0.332660356546013,0,0,0,0,2.34640942403454,0.122241444182866,0,0,0.201273793591026,0 | |||
|short_description=p4@CACNB2 | |||
}} |
Revision as of 02:01, 11 January 2014
Short description: | p4@CACNB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CACNB2_5end |
Coexpression cluster: | C56_heart_left_umbilical_skeletal_penis_diaphragm_tongue |
Association with transcript: | 0bp_to_ENST00000377329, ENST00000498816_5end |
EntrezGene: | CACNB2 |
HGNC: | 1402 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 2.69e-23 | 27 |
adult organism | 2.20e-17 | 114 |
valve | 8.77e-15 | 3 |
cardiac mesenchyme | 8.77e-15 | 3 |
cardial valve | 8.77e-15 | 3 |
tunica intima | 8.77e-15 | 3 |
heart layer | 8.77e-15 | 3 |
endocardium | 8.77e-15 | 3 |
endocardial cushion | 8.77e-15 | 3 |
presumptive endocardium | 8.77e-15 | 3 |
cardiac chamber | 1.62e-14 | 3 |
pulmonary valve | 9.57e-12 | 1 |
semi-lunar valve | 9.57e-12 | 1 |
mitral valve | 1.06e-11 | 1 |
left cardiac atrium | 1.31e-11 | 1 |
heart left ventricle | 1.97e-11 | 1 |
cardiac ventricle | 1.97e-11 | 1 |
future cardiac ventricle | 1.97e-11 | 1 |
compound organ | 6.03e-11 | 68 |
gland of diencephalon | 8.53e-11 | 4 |
neuroendocrine gland | 8.53e-11 | 4 |
heart | 1.31e-10 | 24 |
primitive heart tube | 1.31e-10 | 24 |
primary heart field | 1.31e-10 | 24 |
anterior lateral plate mesoderm | 1.31e-10 | 24 |
heart tube | 1.31e-10 | 24 |
heart primordium | 1.31e-10 | 24 |
cardiac mesoderm | 1.31e-10 | 24 |
cardiogenic plate | 1.31e-10 | 24 |
heart rudiment | 1.31e-10 | 24 |
structure with developmental contribution from neural crest | 1.92e-07 | 132 |
blood vessel layer | 7.90e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.08e-21 | 2 |
vascular disease | 1.60e-11 | 1 |
ischemia | 1.60e-11 | 1 |
extrinsic cardiomyopathy | 1.60e-11 | 1 |
myocardial ischemia | 1.60e-11 | 1 |
myocardial infarction | 1.60e-11 | 1 |
cardiovascular system disease | 3.46e-11 | 4 |