FFCP PHASE1:Hg19::chr10:13390222..13390246,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22929 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19685 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T5U9,D6PSQ9 | |||
|association_with_transcript=33bp_to_ENST00000378614,ENST00000545675,uc001imk.2,uc009xje.2,uc010qbt.1_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_SEPHS1_5end | |||
|id=chr10:13390222..13390246,- | |||
|ontology_enrichment_celltype=CL:0000066!7.54e-19!254;CL:0002321!2.84e-11!248;CL:0000220!1.38e-10!246;CL:0000076!5.98e-07!62 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.68e-18,253;CL:0002321,4.60e-11,250;CL:0000076,7.20e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.18e-27!235;DOID:14566!1.13e-25!239;DOID:0050687!1.44e-16!143;DOID:305!9.07e-14!106;DOID:0050686!3.83e-09!137;DOID:2531!7.23e-08!51;DOID:0060083!7.23e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.50e-27,235;DOID:14566,1.19e-25,239;DOID:0050687,1.36e-16,143;DOID:305,1.31e-13,106;DOID:0050686,4.65e-09,137;DOID:2531,4.46e-08,51;DOID:0060083,4.46e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0005172!3.71e-10!55;UBERON:0005173!3.71e-10!55;UBERON:0005177!4.37e-09!107;UBERON:0001007!1.43e-08!155;UBERON:0001555!1.43e-08!155;UBERON:0007026!1.43e-08!155;UBERON:0002417!1.59e-08!61;UBERON:0000916!1.59e-08!61;UBERON:0003104!4.93e-08!238;UBERON:0009142!4.93e-08!238;UBERON:0009569!1.22e-07!113;UBERON:0004119!1.35e-07!169;UBERON:0000925!1.35e-07!169;UBERON:0006595!1.35e-07!169;UBERON:0004921!3.07e-07!129;UBERON:0004185!3.07e-07!129;UBERON:0000077!5.09e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0005172;8.34e-07;52!UBERON:0005173;8.34e-07;52!UBERON:0002113;8.49e-07;24!UBERON:0011143;8.49e-07;24!UBERON:0000353;9.15e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,3.87e-10,54;UBERON:0005173,3.87e-10,54;UBERON:0005177,2.01e-09,101;UBERON:0001007,2.22e-09,145;UBERON:0001555,2.22e-09,145;UBERON:0007026,2.22e-09,145;UBERON:0004119,1.93e-08,160;UBERON:0000925,1.93e-08,160;UBERON:0006595,1.93e-08,160;UBERON:0002417,2.28e-08,60;UBERON:0000916,2.28e-08,60;UBERON:0004921,1.18e-07,118;UBERON:0009569,3.53e-07,112;UBERON:0000353,6.20e-07,15 | |||
|phase1_expression=1.45342703416445,0.856402095563933,1.12763523276777,3.00219895059391,0.893922188854576,0,5.06599756336621,1.26343974685366,1.04474251279935,3.93174298402414,6.97801167972428,2.18441372130172,3.16520373874144,0.618831764800233,1.65698687863958,0,0,0,1.46379839637152,2.58554221961255,4.08001382488506,6.89600387251793,3.43483184557268,9.03371205481036,8.66244213204139,3.82067028739756,3.61242593579761,4.01424984699764,0,0.767658796194425,0.154816123316076,0.919421224478927,4.51808878167375,0.739508020333575,5.81004004352262,8.67232318173271,3.22960483268332,0.553995408531877,0.802177789880567,0.651032612147555,1.56740831967947,0.647787332037959,0.257575567634187,0.581592955118259,0.755751887377619,0.485168122375632,0,0,0,0.28769239232215,0,0,0,0.645484683583826,1.35426486594342,0.564727018627814,0.545812300115692,0,0,0,0,0,0.199463657621632,0.852449501065388,0.580418477257168,0,0,0.251248665256743,0.521482918420201,0.217188844705117,0.605399502633369,0,0,0.211255286311942,0.425208599930087,0,0.336985893439485,0,0.32145117339416,0.285012743741249,0,0.182664153764634,1.75996244461323,0,0,1.28019066769952,0.400395987036012,0,1.98313461835459,0.954053754535364,0,0.587237189370939,0.764546456250458,1.32171328579026,0.560508562981536,2.63384084775077,1.96709770113833,1.17903228824749,2.05601498999509,0.334372990781356,1.30368906653436,0.473447805734733,0,1.11410456885174,0.883817722424512,0.664601683750863,0.270803863765016,2.68991771423918,0.910415432919148,2.13769275984779,2.48715016007264,0.579606171470105,0.741432815810302,0,0,1.92625882585863,0,1.03088233644789,0.253019692019503,0.637130828648193,1.30216690771284,0,0.451725357233318,0.639933055772092,0,0.947109008176067,0,0.403213486449465,0.534880391567015,1.73789284659359,0,1.34140171940727,6.64885321586358,3.2529523714611,2.00535164254356,1.59331170856906,1.5905718941022,3.89307896242109,4.63220604103932,3.76939975686359,6.93894806975696,3.27447688744282,3.27865759463288,1.85392221392215,8.11368484136708,6.44280028007289,11.833258486179,3.10037811596945,4.57595928624102,2.97166001063652,2.58391129576717,3.4409383804245,4.51282652089873,3.95715559346807,3.77549492588915,6.05259692268148,6.47884396264113,2.32575083252396,3.20189636418039,1.00416183829401,1.61131726843659,3.04108842287405,4.39311703586705,2.20597848207521,0.81014194788176,5.09008451219255,4.4905874525234,7.31974623141594,1.53316637465883,3.79706263827252,6.59526278149466,0,0,2.61656431285521,1.49091585508596,6.20489507156441,0.264818361626438,1.43418310374407,3.90135220418193,5.60677600142307,4.2699598291882,4.19334832309172,1.8672662123986,4.04132016209064,2.94231425604226,1.36221684880438,1.15235184896,6.09235722767871,1.87296046098192,2.2818872861778,1.64393548606981,5.40198693761318,3.0755859429945,2.80901613404497,3.0623125688234,6.5102188175237,3.82305390350332,0,4.94533858557114,0,3.59309070908119,7.23845290002485,11.7611408679646,3.60183350129438,4.38977620880838,3.98434134538726,3.00476117813194,7.14622753908133,1.61450672119976,0,1.48352330811693,0.300091096084402,0.92747276314595,1.28820270022815,0.558350568994769,3.03797398034279,2.14361411354637,0.757301322732344,1.28869858099219,1.2931684545505,0,1.81353776809752,4.23901480776219,2.31913023795956,0.545492241181669,1.72082757233402,131.365681501574,72.2287237352095,123.978937041776,79.197046031743,107.993324174769,20.0737547491706,1.56449532329816,2.57296375277154,4.14404764057442,0.928735856063958,2.88751792667834,4.8505788016336,4.38320194203064,4.57920956778616,4.08087699109858,4.79334777003293,5.21995362044413,4.58426447744559,4.12065076763227,3.07797725557112,8.85786545549578,7.01208869017229,4.9388881359768,13.2307840246988,2.53510069643662,6.87979051674338,7.68026878685825,4.85609409356116,4.79654910318143,3.77449182656756,1.53650399572076,2.24803506515239,3.01586917234893,1.48141512253647,2.93227474779292,9.35941306751621,2.88662684050547,2.66639931442677,2.46558257895225,1.44366447761074,2.77791307545966,1.90254152234598,11.8530659693891,4.29243081047436,0.984868024349589,1.17002132569619,1.63494278517601,0,0.335964256397719,0.992425680696705,1.61205340865127,1.74380363108377,4.98397482914775,0,1.23267807618516,0.829312462163088,0.144119953416961,0.88369703398466,1.8414389344729,1.52795370223311,1.17217447210047,5.13217338068116,2.15937734676979,2.10240140490742,1.14330573052231,2.01835951821649,2.61576041299968,4.400297149257,0.517086863031111,0,1.690605505112,0.531876233169741,0,6.68739173081569,17.0218958427934,7.45982101245078,1.42977993658148,0.542621605391443,13.1718453884923,1.30294473717494,2.84313558994037,11.087326221068,1.80863626235752,1.74306691720059,3.79897366491817,1.2162378064119,0.502257091432126,0,2.15662369942424,0,0,1.59259437334337,2.05476322550383,2.68591444859843,3.47463946379935,0.788123040807709,1.07813787429759,1.41177339907723,3.04913549066956,3.90419561572865,2.31986643833309,3.85287410269002,3.18969375826582,0,0,0,0.736148950314839,2.00068208423871,1.62759014219841,2.07970861530807,5.35286966391485,2.68094105557689,1.99140405487612,1.80567659836631,0,1.03473071292505,5.31380478828349,9.58719676416856,2.08520674723399,0.979005787313703,1.37257369524342,0.413536052245775,0.647142602455851,0.533637789017222,1.5156378572313,0,4.5358543999452,0.496215615637554,0.153461973288062,3.08726103876381,1.28139149255701,2.04682899626681,1.44768529029247,0,1.54209693802656,3.72879623157567,2.87445046048332,0.519254429183621,1.74315567689939,8.33930202182193,2.80709058424599,3.68323955743585,5.0518357192427,3.82391452814106,2.09799063935079,6.31679458070376,2.92658280996776,7.84349769176855,2.92278449306521,3.37765212457202,6.8240030442538,4.76262374774244,8.2048048118813,10.7959076883203,4.87703587578935,6.52196706011309,4.58777291481069,7.47968408035852,12.9847357738863,0.219259876645935,0.261435451024901,7.94995387860806,1.96808787419823,1.30151357865721,2.57602529119306,6.04358467801066,4.45551299571175,4.59412430396938,1.30012049207304,6.42735719376638,2.80345083047154,3.85121542786611,6.14014698904518,3.99726060205139,2.79292636657511,4.64053420525531,7.67039646744908,2.58192903375538,2.14870389969272,2.88285101047659,0.510450849978337,3.6416801107998,0.929691098594572,0.94443704049192,1.3940745403212,0.308033580176089,1.59691809095107,1.73986598415015,3.33583594387056,2.71937284809783,2.97726695487734,2.84741482246853,2.85945290885737,3.83846686967001,2.99557291623744,0.318203247925937,3.92474320099615,2.33834194858309,3.84351841630477,5.89062011728432,3.23491970517306,3.17020642346017,0.842516912477962,6.33923860816467,0.974853958525138,0,1.36499911407986,2.54529777516683,1.13008116620243,2.2054613741845,1.99031692572366,0.438450885253763,1.15755106853338,3.27947376023316,1.62328301570163,4.957175969596,5.63391205064483,4.15892921391749,1.27723753317057,4.280052617775,1.77380532035299,1.05553817648832,0.658589785919804,8.72788299661145,10.4980416073495,1.82822014178473,5.3624182042863,1.08890984861323,2.82431402330337,1.29151611801369,0,2.21715076768338,1.60806380144872,0,0,1.13929437434833,0.476463550915578,0.822724546172388,0,0,0,10.5755830416198,12.5122381184237,18.3780161985774,8.54694605578306,5.4822300931049,10.1732835988232,17.6963162728993,8.3823336001783,1.7235483311913,6.1385338989926,5.19395104439289,1.96558024679421,4.33645890163065,3.44695770700651,0,2.70866844482565,6.26293492904428,8.475587702024,2.55507742614196,2.06103206853459,4.30137070031841,2.68411329470899,2.16903884225481,5.08009048045305,3.34087408674291,2.46174797895425,2.43410110628385,3.3307196799782,8.45922030527097,2.8071081061233,0.73254089635947,4.73306034823102,1.78309414843965,11.6495820190629,1.43246690842614,2.37571744666111,0.307160702099232,0,0.984685914873589,3.22795244566427,13.678721560821,8.23389091699175,2.59022384726391,0.552567831062295,0.755798243562828,0.613612095012929,4.92339221844278,0.311039587661807,3.41499734359842,6.44476228832193,6.13886844272246,1.38100767891707,0,3.33410970433911,0.969332746095218,1.02044907978036,1.99613798001194,18.4903710370516,2.53633999988968,5.79999660347835,7.51036758684298,2.2882828526349,8.27356886187777,4.13692047889758,4.66567381413207,4.34062487333231,0.885741385813839,0.60298219312704,1.52581736317083,0.663475559587348,1.47773809476774,1.53569778007781,4.35753854075961,1.81250867562184,1.69290568708354,5.01345045726805,1.84451123510448,3.14151755434202,5.64966333994442,1.27600463892768,1.74035427463538,1.06606955203727,9.19739683761629,7.22109179417114,2.82559859230266,2.25595660617181,1.76456280885966,1.51039428278258,1.89753732724185,2.2251121057253,1.26598838716816,1.30586246527318,3.8165329287164,3.46221823587346,3.98104772431402,1.50377859655677,4.888241159469,2.07564790076435,2.71840665682306,3.65476823269094,0.876214728748802,6.42062117839031,0.702793337176017,12.589380455881,0.978323094660449,12.3817993562387,0.789168805698781,4.83962864194656,2.14250933141343,2.0851571277401,2.40517471063188,10.2651309483275,0,2.31694369112849,1.56966459203613,0,3.13070500632772,5.82433626655182,2.95051555169723,3.5277263069176,9.31533510410307,2.27144668714639,3.0957485844891,3.38647159511798,3.50828722013691,4.59846559497972,0.872901148395775,5.29536760149002,2.71176888936639,6.16688660910379,7.94858446811959,0.759729551470544,5.08433595110488,2.48492342779755,1.06726497369676,3.79638258206047,6.62815918908888,3.77970767347522,1.71594997861965,1.1524383839052,5.21860649374817,1.88555227693436,5.30026403687095,2.824276850433,8.15985741090574,4.33425884852278,2.40168115483916,1.77976992559591,2.55493176133945,4.29765441419957,7.09795856554149,0.837847203816763,0.916641696046735,2.87149209830726,3.79390100948083,2.14613024068285,2.67805748930247,1.88113722962834,1.44119953416961,5.82479747637269,7.01170322534291,7.33501139592381,5.45968705218898,6.49621377997342,22.4384329974329,1.59045937961861,1.0896272488926,114.134735410164,181.414516871751,128.371064451018,0.899895566206002,0.77380195455795,0.546746009922222,2.68347750079413,3.07342258466873,2.93745693555989,1.47840471127169,4.12360880465543,9.59575986597226,1.42939065274673,1.98627591109629,19.0701403241062,1.08599920350743,0.864221491201268,1.63293680054705,2.39460383124975,3.28370082997356,4.77086460999181,6.57210130816729,5.71553711344522,6.62534444561107,1.29282956361551,1.05786081394152,4.61934462287689,2.11444506695002,1.49502377594773,0.471612915298998,2.89967338743037,0.992332043623902,10.473416490591,1.33971858218986,3.19170628885091,3.26410682021684,1.7548292581589,1.22538230705385,1.31149052283922,1.25643277000187,0,0,1.1267183763585,0.573409195690071,1.66393577305278,0.807253238237985,5.81064266732169,5.37415754237058,1.66814029295813,0.285465333544967,2.58792401667989,5.1516839638757,2.75349954360568,2.98509605773748,1.16856654923612,2.21922344601045,1.32582103692562,1.25783950876288,0,0.686520205190771,1.36107831386915,3.73049281398673,2.21782724984451,1.75226443880073,0.899606224327209,2.32894435314389,2.07353103920428,1.32920857278997,0.521745061811734,1.80309130796662,2.66563648518157,1.22061219961398,1.09109195521536,2.25562169789226,0.464033759878494,0.398095888698616,2.40016658797892,1.37358282073117,3.70424437642511,3.78554694685953,6.16383457303371,1.71553273099941,14.3546860580866,5.21423628678226,3.00979216620984,6.85262772618109,8.05899784866693,4.63202170741458,7.67494173525475,2.8270263351341,7.52364749256568,4.39250345697989,2.81865670446741,6.90860683462397,3.03859956177382,0.967809053062115,0.194860308839388,0.664324201566815,0.327130788511688,11.138734860778,8.60205180638018,5.28280308396568,5.19967229222818,5.2278947550129,3.44429959321631,1.13503190713367,1.10463570151104,0.419638523158333,0.622077260032973,3.32525365389494,9.16510896871795,3.30258477897382,4.80522408044861,10.0142192672875,2.33832412111851,5.7010451559141,3.35186950783946,2.54403480522735,4.25853423006768,9.60684897942564,12.6963339728646,1.531227386766,0.834979926253974,0,1.59633859057151,1.23069818544453,4.53729053199093,1.03735878696327,1.29180516505481,2.85538840518309,3.92590874004102,4.48284948721413,1.83428598521679,2.77261598760812,7.24625981387618,4.8325194824207,12.9295544375579,1.35378591028663,14.1193548092464,3.90757005616546,3.14288033377707,2.45657876265145,1.47856086217045,0.675375846183947,0.781078098613847,0.206686796501184,0.443910671357348,6.56369770821863,4.38606213485746,0.992422356778588,2.81393990975393,5.23825953322341,2.14280734351315,0,1.82089681270989,0.91064876540519,1.41923792260222,3.45701962667338,6.68803236805932,0.543757863814654,0.920818829879887,4.49136595359079,4.89418168325104,1.80534113556182,0.628462359664008,4.48435461302062,8.21842848458546,3.0229862770607,0.9555033757741,1.50100742770978,5.84650363411088,15.2276267232244,4.86803162447222,0,1.65772931330429,0.85359238546975,1.38251932362818,0.430227358820278,1.30165200803622,1.10777426186905,0.423387050190929,0.9164274741762,1.86123831398592,2.8666168169323,1.00669888618013,4.80936144714691,2.31644057466312,0.647428837187895,1.7452677165562,3.4794432940146,11.1713528403602,8.1878812211737,2.58636007709779,6.89736526509898,4.74373544563632,3.95785860283545,2.41540549706678,0.463044948647668,3.27839340755936,0,1.22574160876953,1.64973582971138,1.76677620403451,1.18818560130834,9.7210817344182,3.73839652313197,1.87967835959707,1.16024198352439,4.79717548439659,2.67830907908486,2.82315897372553,1.5245859670942,2.92134555298607,0.458729283404541,0.716697915757256,4.57537530360235,1.42782129400921,6.10890966476528,2.1161073620616,1.85997509083376,1.84870251452567,1.73050624849516,31.7939390584399,25.5681438395048,16.7242021335097,112.901634524374,51.3057418109876,30.784791344173,51.1443380156445,2.80381183407486,1.33982065078089,0,0.930896962757057,0.639701945702943,6.42773964952099,5.16711278688049,1.61394257169231,9.1948127316103,2.41859201457027,3.84022659020617,2.17716747896961,5.13349951627922,0.673520530145875,1.72133292942423,2.99394320891412,7.32629417498771,5.76327667739664,1.9307228228694,3.32353247794371,2.34640942403454,0.611207220914332,7.73102738799903,1.33151354837103,0.201273793591026,3.52625341533556 | |||
|short_description=p1@SEPHS1 | |||
}} |
Revision as of 01:47, 11 January 2014
Short description: | p1@SEPHS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEPHS1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 33bp_to_ENST00000378614, ENST00000545675, uc001imk.2, uc009xje.2, uc010qbt.1_5end |
EntrezGene: | SEPHS1 |
HGNC: | 19685 |
UniProt: | Q5T5U9D6PSQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.68e-18 | 253 |
embryonic cell | 4.60e-11 | 250 |
squamous epithelial cell | 7.20e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
abdomen element | 3.87e-10 | 54 |
abdominal segment element | 3.87e-10 | 54 |
trunk region element | 2.01e-09 | 101 |
digestive system | 2.22e-09 | 145 |
digestive tract | 2.22e-09 | 145 |
primitive gut | 2.22e-09 | 145 |
endoderm-derived structure | 1.93e-08 | 160 |
endoderm | 1.93e-08 | 160 |
presumptive endoderm | 1.93e-08 | 160 |
abdominal segment of trunk | 2.28e-08 | 60 |
abdomen | 2.28e-08 | 60 |
subdivision of digestive tract | 1.18e-07 | 118 |
subdivision of trunk | 3.53e-07 | 112 |
parenchyma | 6.20e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.50e-27 | 235 |
disease of cellular proliferation | 1.19e-25 | 239 |
cell type cancer | 1.36e-16 | 143 |
carcinoma | 1.31e-13 | 106 |
organ system cancer | 4.65e-09 | 137 |
hematologic cancer | 4.46e-08 | 51 |
immune system cancer | 4.46e-08 | 51 |