FFCP PHASE1:Hg19::chr1:228646579..228646584,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:228646579..228646584,+ | |||
|id=chr1:228646579..228646584,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002127;1.25e-09;1!CL:0000911;1.25e-09;1!CL:0002379;1.25e-09;1!CL:0000814;1.25e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,9.70e-10,1;CL:0000914,9.70e-10,1;CL:0000911,9.70e-10,1;CL:0000814,9.70e-10,1;CL:0002042,9.70e-10,1;CL:0002039,9.70e-10,1;CL:0002040,9.70e-10,1;CL:0002041,9.70e-10,1;CL:0002379,1.91e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.54e-12;3!UBERON:0005425;3.74e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3620;1.25e-09;1!DOID:3565;1.25e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,1.91e-09,1;DOID:3565,1.91e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.88e-12!82;UBERON:0000073!2.90e-12!94;UBERON:0001016!2.90e-12!94;UBERON:0005743!1.72e-11!86;UBERON:0001049!5.75e-11!57;UBERON:0005068!5.75e-11!57;UBERON:0006241!5.75e-11!57;UBERON:0007135!5.75e-11!57;UBERON:0002346!4.03e-09!90;UBERON:0007023!4.57e-09!115;UBERON:0002020!5.24e-09!34;UBERON:0003528!5.24e-09!34;UBERON:0001893!5.54e-09!34;UBERON:0000955!7.06e-09!69;UBERON:0006238!7.06e-09!69;UBERON:0002616!1.28e-08!59;UBERON:0002780!1.49e-08!41;UBERON:0001890!1.49e-08!41;UBERON:0006240!1.49e-08!41;UBERON:0003075!1.50e-08!86;UBERON:0007284!1.50e-08!86;UBERON:0002791!1.70e-08!33;UBERON:0002308!3.16e-08!9;UBERON:0000125!3.16e-08!9;UBERON:0003080!3.96e-08!42;UBERON:0001869!6.28e-08!32;UBERON:0009663!5.08e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0005383;5.26e-12;3!UBERON:0005382;5.26e-12;3!UBERON:0009663;3.18e-11;7!UBERON:0000941;3.74e-10;1!UBERON:0001785;3.74e-10;1!UBERON:0002464;3.74e-10;1!UBERON:0004904;3.74e-10;1!UBERON:0001021;3.74e-10;1!UBERON:0001874;1.25e-09;1!UBERON:0000369;3.16e-09;4!UBERON:0002435;3.16e-09;4!UBERON:0000204;3.16e-09;4!UBERON:0002420;7.63e-09;9!UBERON:0000125;7.63e-09;9!UBERON:0007245;7.63e-09;9!UBERON:0002308;7.63e-09;9!UBERON:0010009;7.63e-09;9!UBERON:0010011;7.63e-09;9!UBERON:0000454;7.63e-09;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,3.99e-12,3;UBERON:0005382,3.99e-12,3;UBERON:0009663,3.54e-11,7;UBERON:0000941,3.74e-10,1;UBERON:0001785,3.74e-10,1;UBERON:0002464,3.74e-10,1;UBERON:0004904,3.74e-10,1;UBERON:0001021,3.74e-10,1;UBERON:0003902,3.74e-10,1;UBERON:0005425,3.74e-10,1;UBERON:0001874,8.91e-10,1;UBERON:0000369,2.57e-09,4;UBERON:0002435,2.57e-09,4;UBERON:0000204,2.57e-09,4;UBERON:0010082,2.57e-09,4;UBERON:0002420,8.30e-09,9;UBERON:0000125,8.30e-09,9;UBERON:0007245,8.30e-09,9;UBERON:0002308,8.30e-09,9;UBERON:0010009,8.30e-09,9;UBERON:0010011,8.30e-09,9;UBERON:0000454,8.30e-09,9;UBERON:0003075,8.41e-07,82;UBERON:0007284,8.41e-07,82;UBERON:0000073,9.35e-07,53;UBERON:0002616,9.35e-07,53 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0.209658645508376,0.336985893439485,0,0,0.285012743741249,0,0.182664153764634,0,0,0,0.426730222566507,0.400395987036012,0.574752439954483,1.32208974556972,0.954053754535364,0,0,0,0,0,0,0,0.786021525498329,0,0.167186495390678,1.30368906653436,0.946895611469467,0,1.11410456885174,0.883817722424512,1.32920336750173,0.270803863765016,0.768547918354051,1.8208308658383,0.986627427622057,0.552700035571697,0.289803085735052,1.4828656316206,0.535081656179426,0,0.566546713487831,0,0.34362744548263,0.253019692019503,0.318565414324097,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0.486634870302636,0.189069634328136,0.221729397462564,0.087834785693126,0.261958150995425,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0.23486899728753,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,1.56449532329816,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.110293972732394,0.217879444092406,0.237270619111097,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0.790204397959275,0,0.492434012174795,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.880484340132261,0.207328115540772,0.720599767084807,0.88369703398466,0.190493682876507,0.763976851116555,0,0,0.102827492703324,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,1.34502172792233,0,0.431255149719035,0.128343036279748,0.508189248444927,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0.0868836144680828,0.391602314925481,0,0.206768026122887,0.215714200818617,0,0,0,0,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.184161977871793,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,1.09629938322967,0.522870902049801,0,0,0,0.206082023295445,0.457847324091717,0.330037999682352,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0,0.330569830721956,0,0.127612712494584,0,0,0,0,0,0.532306030317022,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0.354761064070598,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0.478278818186467,0,0.191505370132367,2.32840940996271,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0.19538809540204,0,0,0.540911356951966,0,0,0,0,0.121360521749513,2.22886768554957,0,0,0,0.307160702099232,0,0.562677665642051,0.556543525114529,0.824019371133798,0.63337622438398,0.19924798825107,0.552567831062295,0,0.102268682502155,0.738508832766417,0,0.179736702294654,0.537063524026827,0,0.197286811273867,0,0,0.969332746095218,0.278304294485554,0,0.260427761085233,0.349839999984783,0,0.1137934482855,0.508507300585533,0.472775363535873,0.344743373241465,0.291604613383254,0,0.885741385813839,1.32656082487949,0,3.53853631779919,1.18219047581419,0.219385397153973,0.544692317594951,0.557694977114413,0.230850775511391,0,0.23056390438806,0,0,1.91400695839152,0,0.533034776018635,0,0.470940769185074,0,0.451191321234361,0.19606253431774,0.335643173951685,0,0.476809736941136,0.210998064528027,0,0.282706142867882,0.432777279484182,0,0.0884575645033392,0.611030144933625,0.593042257361244,0.741383633679017,0.104421949505455,0.539209063845416,0,0.468528891450678,0,0.391329237864179,0.242780379534093,0.394584402849391,0,0,0.189559738885464,2.40517471063188,0.207376382794494,0,0.330991955875499,0.313932918407225,0,0.284609546029793,0,0,0.195984794828755,0.435296032902013,0,0.171986032471617,0.19351266257817,0.0730893170861856,0.410577285266046,0.290967049465258,0,0.451961481561065,0,0.19871461170299,0.696418755514666,0.391102765469606,0.0801588202515337,0,0.19980960958213,0,0,0,0.432164393964449,0,0.235694034616795,0.135904206073614,0,0,0,0.600420288709789,1.09524303113594,0,0,0.262887354279314,0,0.458320848023367,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.953423842781029,0.160753148465019,0.550157746388935,0.415440338029185,0,0.77380195455795,0.607495566580247,0,0,0.104909176269996,0,0.179287339332845,0.575745591958336,0,0,0,0,0,0,1.19730191562487,0.164185041498678,0,0,0,0,0.387848869084652,0.79339561045614,0,0,0.106787412567695,0,0.414239055347196,0,0.197611631897944,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0.610131324509816,0.3755727921195,0,0.332787154610557,0.18628920882415,0.276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| |||
|short_description=p@chr1:228646579..228646584,+ | |||
}} |
Revision as of 00:35, 11 January 2014
Short description: | p@chr1:228646579..228646584, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:228646579..228646584, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 9.70e-10 | 1 |
immature NK T cell | 9.70e-10 | 1 |
effector T cell | 9.70e-10 | 1 |
mature NK T cell | 9.70e-10 | 1 |
immature NK T cell stage IV | 9.70e-10 | 1 |
immature NK T cell stage I | 9.70e-10 | 1 |
immature NK T cell stage II | 9.70e-10 | 1 |
immature NK T cell stage III | 9.70e-10 | 1 |
meningothelial cell | 1.91e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 3.99e-12 | 3 |
dorsal striatum | 3.99e-12 | 3 |
telencephalic nucleus | 3.54e-11 | 7 |
cranial nerve II | 3.74e-10 | 1 |
cranial nerve | 3.74e-10 | 1 |
nerve trunk | 3.74e-10 | 1 |
nerve connecting eye with brain | 3.74e-10 | 1 |
nerve | 3.74e-10 | 1 |
retinal neural layer | 3.74e-10 | 1 |
presumptive neural retina | 3.74e-10 | 1 |
putamen | 8.91e-10 | 1 |
corpus striatum | 2.57e-09 | 4 |
striatum | 2.57e-09 | 4 |
ventral part of telencephalon | 2.57e-09 | 4 |
future corpus striatum | 2.57e-09 | 4 |
basal ganglion | 8.30e-09 | 9 |
neural nucleus | 8.30e-09 | 9 |
nuclear complex of neuraxis | 8.30e-09 | 9 |
nucleus of brain | 8.30e-09 | 9 |
aggregate regional part of brain | 8.30e-09 | 9 |
collection of basal ganglia | 8.30e-09 | 9 |
cerebral subcortex | 8.30e-09 | 9 |
neural plate | 8.41e-07 | 82 |
presumptive neural plate | 8.41e-07 | 82 |
regional part of nervous system | 9.35e-07 | 53 |
regional part of brain | 9.35e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 1.91e-09 | 1 |
meningioma | 1.91e-09 | 1 |