FFCP PHASE1:Hg19::chr1:183208643..183208654,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3918 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=7bp_to_ENST00000461729_5end | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_10_at_LAMC2_5end | |||
|id=chr1:183208643..183208654,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.32e-25!254;CL:0002076!4.64e-25!43;CL:0002368!2.70e-17!13;CL:0000223!1.05e-16!59;CL:0002159!2.03e-14!13;CL:0002166!2.49e-10!3;CL:0002621!1.14e-09!3;CL:0002251!1.22e-09!21;CL:0000240!1.31e-08!6;CL:0000311!1.31e-08!6;CL:0000079!1.31e-08!6;CL:0000237!1.31e-08!6;CL:0000036!1.31e-08!6;CL:0000357!1.31e-08!6;CL:0000114!1.31e-08!6;CL:0002202!4.36e-08!9;CL:0002632!4.36e-08!9;CL:0000244!1.11e-07!4;CL:0000731!1.11e-07!4;CL:0000220!1.69e-07!246;CL:0002327!1.89e-07!4;CL:0002077!2.02e-07!33;CL:0002321!2.28e-07!248;CL:0002536!4.84e-07!2;CL:0000076!7.00e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002159;5.00e-30;14!CL:0000312;1.24e-21;5!CL:0000362;3.46e-21;9!CL:0000240;3.84e-18;6!CL:0000311;3.84e-18;6!CL:0000079;3.84e-18;6!CL:0000237;3.84e-18;6!CL:0002166;5.97e-17;3!CL:0002231;1.00e-16;3!CL:0002368;1.59e-14;13!CL:0002077;1.86e-14;34!CL:0002076;9.56e-13;42!CL:0002327;1.47e-12;4!CL:0000317;2.43e-07;2!CL:1000448;2.43e-07;2!CL:0002308;2.43e-07;2!CL:0002140;2.43e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,5.27e-30,14;CL:0000312,1.28e-21,5;CL:0000362,3.38e-21,9;CL:0000240,3.96e-18,6;CL:0000311,3.96e-18,6;CL:0000079,3.96e-18,6;CL:0000237,3.96e-18,6;CL:0000036,3.96e-18,6;CL:0000357,3.96e-18,6;CL:0000114,3.96e-18,6;CL:0002166,6.74e-17,3;CL:0002231,7.30e-17,3;CL:0002077,2.20e-16,34;CL:0002368,1.96e-14,13;CL:0002076,5.26e-13,42;CL:0002327,1.65e-12,4;CL:0000066,2.11e-11,253;CL:0000223,3.00e-09,58;CL:0000317,2.28e-07,2;CL:1000448,2.28e-07,2;CL:0002308,2.28e-07,2;CL:0002140,2.28e-07,2;CL:0002321,3.10e-07,250;CL:0000221,3.44e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000357;3.84e-18;6!CL:0000114;3.84e-18;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!9.55e-11!169;UBERON:0000925!9.55e-11!169;UBERON:0006595!9.55e-11!169;UBERON:0000365!6.35e-10!5;UBERON:0001949!1.14e-09!3;UBERON:0001004!1.28e-09!72;UBERON:0005911!7.90e-09!82;UBERON:0005910!2.92e-08!6;UBERON:0001708!7.98e-08!4;UBERON:0001704!7.98e-08!4;UBERON:0001911!1.89e-07!4;UBERON:0005333!1.89e-07!4;UBERON:0008425!1.89e-07!4;UBERON:0005311!1.89e-07!4;UBERON:0005153!3.20e-07!37;UBERON:0007196!6.43e-07!14;UBERON:0001558!6.43e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001708;5.89e-13;4!UBERON:0008895;5.89e-13;4!UBERON:0001003;7.82e-13;15!UBERON:0007376;7.82e-13;15!UBERON:0001911;1.47e-12;4!UBERON:0011159;1.50e-10;5!UBERON:0010371;4.46e-09;31!UBERON:0002419;2.43e-07;2!UBERON:0007771;2.43e-07;2!UBERON:0003297;2.43e-07;2!UBERON:0001821;2.43e-07;2!UBERON:0003487;2.43e-07;2!UBERON:0001820;2.43e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,6.44e-13,4;UBERON:0008895,6.44e-13,4;UBERON:0001003,7.71e-13,15;UBERON:0007376,7.71e-13,15;UBERON:0007383,7.71e-13,15;UBERON:0001911,1.65e-12,4;UBERON:0005333,1.65e-12,4;UBERON:0008425,1.65e-12,4;UBERON:0005311,1.65e-12,4;UBERON:0011159,1.61e-10,5;UBERON:0010188,6.51e-09,6;UBERON:0002539,6.51e-09,6;UBERON:0008816,6.51e-09,6;UBERON:0003102,1.31e-08,99;UBERON:0002419,2.28e-07,2;UBERON:0007771,2.28e-07,2;UBERON:0003297,2.28e-07,2;UBERON:0001821,2.28e-07,2;UBERON:0003487,2.28e-07,2;UBERON:0001820,2.28e-07,2;UBERON:0005089,2.28e-07,2;UBERON:0005088,2.28e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,1.90922284413584,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31700342490351,1.1240175325762,2.41269533787914,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,5.71139235876122,2.41017665312057,1.07470227243418,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,5.81468763879526,1.65745780084613,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.85054221432869,0,0,0,0,0,0,0,0,0,1.15699440752685,1.53752053892085,1.02090169995667,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,1.08890984861323,0.0941438007767792,0.86101074534246,0,0.886860307073351,6.20253180558791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.0801588202515337,0,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0,0,0,0,0,0,0,0,0.327543835020193,0.295712172434091,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0.162806537221949,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@LAMC2 | |||
}} |
Revision as of 22:40, 10 January 2014
Short description: | p10@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | 7bp_to_ENST00000461729_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 5.27e-30 | 14 |
keratinocyte | 1.28e-21 | 5 |
epidermal cell | 3.38e-21 | 9 |
stratified squamous epithelial cell | 3.96e-18 | 6 |
keratin accumulating cell | 3.96e-18 | 6 |
stratified epithelial cell | 3.96e-18 | 6 |
keratinizing barrier epithelial cell | 3.96e-18 | 6 |
epithelial fate stem cell | 3.96e-18 | 6 |
stratified epithelial stem cell | 3.96e-18 | 6 |
surface ectodermal cell | 3.96e-18 | 6 |
epithelial cell of Malassez | 6.74e-17 | 3 |
epithelial cell of prostate | 7.30e-17 | 3 |
ecto-epithelial cell | 2.20e-16 | 34 |
respiratory epithelial cell | 1.96e-14 | 13 |
endo-epithelial cell | 5.26e-13 | 42 |
mammary gland epithelial cell | 1.65e-12 | 4 |
epithelial cell | 2.11e-11 | 253 |
endodermal cell | 3.00e-09 | 58 |
sebum secreting cell | 2.28e-07 | 2 |
epithelial cell of sweat gland | 2.28e-07 | 2 |
epithelial cell of skin gland | 2.28e-07 | 2 |
acinar cell of sebaceous gland | 2.28e-07 | 2 |
embryonic cell | 3.10e-07 | 250 |
ectodermal cell | 3.44e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 6.44e-13 | 4 |
splanchnocranium | 6.44e-13 | 4 |
skin epidermis | 7.71e-13 | 15 |
outer epithelium | 7.71e-13 | 15 |
enveloping layer of ectoderm | 7.71e-13 | 15 |
mammary gland | 1.65e-12 | 4 |
mammary bud | 1.65e-12 | 4 |
mammary ridge | 1.65e-12 | 4 |
mammary placode | 1.65e-12 | 4 |
primary subdivision of cranial skeletal system | 1.61e-10 | 5 |
protuberance | 6.51e-09 | 6 |
pharyngeal arch | 6.51e-09 | 6 |
embryonic head | 6.51e-09 | 6 |
surface structure | 1.31e-08 | 99 |
skin gland | 2.28e-07 | 2 |
epidermis gland | 2.28e-07 | 2 |
gland of integumental system | 2.28e-07 | 2 |
sebaceous gland | 2.28e-07 | 2 |
skin sebaceous gland | 2.28e-07 | 2 |
sweat gland | 2.28e-07 | 2 |
sweat gland placode | 2.28e-07 | 2 |
sebaceous gland placode | 2.28e-07 | 2 |