FFCP PHASE1:Hg19::chr1:159832438..159832449,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=391123 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32063 | |||
|TSSclassifier=strong | |||
|UniProt=Q5VU13 | |||
|association_with_transcript=0bp_to_ENST00000368100,NM_001013661,uc001fuh.2_5end | |||
|coexpression_cluster_id=C197 | |||
|description=CAGE_peak_1_at_VSIG8_5end | |||
|id=chr1:159832438..159832449,- | |||
|ontology_enrichment_celltype=CL:0002149!4.03e-08!6;CL:0002255!4.03e-08!6;CL:0002623!1.44e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002149;5.79e-09;6!CL:0002255;5.79e-09;6!CL:0001014;4.83e-07;2!CL:0001016;4.83e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,5.79e-09,6;CL:0002255,5.79e-09,6;CL:0001014,5.28e-07,2;CL:0001016,5.28e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0000358;4.77e-13;1!UBERON:0009143;8.15e-13;1!UBERON:0005795;2.26e-11;10!UBERON:0008814;2.15e-07;2!UBERON:0010056;2.15e-07;2 | |||
|ontology_enrichment_disease=DOID:3001!4.03e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:3151;3.14e-13;1!DOID:3149;3.14e-13;1!DOID:3001;5.79e-09;6!DOID:3451;3.00e-07;2!DOID:4159;3.00e-07;2!DOID:0060122;3.00e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.33e-13,1;DOID:3149,3.33e-13,1;DOID:3001,5.79e-09,6;DOID:3451,3.09e-07,2;DOID:4159,3.09e-07,2;DOID:0060122,3.09e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001042!1.98e-12!10;UBERON:0009145!1.98e-12!10;UBERON:0006562!2.84e-11!11;UBERON:0005795!3.38e-10!22;UBERON:0000166!5.09e-08!21;UBERON:0003408!5.15e-08!10;UBERON:0000995!6.24e-08!21;UBERON:0001723!6.31e-08!3;UBERON:0001033!6.31e-08!3;UBERON:0010056!6.31e-08!3;UBERON:0003975!1.53e-07!22;UBERON:0000078!7.86e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;4.90e-17;3!UBERON:0001033;4.90e-17;3!UBERON:0007029;1.82e-13;1!UBERON:0005795;3.14e-13;1!UBERON:0002372;4.77e-13;1!UBERON:0001961;4.77e-13;1!UBERON:0001744;4.77e-13;1!UBERON:0001042;4.77e-13;1!UBERON:0001735;4.77e-13;1!UBERON:0000014;5.89e-13;4!UBERON:0002426;8.15e-13;1!UBERON:0003831;8.15e-13;1!UBERON:0003898;8.15e-13;1!UBERON:0004830;8.15e-13;1!UBERON:0003830;8.15e-13;1!UBERON:0005175;8.15e-13;1!UBERON:0001774;8.15e-13;1!UBERON:0001103;8.15e-13;1!UBERON:0000995;2.30e-11;17!UBERON:0003975;9.57e-11;18!UBERON:0004175;3.06e-09;21!UBERON:0000002;1.15e-08;6!UBERON:0001560;1.15e-08;6!UBERON:0006562;3.70e-07;2!UBERON:0005090;4.83e-07;2!UBERON:0001630;4.83e-07;2!UBERON:0000165;5.02e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,4.90e-17,3;UBERON:0001033,4.90e-17,3;UBERON:0010056,4.90e-17,3;UBERON:0007029,1.82e-13,1;UBERON:0005795,2.07e-13,22;UBERON:0002372,5.38e-13,1;UBERON:0001961,5.38e-13,1;UBERON:0001744,5.38e-13,1;UBERON:0001735,5.38e-13,1;UBERON:0000014,6.07e-13,4;UBERON:0002426,7.68e-13,1;UBERON:0003831,7.68e-13,1;UBERON:0003898,7.68e-13,1;UBERON:0004830,7.68e-13,1;UBERON:0003830,7.68e-13,1;UBERON:0005175,7.68e-13,1;UBERON:0001774,7.68e-13,1;UBERON:0001103,7.68e-13,1;UBERON:0010084,7.68e-13,1;UBERON:0001042,2.55e-11,10;UBERON:0009145,2.55e-11,10;UBERON:0006562,2.43e-10,11;UBERON:0000995,2.84e-09,21;UBERON:0000166,6.90e-09,22;UBERON:0003975,7.34e-09,22;UBERON:0000002,1.00e-08,6;UBERON:0001560,1.00e-08,6;UBERON:0004175,8.08e-08,25;UBERON:0005090,4.69e-07,2;UBERON:0001630,4.69e-07,2;UBERON:0000165,8.80e-07,29;UBERON:0000930,8.80e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03423011972439,0.291604613383254,0,0,0,0,0,0,0,0,2.92789862985067,1.69290568708354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.293977192243133,0,0,0,0,0,0,1.64881328030313,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,1.5476039091159,0,4.36065093879046,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3414369541879,3.45629830907046,0,0,0,0,0,6.51433409895072,15.2886230236389,0,0,0,0,0,0,23.3141276668387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0.710478008196067,0.31037357147929,0,0,0,128.23516451131,5.13349951627922,2.28996980249598,0,0,0,0.106727345877715,0,0,2.34640942403454,0,4.88275413978886,0,0.201273793591026,0 | |||
|short_description=p1@VSIG8 | |||
}} |
Revision as of 21:40, 10 January 2014
Short description: | p1@VSIG8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_VSIG8_5end |
Coexpression cluster: | C197_tongue_esophagus_tonsil_salivary_cervix_nasal_Gingival |
Association with transcript: | 0bp_to_ENST00000368100, NM_001013661, uc001fuh.2_5end |
EntrezGene: | VSIG8 |
HGNC: | 32063 |
UniProt: | Q5VU13 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 5.79e-09 | 6 |
stromal cell of endometrium | 5.79e-09 | 6 |
CD1a-positive Langerhans cell | 5.28e-07 | 2 |
immature CD1a-positive Langerhans cell | 5.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
tongue | 4.90e-17 | 3 |
gustatory system | 4.90e-17 | 3 |
future tongue | 4.90e-17 | 3 |
surface | 1.82e-13 | 1 |
embryonic uterus | 2.07e-13 | 22 |
tonsil | 5.38e-13 | 1 |
mucosa-associated lymphoid tissue | 5.38e-13 | 1 |
lymphoid tissue | 5.38e-13 | 1 |
tonsillar ring | 5.38e-13 | 1 |
zone of skin | 6.07e-13 | 4 |
chest muscle | 7.68e-13 | 1 |
respiratory system muscle | 7.68e-13 | 1 |
skeletal muscle of trunk | 7.68e-13 | 1 |
respiratory system skeletal muscle | 7.68e-13 | 1 |
thoracic segment muscle | 7.68e-13 | 1 |
chest organ | 7.68e-13 | 1 |
muscle of trunk | 7.68e-13 | 1 |
diaphragm | 7.68e-13 | 1 |
future diaphragm | 7.68e-13 | 1 |
chordate pharynx | 2.55e-11 | 10 |
pharyngeal region of foregut | 2.55e-11 | 10 |
pharynx | 2.43e-10 | 11 |
uterus | 2.84e-09 | 21 |
oral opening | 6.90e-09 | 22 |
internal female genitalia | 7.34e-09 | 22 |
uterine cervix | 1.00e-08 | 6 |
neck of organ | 1.00e-08 | 6 |
internal genitalia | 8.08e-08 | 25 |
muscle structure | 4.69e-07 | 2 |
muscle organ | 4.69e-07 | 2 |
mouth | 8.80e-07 | 29 |
stomodeum | 8.80e-07 | 29 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.33e-13 | 1 |
keratoacanthoma | 3.33e-13 | 1 |
female reproductive endometrioid cancer | 5.79e-09 | 6 |
skin carcinoma | 3.09e-07 | 2 |
skin cancer | 3.09e-07 | 2 |
integumentary system cancer | 3.09e-07 | 2 |