FFCP PHASE1:Hg19::chr1:113249948..113250035,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=669 | |||
|TSSclassifier=strong | |||
|UniProt=P08134 | |||
|association_with_transcript=0bp_to_ENST00000339083,NM_001042678,NM_175744,uc001ecq.1,uc001ecr.1,uc009wgk.1_5end | |||
|coexpression_cluster_id=C843 | |||
|description=CAGE_peak_4_at_RHOC_5end | |||
|id=chr1:113249948..113250035,- | |||
|ontology_enrichment_celltype=CL:0000055!8.60e-27!180;CL:0000222!5.50e-23!119;CL:0000220!1.33e-22!246;CL:0002321!5.91e-22!248;CL:0000183!3.61e-17!59;CL:0000680!8.55e-16!57;CL:0000056!8.55e-16!57;CL:0000355!8.55e-16!57;CL:0000187!4.96e-15!54;CL:0000393!4.07e-13!60;CL:0000211!4.07e-13!60;CL:0000192!7.37e-13!42;CL:0000514!7.37e-13!42;CL:0000359!7.46e-12!32;CL:0002371!2.75e-09!591;CL:0000144!7.83e-09!625;CL:0000057!1.84e-08!75;CL:1000449!8.68e-08!16;CL:1000497!2.15e-07!18;CL:0002518!2.15e-07!18;CL:0000213!2.85e-07!57;CL:0000215!2.85e-07!57;CL:0002078!3.44e-07!44;CL:0002681!6.51e-07!13;CL:0002584!6.51e-07!13;CL:0000066!9.90e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.30e-11;32!CL:0000192;5.25e-10;43!CL:0000187;9.43e-09;55!CL:1000449;1.45e-07;15!CL:0000393;2.61e-07;61!CL:0000211;2.61e-07;61!CL:1000497;3.31e-07;17!CL:0002518;3.31e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.56e-24,121;CL:0002321,9.36e-22,250;CL:0000680,1.41e-16,58;CL:0000056,1.41e-16,58;CL:0000355,1.41e-16,58;CL:0000187,8.60e-16,55;CL:0000393,1.25e-13,61;CL:0000211,1.25e-13,61;CL:0000192,1.44e-13,43;CL:0000514,1.44e-13,43;CL:0000359,4.24e-12,32;CL:0000057,1.20e-08,76;CL:0002078,1.54e-07,45;CL:0000213,1.62e-07,58;CL:0000215,1.62e-07,58;CL:1000449,1.72e-07,15;CL:1000497,4.30e-07,17;CL:0002518,4.30e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;5.25e-10;43!CL:0000355;3.67e-09;58!CL:0000222;4.97e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!7.50e-20!79;UBERON:0007798!7.50e-20!79;UBERON:0004872!1.71e-19!84;UBERON:0003914!1.94e-18!118;UBERON:0000468!4.37e-18!659;UBERON:0002100!1.54e-17!216;UBERON:0005256!1.87e-17!143;UBERON:0000119!4.03e-17!312;UBERON:0000055!2.21e-16!69;UBERON:0000475!2.28e-16!365;UBERON:0000483!2.35e-16!309;UBERON:0000486!2.81e-16!82;UBERON:0001981!3.29e-16!60;UBERON:0007500!3.29e-16!60;UBERON:0004537!3.29e-16!60;UBERON:0006965!3.29e-16!60;UBERON:0000467!1.42e-15!625;UBERON:0004290!1.52e-15!70;UBERON:0000914!1.94e-15!83;UBERON:0002329!1.94e-15!83;UBERON:0003077!1.94e-15!83;UBERON:0003059!1.94e-15!83;UBERON:0007282!1.94e-15!83;UBERON:0009618!1.94e-15!83;UBERON:0007285!1.94e-15!83;UBERON:0000480!2.97e-15!626;UBERON:0002385!4.92e-15!63;UBERON:0001015!4.92e-15!63;UBERON:0000383!4.92e-15!63;UBERON:0001134!1.67e-14!61;UBERON:0002036!1.67e-14!61;UBERON:0003082!1.67e-14!61;UBERON:0001009!1.93e-14!113;UBERON:0001637!4.39e-14!42;UBERON:0003509!4.39e-14!42;UBERON:0004572!4.39e-14!42;UBERON:0004535!4.41e-14!110;UBERON:0000490!1.00e-13!138;UBERON:0000481!3.23e-12!347;UBERON:0000923!1.60e-11!604;UBERON:0005291!1.60e-11!604;UBERON:0006598!1.60e-11!604;UBERON:0002532!1.60e-11!604;UBERON:0002050!1.71e-11!605;UBERON:0005423!1.71e-11!605;UBERON:0000922!2.83e-11!612;UBERON:0003103!2.88e-11!69;UBERON:0000477!7.12e-11!286;UBERON:0004111!7.39e-11!241;UBERON:0004573!1.56e-10!33;UBERON:0004571!1.56e-10!33;UBERON:0003104!2.76e-10!238;UBERON:0009142!2.76e-10!238;UBERON:0000926!4.94e-09!448;UBERON:0004120!4.94e-09!448;UBERON:0006603!4.94e-09!448;UBERON:0004876!7.01e-09!20;UBERON:0000025!1.58e-08!194;UBERON:0006555!5.54e-08!17;UBERON:0005103!5.54e-08!17;UBERON:0000083!5.54e-08!17;UBERON:0009201!5.54e-08!17;UBERON:0004819!5.54e-08!17;UBERON:0006553!5.54e-08!17;UBERON:0003074!5.54e-08!17;UBERON:0003060!5.54e-08!17;UBERON:0000080!6.23e-08!18;UBERON:0002120!6.23e-08!18;UBERON:0004875!6.23e-08!18;UBERON:0005721!6.23e-08!18;UBERON:0005754!6.23e-08!18;UBERON:0007297!6.23e-08!18;UBERON:0004211!8.68e-08!16;UBERON:0001285!8.68e-08!16;UBERON:0007684!8.68e-08!16;UBERON:0003220!8.68e-08!16;UBERON:0004208!8.68e-08!16;UBERON:0004923!1.92e-07!57;UBERON:0001008!2.46e-07!45;UBERON:0006554!3.09e-07!44;UBERON:0003064!5.16e-07!37;UBERON:0001225!6.51e-07!13;UBERON:0008987!6.51e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.59e-10;42!UBERON:0003509;3.59e-10;42!UBERON:0004572;3.59e-10;42!UBERON:0004573;1.59e-09;33!UBERON:0004571;1.59e-09;33!UBERON:0003914;1.78e-09;74!UBERON:0007500;3.05e-09;56!UBERON:0001981;3.05e-09;56!UBERON:0004537;3.05e-09;56!UBERON:0002049;8.92e-09;75!UBERON:0007798;8.92e-09;75!UBERON:0000055;7.72e-08;65!UBERON:0006555;1.45e-07;15!UBERON:0004819;1.45e-07;15!UBERON:0001285;1.45e-07;15!UBERON:0007684;1.45e-07;15!UBERON:0000353;9.62e-07;15 | |||
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| |||
|short_description=p4@RHOC | |||
}} |
Revision as of 20:13, 10 January 2014
Short description: | p4@RHOC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RHOC_5end |
Coexpression cluster: | C843_Alveolar_Mesenchymal_Hepatic_Placental_Renal_Smooth_Fibroblast |
Association with transcript: | 0bp_to_ENST00000339083, NM_001042678, NM_175744, uc001ecq.1, uc001ecr.1, uc009wgk.1_5end |
EntrezGene: | RHOC |
HGNC: | 669 |
UniProt: | P08134 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.56e-24 | 121 |
embryonic cell | 9.36e-22 | 250 |
muscle precursor cell | 1.41e-16 | 58 |
myoblast | 1.41e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.41e-16 | 58 |
muscle cell | 8.60e-16 | 55 |
electrically responsive cell | 1.25e-13 | 61 |
electrically active cell | 1.25e-13 | 61 |
smooth muscle cell | 1.44e-13 | 43 |
smooth muscle myoblast | 1.44e-13 | 43 |
vascular associated smooth muscle cell | 4.24e-12 | 32 |
fibroblast | 1.20e-08 | 76 |
meso-epithelial cell | 1.54e-07 | 45 |
lining cell | 1.62e-07 | 58 |
barrier cell | 1.62e-07 | 58 |
epithelial cell of nephron | 1.72e-07 | 15 |
kidney cell | 4.30e-07 | 17 |
kidney epithelial cell | 4.30e-07 | 17 |