FFCP PHASE1:Hg19::chr1:110613276..110613299,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=257 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=449 | |||
|TSSclassifier=strong | |||
|UniProt=O95076 | |||
|association_with_transcript=22bp_to_NM_006492,uc001dzb.2_5end | |||
|description=CAGE_peak_2_at_ALX3_5end | |||
|id=chr1:110613276..110613299,- | |||
|ontology_enrichment_celltype=CL:0000708!1.58e-08!3;CL:0000197!1.20e-07!6;CL:0000098!1.20e-07!6;CL:0002167!1.20e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000708;2.74e-18;3!CL:0000197;6.96e-17;6!CL:0000098;6.96e-17;6!CL:0002167;6.96e-17;6!CL:0000123;1.08e-13;2!CL:0000242;1.08e-13;2!CL:0002367;9.31e-13;2!CL:0002550;4.74e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000708,4.55e-18,3;CL:0000197,6.70e-17,6;CL:0000098,6.70e-17,6;CL:0002167,6.70e-17,6;CL:0000242,1.08e-13,2;CL:0002367,7.57e-13,2;CL:0002550,4.34e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.51e-09;3!UBERON:0000358;2.22e-07;1!UBERON:0010115;2.22e-07;1!UBERON:0005425;4.74e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;7.36e-15;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,8.41e-15,10 | |||
|ontology_enrichment_uberon=UBERON:0002346!3.81e-16!90;UBERON:0002616!1.45e-13!59;UBERON:0000924!1.49e-13!173;UBERON:0006601!1.49e-13!173;UBERON:0003056!2.47e-13!61;UBERON:0003080!4.24e-12!42;UBERON:0003075!6.30e-12!86;UBERON:0007284!6.30e-12!86;UBERON:0000033!3.20e-11!123;UBERON:0000153!3.78e-11!129;UBERON:0007811!3.78e-11!129;UBERON:0000073!4.60e-11!94;UBERON:0001016!4.60e-11!94;UBERON:0002780!6.83e-11!41;UBERON:0001890!6.83e-11!41;UBERON:0006240!6.83e-11!41;UBERON:0000955!1.41e-10!69;UBERON:0006238!1.41e-10!69;UBERON:0005743!1.60e-10!86;UBERON:0004121!1.82e-10!169;UBERON:0001893!1.87e-10!34;UBERON:0001017!3.62e-10!82;UBERON:0001049!4.62e-10!57;UBERON:0005068!4.62e-10!57;UBERON:0006241!4.62e-10!57;UBERON:0007135!4.62e-10!57;UBERON:0001869!9.42e-10!32;UBERON:0002791!2.62e-09!33;UBERON:0007023!7.77e-09!115;UBERON:0001950!1.50e-08!20;UBERON:0003210!1.58e-08!3;UBERON:0000956!5.51e-08!25;UBERON:0000203!5.51e-08!25;UBERON:0002020!1.20e-07!34;UBERON:0003528!1.20e-07!34;UBERON:0002619!1.22e-07!22;UBERON:0002200!1.68e-07!11;UBERON:0006876!1.68e-07!11;UBERON:0001032!8.49e-07!24;UBERON:0004456!8.49e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;6.97e-24;4!UBERON:0000923;6.97e-24;4!UBERON:0010316;6.97e-24;4!UBERON:0005291;6.97e-24;4!UBERON:0002050;3.73e-19;5!UBERON:0005423;3.73e-19;5!UBERON:0003210;2.74e-18;3!UBERON:0003714;4.27e-13;2!UBERON:0002360;9.31e-13;2!UBERON:0000094;9.31e-13;2!UBERON:0005969;9.31e-13;2!UBERON:0010743;9.31e-13;2!UBERON:0003956;9.31e-13;2!UBERON:0002104;1.47e-09;21!UBERON:0001032;2.69e-08;24!UBERON:0004456;2.69e-08;24!UBERON:0002363;2.22e-07;1!UBERON:0000970;3.36e-07;20!UBERON:0000941;4.74e-07;1!UBERON:0001785;4.74e-07;1!UBERON:0002464;4.74e-07;1!UBERON:0004904;4.74e-07;1!UBERON:0001021;4.74e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003210,4.55e-18,3;UBERON:0003714,3.67e-13,2;UBERON:0005969,7.57e-13,2;UBERON:0003956,7.57e-13,2;UBERON:0002360,1.45e-12,2;UBERON:0000094,1.45e-12,2;UBERON:0010743,1.45e-12,2;UBERON:0000970,1.37e-09,21;UBERON:0002104,1.37e-09,21;UBERON:0000020,2.54e-08,24;UBERON:0001032,2.54e-08,24;UBERON:0004456,2.54e-08,24;UBERON:0002363,2.37e-07,1;UBERON:0007645,2.37e-07,1;UBERON:0007647,2.37e-07,1;UBERON:0010115,2.37e-07,1;UBERON:0000019,3.02e-07,20;UBERON:0000047,3.02e-07,20;UBERON:0010312,3.02e-07,20;UBERON:0004088,3.02e-07,20;UBERON:0010230,3.02e-07,20;UBERON:0003072,3.02e-07,20;UBERON:0004128,3.02e-07,20;UBERON:0003071,3.02e-07,20;UBERON:0000941,4.08e-07,1;UBERON:0001785,4.08e-07,1;UBERON:0002464,4.08e-07,1;UBERON:0004904,4.08e-07,1;UBERON:0001021,4.08e-07,1;UBERON:0003902,4.08e-07,1;UBERON:0005425,4.08e-07,1 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0.576175924479999,1.40592859100278,0,0,0,0.117434498643765,0,0.140450806702248,0,0.368502951935304,0,0,0,0,0,1.85169725349473,2.75260743718321,0,0,0,0,0,0.358779271377724,0.427114777637135,0,0,0,0.257640540045629,0.37223371266318,0,0,0.252433774244115,0,1.61646056818812,0,0,1.3564847384839,0,0,0,0.121973706129595,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,2.6064664424826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,4.3596006883328,1.39342743059805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74347550755453,5.17444067511769,5.04647728108591,4.4513737697231,0,0,0,0,0,0.434418072340414,0.979005787313703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.116475108079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27683904259429,1.74967360122491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,1.47787785689595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,2.08349993919951,0,0,0,0.110579259931225,0.295547618953547,1.09692698576986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,2.46427660551103,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,1.12990370390266,0,0,0.0633107959558787,2.54216797555244,0,0,0,0,0,0.343189995723929,0,0.745515213392595,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1767075509789,6.81128834470878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3946505990805,2.76347396132188,1.11542187833102,15.0834127852776,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0.504143392443436,0.484100767249525,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.206686796501184,0.126831620387814,0,0,0.496211178389294,1.23109871051734,0,0,0,0.606965604236632,0,0,0,0,0,0.394636641377094,0,0,0,0,0,0,0,0,2.50167904618297,0,0,1.56472445072321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40363678077263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407948941145488,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0,0,0,0.0620747142958579,0,0,0,0.217716747896961,0.684466602170562,0,0,0,0.0814032686109745,0,0,0,2.34640942403454,0,0,0.665756774185513,0.201273793591026,0 | |||
|short_description=p2@ALX3 | |||
}} |
Revision as of 20:03, 10 January 2014
Short description: | p2@ALX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ALX3_5end |
Coexpression cluster: | NA |
Association with transcript: | 22bp_to_NM_006492, uc001dzb.2_5end |
EntrezGene: | ALX3 |
HGNC: | 449 |
UniProt: | O95076 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leptomeningeal cell | 4.55e-18 | 3 |
receptor cell | 6.70e-17 | 6 |
sensory epithelial cell | 6.70e-17 | 6 |
olfactory epithelial cell | 6.70e-17 | 6 |
Merkel cell | 1.08e-13 | 2 |
trabecular meshwork cell | 7.57e-13 | 2 |
fibroblast of the conjuctiva | 4.34e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
blood-cerebrospinal fluid barrier | 4.55e-18 | 3 |
neural tissue | 3.67e-13 | 2 |
reticulum trabeculare | 7.57e-13 | 2 |
aqueous drainage system | 7.57e-13 | 2 |
meninx | 1.45e-12 | 2 |
membrane organ | 1.45e-12 | 2 |
meningeal cluster | 1.45e-12 | 2 |
eye | 1.37e-09 | 21 |
visual system | 1.37e-09 | 21 |
sense organ | 2.54e-08 | 24 |
sensory system | 2.54e-08 | 24 |
entire sense organ system | 2.54e-08 | 24 |
dura mater | 2.37e-07 | 1 |
future meninx | 2.37e-07 | 1 |
ectomeninx | 2.37e-07 | 1 |
future dura mater | 2.37e-07 | 1 |
camera-type eye | 3.02e-07 | 20 |
simple eye | 3.02e-07 | 20 |
immature eye | 3.02e-07 | 20 |
ocular region | 3.02e-07 | 20 |
eyeball of camera-type eye | 3.02e-07 | 20 |
optic cup | 3.02e-07 | 20 |
optic vesicle | 3.02e-07 | 20 |
eye primordium | 3.02e-07 | 20 |
cranial nerve II | 4.08e-07 | 1 |
cranial nerve | 4.08e-07 | 1 |
nerve trunk | 4.08e-07 | 1 |
nerve connecting eye with brain | 4.08e-07 | 1 |
nerve | 4.08e-07 | 1 |
retinal neural layer | 4.08e-07 | 1 |
presumptive neural retina | 4.08e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.41e-15 | 10 |