FFCP PHASE1:Hg19::chr1:43665004..43665072,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_at_chr1:43665004..43665072,+ | |||
|id=chr1:43665004..43665072,+ | |||
|ontology_enrichment_celltype=CL:0000362!2.31e-14!8;CL:0000240!4.36e-14!6;CL:0000311!4.36e-14!6;CL:0000079!4.36e-14!6;CL:0000237!4.36e-14!6;CL:0000036!4.36e-14!6;CL:0000357!4.36e-14!6;CL:0000114!4.36e-14!6;CL:0002159!9.96e-14!13;CL:0000312!3.25e-12!5;CL:0002076!3.80e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:0000362;6.58e-15;9!CL:0002159;2.21e-13;14!CL:0000317;5.49e-12;2!CL:1000448;5.49e-12;2!CL:0002308;5.49e-12;2!CL:0002140;5.49e-12;2!CL:0000312;2.99e-10;5!CL:0000240;1.27e-08;6!CL:0000311;1.27e-08;6!CL:0000079;1.27e-08;6!CL:0000237;1.27e-08;6!CL:0000945;5.12e-08;24!CL:1001319;4.78e-07;1!CL:1000600;4.78e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000362,6.99e-15,9;CL:0002159,2.26e-13,14;CL:0000317,5.81e-12,2;CL:1000448,5.81e-12,2;CL:0002308,5.81e-12,2;CL:0002140,5.81e-12,2;CL:0000312,3.09e-10,5;CL:0000838,3.63e-09,52;CL:0000542,5.84e-09,53;CL:0000051,5.84e-09,53;CL:0000240,1.30e-08,6;CL:0000311,1.30e-08,6;CL:0000079,1.30e-08,6;CL:0000237,1.30e-08,6;CL:0000036,1.30e-08,6;CL:0000357,1.30e-08,6;CL:0000114,1.30e-08,6;CL:0000076,1.45e-08,63;CL:0000945,5.25e-08,24;CL:0000826,5.25e-08,24;CL:1001319,5.06e-07,1;CL:1000600,5.06e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000357;1.27e-08;6!CL:0000114;1.27e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!6.09e-10!14;DOID:0060058!1.85e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.68e-14;14!DOID:0060058;5.94e-14;10!DOID:0060060;2.50e-07;1!DOID:0060061;2.50e-07;1!DOID:8691;2.50e-07;1!DOID:630;2.99e-07;1!DOID:0050177;2.99e-07;1!DOID:0050427;2.99e-07;1!DOID:3151;8.02e-07;1!DOID:3149;8.02e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.52e-14,14;DOID:0060058,5.94e-14,10;DOID:0060060,2.50e-07,1;DOID:0060061,2.50e-07,1;DOID:8691,2.50e-07,1;DOID:630,2.99e-07,1;DOID:0050177,2.99e-07,1;DOID:0050427,2.99e-07,1;DOID:3151,7.57e-07,1;DOID:3149,7.57e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001003!6.81e-10!14;UBERON:0007376!6.81e-10!14;UBERON:0007383!6.81e-10!14;UBERON:0000344!1.09e-08!12;UBERON:0003729!3.26e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;3.55e-13;4!UBERON:0004785;3.55e-13;4!UBERON:0002419;5.49e-12;2!UBERON:0007771;5.49e-12;2!UBERON:0003297;5.49e-12;2!UBERON:0001821;5.49e-12;2!UBERON:0003487;5.49e-12;2!UBERON:0001820;5.49e-12;2!UBERON:0000974;6.03e-09;6!UBERON:0001003;7.25e-09;15!UBERON:0007376;7.25e-09;15!UBERON:0000997;4.13e-07;1!UBERON:0005056;4.13e-07;1!UBERON:0004176;4.13e-07;1!UBERON:0004645;4.78e-07;1!UBERON:0001256;4.78e-07;1!UBERON:0001259;4.78e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,3.33e-13,4;UBERON:0004785,3.33e-13,4;UBERON:0002419,5.81e-12,2;UBERON:0007771,5.81e-12,2;UBERON:0003297,5.81e-12,2;UBERON:0001821,5.81e-12,2;UBERON:0003487,5.81e-12,2;UBERON:0001820,5.81e-12,2;UBERON:0005089,5.81e-12,2;UBERON:0005088,5.81e-12,2;UBERON:0001003,7.51e-09,15;UBERON:0007376,7.51e-09,15;UBERON:0007383,7.51e-09,15;UBERON:0000997,4.01e-07,1;UBERON:0005056,4.01e-07,1;UBERON:0004645,5.06e-07,1;UBERON:0001256,5.06e-07,1;UBERON:0001259,5.06e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.8308264403792,15.10650845879,14.718916105658,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,1.09750285408626,2.24803506515239,1.50793458617446,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17587489739202,0.708875486211932,0,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0.231046011313244,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,2.29706215198469,2.60024098414608,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0.320472213382419,0,7.59624669541198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,1.33732061132974,0,0,0,0,0,0,0,5.43852784948307,0,0,0,0,0,2.70786572014353,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0.344743373241465,0,0,0,0,0,0,0,0,0,4.46155981691531,0.0769502585037971,0,0.922255617552241,0.718061155278177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,163.086620774342,163.104399409384,167.806072855267,0,0,0,0.182454789215666,0.586993856796269,0,0,0,0,0,0.901940516486955,0,0,0,0,0,3.41531455235751,0,0,7.83939179315021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.2733146218524,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01607998478941,0,0,0,0,0,0,0,0,2.68347750079413,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,1.10043013569766,0,0,0.395223263795889,0,5.10673006216145,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0.249960815924213,0,0,0,0.936669811613763,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16916185303633,0.265729680626726,3.76200406788442,0,0,0,84.3946810507804,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,10.6172751012966,4.03542916747694,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0.703484977438482,2.04419884223352,0,0,0,0,0.177404740325278,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,2.71733118420012,0,0,0,0,0,0,0,0,0,0,0,35.0793457296501,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0.452122368852043,0.31037357147929,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,5.04700265388042,0,0,0,0,0,0,0,0,28.2100273226845 | |||
|short_description=p@chr1:43665004..43665072,+ | |||
}} |
Revision as of 18:11, 10 January 2014
Short description: | p@chr1:43665004..43665072, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:43665004..43665072, + |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epidermal cell | 6.99e-15 | 9 |
general ecto-epithelial cell | 2.26e-13 | 14 |
sebum secreting cell | 5.81e-12 | 2 |
epithelial cell of sweat gland | 5.81e-12 | 2 |
epithelial cell of skin gland | 5.81e-12 | 2 |
acinar cell of sebaceous gland | 5.81e-12 | 2 |
keratinocyte | 3.09e-10 | 5 |
lymphoid lineage restricted progenitor cell | 3.63e-09 | 52 |
lymphocyte | 5.84e-09 | 53 |
common lymphoid progenitor | 5.84e-09 | 53 |
stratified squamous epithelial cell | 1.30e-08 | 6 |
keratin accumulating cell | 1.30e-08 | 6 |
stratified epithelial cell | 1.30e-08 | 6 |
keratinizing barrier epithelial cell | 1.30e-08 | 6 |
epithelial fate stem cell | 1.30e-08 | 6 |
stratified epithelial stem cell | 1.30e-08 | 6 |
surface ectodermal cell | 1.30e-08 | 6 |
squamous epithelial cell | 1.45e-08 | 63 |
lymphocyte of B lineage | 5.25e-08 | 24 |
pro-B cell | 5.25e-08 | 24 |
bladder cell | 5.06e-07 | 1 |
lower urinary tract cell | 5.06e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 3.33e-13 | 4 |
respiratory system mucosa | 3.33e-13 | 4 |
skin gland | 5.81e-12 | 2 |
epidermis gland | 5.81e-12 | 2 |
gland of integumental system | 5.81e-12 | 2 |
sebaceous gland | 5.81e-12 | 2 |
skin sebaceous gland | 5.81e-12 | 2 |
sweat gland | 5.81e-12 | 2 |
sweat gland placode | 5.81e-12 | 2 |
sebaceous gland placode | 5.81e-12 | 2 |
skin epidermis | 7.51e-09 | 15 |
outer epithelium | 7.51e-09 | 15 |
enveloping layer of ectoderm | 7.51e-09 | 15 |
mammalian vulva | 4.01e-07 | 1 |
external female genitalia | 4.01e-07 | 1 |
urinary bladder urothelium | 5.06e-07 | 1 |
wall of urinary bladder | 5.06e-07 | 1 |
mucosa of urinary bladder | 5.06e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.52e-14 | 14 |
lymphoma | 5.94e-14 | 10 |
non-Hodgkin lymphoma | 2.50e-07 | 1 |
cutaneous T cell lymphoma | 2.50e-07 | 1 |
mycosis fungoides | 2.50e-07 | 1 |
genetic disease | 2.99e-07 | 1 |
monogenic disease | 2.99e-07 | 1 |
xeroderma pigmentosum | 2.99e-07 | 1 |
skin squamous cell carcinoma | 7.57e-07 | 1 |
keratoacanthoma | 7.57e-07 | 1 |