FFCP PHASE1:Hg19::chr1:1709845..1709914,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65220 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29831 | |||
|TSSclassifier=strong | |||
|UniProt=O95544,Q5QPS4 | |||
|association_with_transcript=0bp_to_ENST00000341426,ENST00000344463,ENST00000460602,ENST00000464373,ENST00000492768,NM_023018,uc001aic.2,uc009vkw.2_5end | |||
|description=CAGE_peak_1_at_NADK_5end | |||
|id=chr1:1709845..1709914,- | |||
|ontology_enrichment_celltype=CL:0000220!1.25e-14!246;CL:0002321!5.36e-14!248;CL:0000222!1.03e-10!119;CL:0002078!1.07e-10!44;CL:0000066!4.26e-10!254;CL:0000115!7.33e-09!35;CL:0002139!1.04e-07!24;CL:0000213!1.09e-07!57;CL:0000215!1.09e-07!57;CL:0000071!1.20e-07!18;CL:0002546!1.20e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000115;4.45e-08;36!CL:0002078;6.92e-08;45!CL:0002139;8.33e-08;24!CL:0000071;1.05e-07;18!CL:1000449;9.80e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.13e-14,250;CL:0002078,3.20e-11,45;CL:0000222,4.13e-11,121;CL:0000066,4.54e-10,253;CL:0000115,2.20e-09,36;CL:0000213,4.05e-08,58;CL:0000215,4.05e-08,58;CL:0002139,1.04e-07,24;CL:0000071,1.20e-07,18;CL:0002546,1.20e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;1.05e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!2.10e-13!118;UBERON:0002100!5.47e-11!216;UBERON:0002049!1.71e-10!79;UBERON:0007798!1.71e-10!79;UBERON:0003104!4.46e-10!238;UBERON:0009142!4.46e-10!238;UBERON:0000119!1.18e-09!312;UBERON:0005256!1.19e-09!143;UBERON:0000483!2.60e-09!309;UBERON:0000055!3.52e-09!69;UBERON:0009569!3.96e-09!113;UBERON:0004872!4.37e-09!84;UBERON:0002417!1.75e-08!61;UBERON:0000916!1.75e-08!61;UBERON:0001981!2.26e-08!60;UBERON:0007500!2.26e-08!60;UBERON:0004537!2.26e-08!60;UBERON:0006965!2.26e-08!60;UBERON:0000481!5.34e-08!347;UBERON:0001986!1.20e-07!18;UBERON:0004638!1.20e-07!18;UBERON:0004852!1.20e-07!18;UBERON:0005172!1.43e-07!55;UBERON:0005173!1.43e-07!55;UBERON:0000490!2.74e-07!138;UBERON:0006914!4.41e-07!25;UBERON:0005177!6.19e-07!107;UBERON:0000466!9.03e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.05e-07;18!UBERON:0001986;1.05e-07;18!UBERON:0004852;1.05e-07;18!UBERON:0006914;3.46e-07;25!UBERON:0000353;5.99e-07;15!UBERON:0006555;9.80e-07;15!UBERON:0004819;9.80e-07;15!UBERON:0001285;9.80e-07;15!UBERON:0007684;9.80e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,2.05e-13,117;UBERON:0002100,2.56e-11,199;UBERON:0002049,2.06e-10,78;UBERON:0007798,2.06e-10,78;UBERON:0003104,2.08e-10,160;UBERON:0009142,2.08e-10,160;UBERON:0000119,3.76e-09,309;UBERON:0000055,4.22e-09,68;UBERON:0000490,4.75e-09,148;UBERON:0009569,5.28e-09,112;UBERON:0004872,5.29e-09,83;UBERON:0000483,8.09e-09,306;UBERON:0002417,1.64e-08,60;UBERON:0000916,1.64e-08,60;UBERON:0007500,2.69e-08,59;UBERON:0001981,2.69e-08,59;UBERON:0004537,2.69e-08,59;UBERON:0006965,2.69e-08,59;UBERON:0005256,2.88e-08,122;UBERON:0004638,1.20e-07,18;UBERON:0001986,1.20e-07,18;UBERON:0004852,1.20e-07,18;UBERON:0005172,1.34e-07,54;UBERON:0005173,1.34e-07,54;UBERON:0005177,4.23e-07,101;UBERON:0006914,4.41e-07,25;UBERON:0000353,6.17e-07,15 | |||
|phase1_expression=26.8884001320424,39.1803958720499,23.5393854840272,35.0256544235956,36.6508097430376,29.6595098194125,50.6599756336621,31.5859936713415,59.811508857763,32.4368796181992,73.9669238050773,28.3973783769224,33.4984062350136,22.4017098857684,35.1281218271591,15.4634783683908,16.8754467846714,12.4152715365853,15.6138495612962,48.2634547661009,53.24418041475,49.5258459935379,27.4786547645814,25.1848942134107,27.8704659900462,18.6448710025001,19.1294373418374,20.7796462668113,3.54027849164014,8.06041736004147,6.50227717927519,33.0991640812414,43.0724463852898,36.9754010166788,26.0289793949813,43.7881236061258,14.6800219667424,4.43196326825502,4.21143339687298,5.64228263861215,3.58264758783879,4.21061765824673,3.34848237924443,2.4717700592526,2.26725566213286,2.42584061187816,2.55671940596253,1.23350366406548,2.78735733805593,0.863077176966451,2.30544635876191,1.41889337933151,1.03423704220986,3.87290810150296,1.35426486594342,1.69418105588344,4.91231070104122,1.34834090667051,2.14258724659632,1.60464513538047,1.91801137739712,3.62836430205388,1.99463657621632,0.852449501065388,2.03146467040009,3.40431134814684,3.73693349397345,2.00998932205395,2.60741459210101,2.38907729175628,3.63239701580021,1.47311054395026,1.58231193720442,3.16882929467913,1.4882300997553,2.72556239160889,1.34794357375794,2.25265339262259,0.964353520182481,1.71007646244749,1.59133341759272,1.82664153764634,26.3994366691984,28.945346396893,19.5692035849982,17.9226693477933,20.8205913258726,17.2425731986345,22.4755256746853,21.9432363543134,14.7995371968457,10.5702694086769,15.6732023531344,5.28685314316103,8.40762844472304,23.4411835449819,7.86839080455332,5.10913991573914,12.130488440971,12.7061736496915,9.12582346574053,10.4158517261641,7.79306913631645,14.4833593950726,7.36514768687093,10.6336269400138,11.3737622781307,21.6474330336391,23.6708012558978,16.6082283649713,15.7519510137934,13.6207450295475,8.30404753707538,7.22360235842225,10.4535523804977,14.2769771798933,11.8798353016596,10.9960782554442,11.6389058328971,13.061181987288,11.7195021694155,14.2567806667256,9.48623250189969,11.3908083927432,12.4930726552346,10.6549763419808,11.4957919568947,12.7012248231581,13.6394499849589,10.7170058873271,12.1903433156981,24.1452309493309,17.6450335344072,24.2164232097659,26.5709092637021,34.0389319557936,6.36228757640879,20.4386645527107,21.9320775820637,24.6119631183446,21.7830268518953,22.3974219101089,38.979595847302,36.3368753928741,22.0692227685185,24.7264226964959,25.7938443406598,84.9026622527017,92.0911806356006,64.2621477300147,31.006935549206,34.409383804245,45.8225462122024,32.7878606315926,47.4034362917194,43.4686506265307,33.0212047128161,39.279347393738,34.8650937432976,20.4179573786449,29.4065401489677,28.130067911585,47.1039771067967,32.3543510704364,46.9882329771421,26.5220193003717,32.1077002855423,36.0356737546631,36.795992991812,31.3257667657483,45.8004359826018,1.31780417436063,0,35.3236182235453,22.8607097779847,21.6538174946431,22.9067882806869,15.7760141411848,29.792144104662,33.6406560085384,26.6872489324262,39.4668077467456,30.8098925045769,33.5429573453523,31.3846853977841,34.3581360753994,20.74233328128,36.7884647979061,37.4592092196385,25.1007601479558,34.522645207466,34.2908736039793,27.032781709478,28.9328661806632,29.1940464894497,24.5668634623536,38.747167940912,19.0080457165129,23.2430913521843,36.4064544775211,65.3942509052777,27.943794916375,23.7725187756732,22.719257469703,14.9252391099485,17.4698043605441,25.2399938963083,25.6356733941648,14.8893397621755,19.4337223824896,18.6500073020414,15.0045548042201,15.0456692688121,15.7160729427834,27.3591778807437,16.8776332241266,20.3643340786905,14.6411589061586,19.974828005379,15.1947293409683,12.7803453305981,14.7098063412355,18.3125439695327,26.669997736535,24.5471508531751,28.9672641342894,13.1731602619963,11.6626196122907,14.0594670872117,15.963802472367,11.1021174385276,13.8691396448815,40.6768784057521,45.6701066116949,27.6269842704961,21.360924689471,27.4314203034443,17.1544860057774,16.6898843177321,13.978639733242,16.2132139916619,18.5197527478545,14.9480490039991,19.5505396832238,17.0712674659051,18.0831163764803,48.7182600052268,60.3039627354817,48.5657333371052,42.6325263018072,32.956309053676,33.4161253670393,31.9026549607958,19.8658394736593,19.0632079741826,17.4999166504496,34.0225884766739,33.7205259772859,23.3227215994984,18.2399236962303,32.5808305310325,62.3960871167747,28.8662684050547,19.9400296557132,16.437217193015,26.4190599402765,21.2973335785241,23.211006572621,32.3983803163303,18.0282094039923,4.92434012174795,4.68008530278475,7.13429578985896,23.4334584966942,20.1578553838631,23.5346661422362,19.4341994265181,18.6005720648936,26.4534048623996,5.91195885475132,13.0311682339575,5.59785911960085,5.04419836959365,6.312121671319,29.2725292686899,32.4690161724536,31.6487107467127,37.6359381249951,38.6631372564496,33.9387655363627,23.4377674757074,30.163261688902,37.0566058508288,19.5079840283727,17.7102250588156,32.18908012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| |||
|short_description=p1@NADK | |||
}} |
Revision as of 15:50, 10 January 2014
Short description: | p1@NADK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NADK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000341426, ENST00000344463, ENST00000460602, ENST00000464373, ENST00000492768, NM_023018, uc001aic.2, uc009vkw.2_5end |
EntrezGene: | NADK |
HGNC: | 29831 |
UniProt: | O95544Q5QPS4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.13e-14 | 250 |
meso-epithelial cell | 3.20e-11 | 45 |
mesodermal cell | 4.13e-11 | 121 |
epithelial cell | 4.54e-10 | 253 |
endothelial cell | 2.20e-09 | 36 |
lining cell | 4.05e-08 | 58 |
barrier cell | 4.05e-08 | 58 |
endothelial cell of vascular tree | 1.04e-07 | 24 |
blood vessel endothelial cell | 1.20e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.20e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 2.05e-13 | 117 |
trunk | 2.56e-11 | 199 |
vasculature | 2.06e-10 | 78 |
vascular system | 2.06e-10 | 78 |
mesenchyme | 2.08e-10 | 160 |
entire embryonic mesenchyme | 2.08e-10 | 160 |
cell layer | 3.76e-09 | 309 |
vessel | 4.22e-09 | 68 |
unilaminar epithelium | 4.75e-09 | 148 |
subdivision of trunk | 5.28e-09 | 112 |
splanchnic layer of lateral plate mesoderm | 5.29e-09 | 83 |
epithelium | 8.09e-09 | 306 |
abdominal segment of trunk | 1.64e-08 | 60 |
abdomen | 1.64e-08 | 60 |
epithelial tube open at both ends | 2.69e-08 | 59 |
blood vessel | 2.69e-08 | 59 |
blood vasculature | 2.69e-08 | 59 |
vascular cord | 2.69e-08 | 59 |
trunk mesenchyme | 2.88e-08 | 122 |
blood vessel endothelium | 1.20e-07 | 18 |
endothelium | 1.20e-07 | 18 |
cardiovascular system endothelium | 1.20e-07 | 18 |
abdomen element | 1.34e-07 | 54 |
abdominal segment element | 1.34e-07 | 54 |
trunk region element | 4.23e-07 | 101 |
squamous epithelium | 4.41e-07 | 25 |
parenchyma | 6.17e-07 | 15 |