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MCL coexpression mm9:180: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001962!1.68e-58!2;UBERON:0001961!1.68e-58!2;UBERON:0001744!1.68e-58!2;UBERON:0002465!1.70e-39!3;UBERON:0003199!5.62e-30!1;UBERON:0000344!2.29e-18!15;UBERON:0004923!6.63e-12!24;UBERON:0000331!7.15e-11!3;UBERON:0002116!7.15e-11!3;UBERON:0001204!7.15e-11!3;UBERON:0001168!7.15e-11!3;UBERON:0002108!1.73e-08!4
|tfbs_overrepresentation_for_novel_motifs=0.0569209,0.00158397,0.00868776,0.654702,1.55956,0.701911,0.0415519,1.55009,0.204689,0.000496431,0.0301666,0.347223,0.00716854,0.17213,1.05499,0,0.123427,1.83521,0.0816596,0.285941,0.195275,0.0132612,0.044855,0.091433,0.0479327,0.0537714,0.212578,0.0244728,0.0208963,0.261601,0.0946732,0.53061,0.0824506,0.0223066,0.00223005,0.000248613,0.00113006,0.615882,0.502433,0.0121668,0.924036,0.0226804,0.629705,0.0482909,0.00281862,0.0739797,0.0861863,0.0278535,1.369,0.153708,0.114713,0.0630516,0.0925623,0.272137,0.284509,0.0472863,1.32552,0.0348544,0.111769,0.0466633,0.167705,0.0665015,0.236544,0.109253,0.189448,0.129466,0.387195,0.685311,0.164992,0.554935,0.00689273,0.112978,7.47052e-06,1.50537,0.000529796,0.141008,0.15875,0.0814172,0.477329,0.361521,0.0250434,0.132391,0.867578,0.165624,0.22823,8.55967e-10,0.208778,0.0125777,0.0882841,0.834473,0.44325,0.231522,0.187284,1.97533,0.00491469,0.0391885,0.769823,0.189,0.0862949,0.00218248,1.39108,1.0163,0.259972,0.115004,0.114487,0.0225942,0.145492,0.273317,0.00615115,0.00558246,0.145387,0.261207,0.364414,0.128103,0.449032,0.0869218,9.60502e-06,0.0184999,0.124089,0.585303,0.840592,0.671317,0.772271,0.0810434,0.494082,0.159938,0.38195,0.18317,0.385999,0.042666,0.693548,0.381781,0.362914,0.191891,0.466876,0.0124404,0.16327,0.461884,0.426528,1.18621,0.804813,0.390916,0.464943,0.185862,0.111335,0.459628,0.614351,1.14775,0.556463,0.00169761,0.00126447,1.51813e-07,0.273242,0.0430839,0.424908,0.332828,0.847158,1.817,0.150589,0.0127383,0.434255,0.645414,1.49847,0.142863,0.719032,0.183852,0.00776605,0.621214,3.67731e-06
|tfbs_overrepresentation_jaspar=MA0003.1;1.17421e-11,MA0004.1;0.0810616,MA0006.1;0.00204893,MA0007.1;0.186946,MA0009.1;0.195679,MA0014.1;2.44122e-09,MA0017.1;0.0612296,MA0019.1;0.321271,MA0024.1;0.169279,MA0025.1;2.54033,MA0027.1;1.6764,MA0028.1;0.00244831,MA0029.1;0.47471,MA0030.1;0.483961,MA0031.1;0.856006,MA0038.1;0.438851,MA0040.1;1.74538,MA0041.1;3.03445,MA0042.1;2.89065,MA0043.1;0.718884,MA0046.1;0.623844,MA0048.1;0.00698891,MA0050.1;0.261334,MA0051.1;0.45551,MA0052.1;0.600468,MA0055.1;0.913855,MA0056.1;0,MA0057.1;0.00472403,MA0058.1;0.0337016,MA0059.1;0.232552,MA0060.1;0.0126484,MA0061.1;0.961082,MA0063.1;0,MA0066.1;0.418711,MA0067.1;0.447985,MA0068.1;6.68821e-05,MA0069.1;1.13302,MA0070.1;0.202696,MA0071.1;0.782474,MA0072.1;0.573652,MA0073.1;1.1813e-14,MA0074.1;0.154659,MA0076.1;0.0042415,MA0077.1;0.541586,MA0078.1;0.518995,MA0081.1;0.472694,MA0083.1;2.03996,MA0084.1;0.734341,MA0087.1;0.649874,MA0088.1;0.000851547,MA0089.1;0,MA0090.1;0.830171,MA0091.1;1.03068,MA0092.1;0.831457,MA0093.1;0.0559557,MA0095.1;0,MA0098.1;0,MA0100.1;0.0364478,MA0101.1;1.29692,MA0103.1;0.466872,MA0105.1;0.0446549,MA0106.1;0.071535,MA0107.1;1.5739,MA0108.2;0.710151,MA0109.1;0,MA0111.1;0.592646,MA0113.1;0.220239,MA0114.1;0.0207239,MA0115.1;0.261216,MA0116.1;0.106676,MA0117.1;0.239187,MA0119.1;0.0081763,MA0122.1;0.703597,MA0124.1;0.40487,MA0125.1;1.64086,MA0130.1;0,MA0131.1;0.095166,MA0132.1;0,MA0133.1;0,MA0135.1;0.777533,MA0136.1;0.390071,MA0139.1;0.0202047,MA0140.1;0.335937,MA0141.1;0.334648,MA0142.1;4.95545,MA0143.1;0.510996,MA0144.1;0.218278,MA0145.1;0.00379962,MA0146.1;7.00812e-07,MA0147.1;0.0264618,MA0148.1;1.4348,MA0149.1;0.008672,MA0062.2;0.00245895,MA0035.2;0.620018,MA0039.2;1.4388e-09,MA0138.2;0.0916474,MA0002.2;2.90904,MA0137.2;0.0270766,MA0104.2;0.000262791,MA0047.2;1.6414,MA0112.2;0.0203088,MA0065.2;0.00955655,MA0150.1;0.365946,MA0151.1;0,MA0152.1;0.437632,MA0153.1;0.296875,MA0154.1;0.00650202,MA0155.1;0.00242529,MA0156.1;0.166361,MA0157.1;0.750478,MA0158.1;0,MA0159.1;0.15731,MA0160.1;0.442619,MA0161.1;0,MA0162.1;5.23675e-09,MA0163.1;2.09946e-07,MA0164.1;0.0453826,MA0080.2;0.0651063,MA0018.2;0.0483351,MA0099.2;1.03989,MA0079.2;0,MA0102.2;0.782545,MA0258.1;0.180944,MA0259.1;0.000805871,MA0442.1;0
}}

Latest revision as of 14:50, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:42881914..42881920,+p@chr11:42881914..42881920
+
Mm9::chr12:114503281..114503293,-p1@uc007pgh.1
Mm9::chr12:114503343..114503358,-p2@uc007pgh.1
Mm9::chr12:114545296..114545316,-p2@uc007pgn.1
Mm9::chr12:115117765..115117769,-p1@LOC641221
Mm9::chr12:115203076..115203085,-p1@ENSMUST00000103478
Mm9::chr12:115366227..115366256,-p@chr12:115366227..115366256
-
Mm9::chr12:115645236..115645244,-p@chr12:115645236..115645244
-
Mm9::chr12:115694343..115694368,-p1@uc007pgz.1
Mm9::chr12:115885265..115885268,-p1@ENSMUST00000103501
Mm9::chr12:115974938..115974945,-p@chr12:115974938..115974945
-
Mm9::chr12:115979100..115979103,-p@chr12:115979100..115979103
-
Mm9::chr12:116048114..116048120,-p@chr12:116048114..116048120
-
Mm9::chr12:116051009..116051016,-p@chr12:116051009..116051016
-
Mm9::chr12:116842622..116842643,-p1@ENSMUST00000103538
Mm9::chr12:117248348..117248352,-p1@uc011yvj.1
Mm9::chr13:3994607..3994611,+p@chr13:3994607..3994611
+
Mm9::chr14:120893824..120893825,+p@chr14:120893824..120893825
+
Mm9::chr16:15705318..15705342,+p@chr16:15705318..15705342
+
Mm9::chr16:95514708..95514717,+p@chr16:95514708..95514717
+
Mm9::chr17:59564142..59564144,+p@chr17:59564142..59564144
+
Mm9::chr17:88262759..88262764,+p@chr17:88262759..88262764
+
Mm9::chr19:31038353..31038362,+p@chr19:31038353..31038362
+
Mm9::chr19:32143293..32143302,-p@chr19:32143293..32143302
-
Mm9::chr19:32143313..32143326,-p@chr19:32143313..32143326
-
Mm9::chr19:32143349..32143352,-p@chr19:32143349..32143352
-
Mm9::chr19:32144164..32144171,-p@chr19:32144164..32144171
-
Mm9::chr19:38060099..38060102,+p@chr19:38060099..38060102
+
Mm9::chr1:40599802..40599815,+p@chr1:40599802..40599815
+
Mm9::chr1:40599829..40599836,+p@chr1:40599829..40599836
+
Mm9::chr2:14201203..14201212,+p@chr2:14201203..14201212
+
Mm9::chr2:38474885..38474891,-p@chr2:38474885..38474891
-
Mm9::chr2:45535559..45535562,+p@chr2:45535559..45535562
+
Mm9::chr2:63059909..63059910,+p@chr2:63059909..63059910
+
Mm9::chr3:146041906..146041910,-p1@Gm10636
Mm9::chr5:41641845..41641846,+p@chr5:41641845..41641846
+
Mm9::chr6:143591339..143591345,+p@chr6:143591339..143591345
+
Mm9::chr6:67863544..67863551,+p1@ENSMUST00000103311
Mm9::chr6:69701328..69701342,-p1@ENSMUST00000114212
Mm9::chr6:69714657..69714683,-p@chr6:69714657..69714683
-
Mm9::chr6:69715003..69715045,-p1@ENSMUST00000103365
Mm9::chr6:69726327..69726336,-p1@ENSMUST00000103366
Mm9::chr6:69785263..69785268,-p@chr6:69785263..69785268
-
Mm9::chr6:69893682..69893694,-p1@ENSMUST00000103371
Mm9::chr6:92256099..92256107,+p@chr6:92256099..92256107
+
Mm9::chr7:18830551..18830565,+p1@Mill1
Mm9::chr8:23117055..23117056,-p@chr8:23117055..23117056
-
Mm9::chr8:24347491..24347492,+p@chr8:24347491..24347492
+
Mm9::chr8:25523566..25523573,+p@chr8:25523566..25523573
+
Mm9::chr9:23111153..23111161,+p@chr9:23111153..23111161
+
Mm9::chr9:69086930..69086933,+p@chr9:69086930..69086933
+
Mm9::chr9:7628200..7628204,+p1@Mmp20
Mm9::chr9:7661364..7661367,-p@chr9:7661364..7661367
-
Mm9::chr9:84127758..84127761,+p@chr9:84127758..84127761
+
Mm9::chrX:130394230..130394245,+p@chrX:130394230..130394245
+
Mm9::chrX:84015807..84015814,+p@chrX:84015807..84015814
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gut-associated lymphoid tissue1.68e-582
mucosa-associated lymphoid tissue1.68e-582
lymphoid tissue1.68e-582
lymphoid system1.70e-393
egg chamber5.62e-301
mucosa2.29e-1815
organ component layer6.63e-1224
ileal mucosa7.15e-113
ileum7.15e-113
mucosa of small intestine7.15e-113
wall of small intestine7.15e-113
small intestine1.73e-084


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.17421e-11
MA0004.10.0810616
MA0006.10.00204893
MA0007.10.186946
MA0009.10.195679
MA0014.12.44122e-09
MA0017.10.0612296
MA0019.10.321271
MA0024.10.169279
MA0025.12.54033
MA0027.11.6764
MA0028.10.00244831
MA0029.10.47471
MA0030.10.483961
MA0031.10.856006
MA0038.10.438851
MA0040.11.74538
MA0041.13.03445
MA0042.12.89065
MA0043.10.718884
MA0046.10.623844
MA0048.10.00698891
MA0050.10.261334
MA0051.10.45551
MA0052.10.600468
MA0055.10.913855
MA0056.10
MA0057.10.00472403
MA0058.10.0337016
MA0059.10.232552
MA0060.10.0126484
MA0061.10.961082
MA0063.10
MA0066.10.418711
MA0067.10.447985
MA0068.16.68821e-05
MA0069.11.13302
MA0070.10.202696
MA0071.10.782474
MA0072.10.573652
MA0073.11.1813e-14
MA0074.10.154659
MA0076.10.0042415
MA0077.10.541586
MA0078.10.518995
MA0081.10.472694
MA0083.12.03996
MA0084.10.734341
MA0087.10.649874
MA0088.10.000851547
MA0089.10
MA0090.10.830171
MA0091.11.03068
MA0092.10.831457
MA0093.10.0559557
MA0095.10
MA0098.10
MA0100.10.0364478
MA0101.11.29692
MA0103.10.466872
MA0105.10.0446549
MA0106.10.071535
MA0107.11.5739
MA0108.20.710151
MA0109.10
MA0111.10.592646
MA0113.10.220239
MA0114.10.0207239
MA0115.10.261216
MA0116.10.106676
MA0117.10.239187
MA0119.10.0081763
MA0122.10.703597
MA0124.10.40487
MA0125.11.64086
MA0130.10
MA0131.10.095166
MA0132.10
MA0133.10
MA0135.10.777533
MA0136.10.390071
MA0139.10.0202047
MA0140.10.335937
MA0141.10.334648
MA0142.14.95545
MA0143.10.510996
MA0144.10.218278
MA0145.10.00379962
MA0146.17.00812e-07
MA0147.10.0264618
MA0148.11.4348
MA0149.10.008672
MA0062.20.00245895
MA0035.20.620018
MA0039.21.4388e-09
MA0138.20.0916474
MA0002.22.90904
MA0137.20.0270766
MA0104.20.000262791
MA0047.21.6414
MA0112.20.0203088
MA0065.20.00955655
MA0150.10.365946
MA0151.10
MA0152.10.437632
MA0153.10.296875
MA0154.10.00650202
MA0155.10.00242529
MA0156.10.166361
MA0157.10.750478
MA0158.10
MA0159.10.15731
MA0160.10.442619
MA0161.10
MA0162.15.23675e-09
MA0163.12.09946e-07
MA0164.10.0453826
MA0080.20.0651063
MA0018.20.0483351
MA0099.21.03989
MA0079.20
MA0102.20.782545
MA0258.10.180944
MA0259.10.000805871
MA0442.10
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