FFCP PHASE1:Mm9::chrX:166435044..166435053,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chrX:166435044..166435053,-|id=chrX:166435044..166435053,-|ontology_enrichment_celltype=CL:0000838!9.58e-11!12;CL:0000084!6.60e-10!11;CL:0000827!6.60e-10!11;CL:0000542!1.45e-09!13;CL:0000051!1.45e-09!13;CL:0000791!1.42e-08!9;CL:0000789!1.42e-08!9;CL:0002420!1.42e-08!9;CL:0002419!1.42e-08!9;CL:0000790!1.42e-08!9;CL:0000624!1.19e-07!8|ontology_enrichment_celltype_v019_2=CL:0000682,2.07e-14,3;CL:0000838,8.51e-14,12;CL:0000239,1.87e-13,6;CL:0000677,1.87e-13,6;CL:0000584,1.87e-13,6;CL:0000791,2.68e-13,9;CL:0000789,2.68e-13,9;CL:0002420,2.68e-13,9;CL:0002419,2.68e-13,9;CL:0000790,2.68e-13,9;CL:0000542,1.06e-12,13;CL:0000051,1.06e-12,13;CL:0000075,1.48e-11,7;CL:0000084,7.47e-11,11;CL:0000827,7.47e-11,11;CL:0000624,6.75e-10,8;CL:0000738,1.31e-09,17;CL:0002087,1.31e-09,17;CL:0002563,5.14e-09,9;CL:0002251,5.14e-09,9;CL:0000066,1.07e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002465,2.30e-14,3;UBERON:0000344,3.79e-11,15;UBERON:0001962,4.69e-10,2;UBERON:0001961,4.69e-10,2;UBERON:0001744,4.69e-10,2;UBERON:0003350,5.14e-09,9;UBERON:0004808,5.14e-09,9;UBERON:0001277,5.14e-09,9;UBERON:0000485,2.15e-07,11;UBERON:0004923,8.78e-07,24|phase1_expression=0,6.63053274514786,8.64498554840118,0.90739263392049,0,1.34303417529512,3.50418960893289,2.32421982194837,1.68946466582,2.34064526321993,0.513653904676515,0.239316476986009,0.513602189793617,0.786783621770977,0,0,0,0,0,0,0,0.397163804803541,0.783599367416806,1.27993938234725,1.37645568640302,1.14846392823004,1.29228598847722,2.37018355954478,0,0,0,0,0,0,0,0,0.816677425049476,0,0.7813353445238,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00669563634642,2.90144856804538,2.01656279485478,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869593466105033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0,1.55362730188303,0,0,0,0,0,0,0.125666591329675,0,0.144599356919912,0.884610551949874,0,0.220841518460394,0,0,0,0,0,0.359445373517761,0,0.127070227073065,0,0.457500602818626,0.251308704225729,0,0,0.20778804455956,0.162241263067758,0,0.622034853050465,0,0.210441855886474,0.130120442962704,0,0,0.150704817835715,0.0680364991513279,0.2562274405697,0.281105173679186,0.258703370739016,0,0,0,0,0,0.696504333044333,0.205782136407943,0,0,0.257347907114715,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0.146199987425332,0.219550115291051,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0.329397909448022,0,0.198956472041151,0,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87536413054709,0.372140947668503,0,0,0,0.482443521363367,0.184753190166605,0,0,0,0.234690248288502,0,0.238043640886014,0,0,0,0.318909537314974,0,0,0.578596234326046,0,0,0,0.551873492609465,0.160550589987792,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0.321321316421807,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0.363533729477506,0,0,1.05418608574999,0,0.340439605753788,0,0,0,0,0.178368817602071,0,0,0.469343416127421,0,0,0.8244312647074,0.322928853391811,0.241251699712623,0.238744688006273,0.328281799490123,0,0,0.170870880797853,0.206386867963223,0,0.188368457004691,0,0,0,0.419854356970974,0,0,0,0,0.108005340821801,0.209088296014469,0,0.134864346384821,0.330613822901344,0,0.259229946583586,0.621339313086926,0,0,0.165458490457098,0.194451188344048,0.129159823477731,0,0.234714477291508,0,0.209718688851422,0,0,1.26404448251271,0,0,0.129920822977795,0,0,0.721172697119813,0.590758108698309,0.504832249740738,0.838274873204998,0.403304740547362,0.292373642219257,0.384847366561318,0,0,0,0.0897138566094757,0,0.386379188064381,0.375364950902364,0.73260649706906,0,0,0,0,0.572895513439397,0.343706364687375,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0.25347929989024,0.377252682772152,0.0936415074698824,0,0.114870937911227,0.476293691283074,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0.271608227691724,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0,0,0.214871054048298,0,0,0.231867835620421|short_description=p@chrX:166435044..166435053,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chrX:166435044..166435053,- | |||
|id=chrX:166435044..166435053,- | |||
|ontology_enrichment_celltype=CL:0000838!9.58e-11!12;CL:0000084!6.60e-10!11;CL:0000827!6.60e-10!11;CL:0000542!1.45e-09!13;CL:0000051!1.45e-09!13;CL:0000791!1.42e-08!9;CL:0000789!1.42e-08!9;CL:0002420!1.42e-08!9;CL:0002419!1.42e-08!9;CL:0000790!1.42e-08!9;CL:0000624!1.19e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.07e-14,3;CL:0000838,8.51e-14,12;CL:0000239,1.87e-13,6;CL:0000677,1.87e-13,6;CL:0000584,1.87e-13,6;CL:0000791,2.68e-13,9;CL:0000789,2.68e-13,9;CL:0002420,2.68e-13,9;CL:0002419,2.68e-13,9;CL:0000790,2.68e-13,9;CL:0000542,1.06e-12,13;CL:0000051,1.06e-12,13;CL:0000075,1.48e-11,7;CL:0000084,7.47e-11,11;CL:0000827,7.47e-11,11;CL:0000624,6.75e-10,8;CL:0000738,1.31e-09,17;CL:0002087,1.31e-09,17;CL:0002563,5.14e-09,9;CL:0002251,5.14e-09,9;CL:0000066,1.07e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002465,2.30e-14,3;UBERON:0000344,3.79e-11,15;UBERON:0001962,4.69e-10,2;UBERON:0001961,4.69e-10,2;UBERON:0001744,4.69e-10,2;UBERON:0003350,5.14e-09,9;UBERON:0004808,5.14e-09,9;UBERON:0001277,5.14e-09,9;UBERON:0000485,2.15e-07,11;UBERON:0004923,8.78e-07,24 | |||
|phase1_expression=0,6.63053274514786,8.64498554840118,0.90739263392049,0,1.34303417529512,3.50418960893289,2.32421982194837,1.68946466582,2.34064526321993,0.513653904676515,0.239316476986009,0.513602189793617,0.786783621770977,0,0,0,0,0,0,0,0.397163804803541,0.783599367416806,1.27993938234725,1.37645568640302,1.14846392823004,1.29228598847722,2.37018355954478,0,0,0,0,0,0,0,0,0.816677425049476,0,0.7813353445238,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00669563634642,2.90144856804538,2.01656279485478,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869593466105033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0,1.55362730188303,0,0,0,0,0,0,0.125666591329675,0,0.144599356919912,0.884610551949874,0,0.220841518460394,0,0,0,0,0,0.359445373517761,0,0.127070227073065,0,0.457500602818626,0.251308704225729,0,0,0.20778804455956,0.162241263067758,0,0.622034853050465,0,0.210441855886474,0.130120442962704,0,0,0.150704817835715,0.0680364991513279,0.2562274405697,0.281105173679186,0.258703370739016,0,0,0,0,0,0.696504333044333,0.205782136407943,0,0,0.257347907114715,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0.146199987425332,0.219550115291051,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0.329397909448022,0,0.198956472041151,0,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87536413054709,0.372140947668503,0,0,0,0.482443521363367,0.184753190166605,0,0,0,0.234690248288502,0,0.238043640886014,0,0,0,0.318909537314974,0,0,0.578596234326046,0,0,0,0.551873492609465,0.160550589987792,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0.321321316421807,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0.363533729477506,0,0,1.05418608574999,0,0.340439605753788,0,0,0,0,0.178368817602071,0,0,0.469343416127421,0,0,0.8244312647074,0.322928853391811,0.241251699712623,0.238744688006273,0.328281799490123,0,0,0.170870880797853,0.206386867963223,0,0.188368457004691,0,0,0,0.419854356970974,0,0,0,0,0.108005340821801,0.209088296014469,0,0.134864346384821,0.330613822901344,0,0.259229946583586,0.621339313086926,0,0,0.165458490457098,0.194451188344048,0.129159823477731,0,0.234714477291508,0,0.209718688851422,0,0,1.26404448251271,0,0,0.129920822977795,0,0,0.721172697119813,0.590758108698309,0.504832249740738,0.838274873204998,0.403304740547362,0.292373642219257,0.384847366561318,0,0,0,0.0897138566094757,0,0.386379188064381,0.375364950902364,0.73260649706906,0,0,0,0,0.572895513439397,0.343706364687375,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0.25347929989024,0.377252682772152,0.0936415074698824,0,0.114870937911227,0.476293691283074,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0.271608227691724,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0,0,0.214871054048298,0,0,0.231867835620421 | |||
|short_description=p@chrX:166435044..166435053,- | |||
}} |
Revision as of 19:41, 14 September 2013
Short description: | p@chrX:166435044..166435053, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chrX:166435044..166435053, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.07e-14 | 3 |
lymphoid lineage restricted progenitor cell | 8.51e-14 | 12 |
brush border epithelial cell | 1.87e-13 | 6 |
gut absorptive cell | 1.87e-13 | 6 |
enterocyte | 1.87e-13 | 6 |
mature alpha-beta T cell | 2.68e-13 | 9 |
alpha-beta T cell | 2.68e-13 | 9 |
immature T cell | 2.68e-13 | 9 |
mature T cell | 2.68e-13 | 9 |
immature alpha-beta T cell | 2.68e-13 | 9 |
lymphocyte | 1.06e-12 | 13 |
common lymphoid progenitor | 1.06e-12 | 13 |
columnar/cuboidal epithelial cell | 1.48e-11 | 7 |
T cell | 7.47e-11 | 11 |
pro-T cell | 7.47e-11 | 11 |
CD4-positive, alpha-beta T cell | 6.75e-10 | 8 |
leukocyte | 1.31e-09 | 17 |
nongranular leukocyte | 1.31e-09 | 17 |
intestinal epithelial cell | 5.14e-09 | 9 |
epithelial cell of alimentary canal | 5.14e-09 | 9 |
epithelial cell | 1.07e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
lymphoid system | 2.30e-14 | 3 |
mucosa | 3.79e-11 | 15 |
gut-associated lymphoid tissue | 4.69e-10 | 2 |
mucosa-associated lymphoid tissue | 4.69e-10 | 2 |
lymphoid tissue | 4.69e-10 | 2 |
epithelium of mucosa | 5.14e-09 | 9 |
gastrointestinal system epithelium | 5.14e-09 | 9 |
intestinal epithelium | 5.14e-09 | 9 |
simple columnar epithelium | 2.15e-07 | 11 |
organ component layer | 8.78e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.