FFCP PHASE1:Mm9::chr7:52899323..52899336,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74490|HGNC=|UniProt=F6XRP9|association_with_transcript=-417bp_to_ENSMUST00000151039_5end|description=CAGE_peak_4_at_Mamstr_5end|id=chr7:52899323..52899336,+|ontology_enrichment_celltype=CL:0000221!4.62e-11!44;CL:0000133!4.62e-11!44;CL:0002319!8.92e-11!43;CL:0000540!1.96e-09!33;CL:0000047!1.96e-09!33;CL:0000031!1.96e-09!33;CL:0000404!1.96e-09!33;CL:0000055!1.46e-07!50|ontology_enrichment_celltype_v019_2=CL:0002319,1.04e-09,43;CL:0000540,1.10e-09,33;CL:0000047,1.10e-09,33;CL:0000031,1.10e-09,33;CL:0000404,1.10e-09,33;CL:0000221,2.04e-09,44;CL:0000133,2.04e-09,44;CL:0000120,6.62e-08,3;CL:0000393,8.58e-08,39;CL:0000211,8.58e-08,39;CL:0000107,6.24e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.08e-19!102;UBERON:0000924!3.08e-19!102;UBERON:0006601!3.08e-19!102;UBERON:0000073!1.15e-14!75;UBERON:0001016!1.15e-14!75;UBERON:0002346!2.37e-14!71;UBERON:0003075!2.37e-14!71;UBERON:0007284!2.37e-14!71;UBERON:0001017!6.28e-14!73;UBERON:0005743!6.28e-14!73;UBERON:0000033!1.77e-12!63;UBERON:0002616!5.82e-10!49;UBERON:0003056!1.46e-09!49;UBERON:0000955!2.16e-09!50;UBERON:0006238!2.16e-09!50;UBERON:0001049!7.49e-08!52;UBERON:0005068!7.49e-08!52;UBERON:0006241!7.49e-08!52;UBERON:0007135!7.49e-08!52;UBERON:0000153!1.42e-07!94;UBERON:0007811!3.32e-07!86;UBERON:0000007!6.70e-07!8;UBERON:0003296!6.70e-07!8;UBERON:0010133!6.70e-07!8;UBERON:0003080!8.37e-07!40;UBERON:0002780!9.20e-07!39;UBERON:0001890!9.20e-07!39;UBERON:0006240!9.20e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0000007,7.92e-21,8;UBERON:0003296,7.92e-21,8;UBERON:0010133,7.92e-21,8;UBERON:0001016,3.21e-19,75;UBERON:0001017,4.49e-18,73;UBERON:0004121,8.35e-17,95;UBERON:0000924,8.35e-17,95;UBERON:0006601,8.35e-17,95;UBERON:0001894,2.24e-16,10;UBERON:0006222,2.24e-16,10;UBERON:0000073,8.05e-10,54;UBERON:0002616,2.48e-09,46;UBERON:0002346,4.54e-09,64;UBERON:0003075,4.54e-09,64;UBERON:0007284,4.54e-09,64;UBERON:0000955,4.60e-09,47;UBERON:0006238,4.60e-09,47;UBERON:0003056,1.58e-08,49;UBERON:0000011,2.25e-08,3;UBERON:0002780,2.49e-08,39;UBERON:0001890,2.49e-08,39;UBERON:0006240,2.49e-08,39;UBERON:0003080,4.70e-08,40;UBERON:0000010,5.29e-08,11;UBERON:0001049,7.01e-08,52;UBERON:0005068,7.01e-08,52;UBERON:0006241,7.01e-08,52;UBERON:0007135,7.01e-08,52;UBERON:0010371,1.84e-07,73;UBERON:0002410,6.24e-07,9|phase1_expression=0.320297694209588,0,0,0,0,0.671517087647559,0.700837921786577,0.903863264091034,0.140788722151667,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0.157731082679119,0.137114433605739,0.42438965179803,0.510259740906419,0,0,0.159992422793407,0,0,0.430761996159075,0.215471232685889,0.190023419456374,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0.588231488031014,0.683045484958446,0.485510353031154,0,0.101376931219515,0.183546752161682,0.782391344348039,0.436050312760893,0.659058548203415,0.194429899074283,0.279972843250725,2.87505128729943,0.167782606057736,0,0,0,0,0,1.01158230429799,2.11596391708813,1.26766280701236,0,0,0,0,0,0.299600110518405,0,0.414758449233911,0.810035629990144,1.05162480675691,0,0.220868540951614,1.22490799214954,0.862609239164127,0,1.10115880999389,0.383062014255563,1.0752457327937,0.923204014111357,0.914876436024097,1.04182674111352,0.837548997004143,0.56276261003168,0.30559649555362,0,0.284743361598206,0.186399445825301,0.37863096666592,2.34271836331035,0.579728977403356,0,0,0,0,0,0.280888840263504,0,0,0,0.563373679106722,0,0,0,0,0,0,0,0.258937883647172,1.63286352971307,0.346970653532272,0.913396434936424,0.691846491768175,0.753613202763113,0.705532242814229,0.628332956648377,0,0,0,0,0,0,0,1.75668478206928,2.72280718857492,0,0.239630249011841,1.19980546198682,0.127070227073065,0.299581278809645,0.457500602818626,0.502617408451458,1.04294592115366,0.511430914660661,0.41557608911912,0,0.203678727700633,0.497627882440372,0.252722758433675,0.420883711772948,0.390361328888111,1.60931473103431,0.540186389416048,0.753524089178575,0.95251098811859,2.17793324484245,0.937017245597288,0.258703370739016,0.646703978798527,0.567318240503458,0.879755620819744,0.43839146485515,0,0,0.205782136407943,0.796137067273973,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0.154267112887378,0.232533944750408,0,0.116765342367169,0,0.164167464079095,0,0.146199987425332,0,0.134206418760372,0.841159794256509,0.514523061896422,0,0,0.426576501070468,0.464473343720877,0.644337306610467,0,0.667134131534611,0.190225626112559,0,0.494096864172033,0.251335208800269,0,0,0.898819408654221,0.432276099749388,0.199141273254367,1.13800740571849,0.799739588268102,0,0.203651327845314,0.193952487167626,0.350679099451593,0.126473074248515,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.189491411770485,0.162964976442026,0.169745085775188,0.704070744865506,0.335012514883631,0,0,0,0.221464689648775,0.159454768657487,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0,0,0.481651769963376,0.703270119553219,0.163934945376675,0,1.57754109708128,0.780877488593277,0.430846795465598,1.43381278771531,3.56477878531831,1.13230612315533,0.809621403349789,0.584511715822624,1.58115111178609,0,0,0.890328018336276,0,0.824850614862677,0,0.485561272309963,0.906970670894253,0.377210159511796,0.295301892880773,0.614870295887855,0.516856586336442,1.09060118843252,0.712994756769443,0.316036757935816,0,0,2.7235168460303,1.26042765821917,3.23396709456886,1.92903331528433,1.77340233642274,1.96205699362278,1.97458824722545,2.13125464380219,0,0.42366414172764,0,0.32977250588296,0.322928853391811,0.361877549568935,0.119372344003136,0.164140899745061,0,0.370850604021019,0.170870880797853,0.206386867963223,0,0,0,0,0,0,0.138199973804424,0,0.632671987162271,0,0.540026704109006,0.209088296014469,0.218362563746178,0.404593039154462,0.247960367176008,0,0.388844919875379,0,0,0.299033092087958,0.66183396182839,0.388902376688095,0,0,0,0.39061315453185,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0.513554785824136,0.129920822977795,0,0.198681354781265,0,0.147689527174577,0.100966449948148,0.15241361331,0.100826185136841,0,0.288635524920988,0.467507608726276,0.680191150845634,0,0,0,0,0.375364950902364,0.549454872801795,0,2.50786052017682,0,0,0,0.515559547031063,0,0,0,1.35096360967266,0.453142408984205,0,0.62272408550506,1.59609949360412,1.36586884603307,0.729320151204882,0,0.183843508450014,0,0,0.320919209591815,0.505394423527595,0,0.188626341386076,0.280924522409647,0.0640251524048693,0.229741875822453,0,0.579421629724277,0.192909220463705,0.412085900803307,0.294397840268795,0,0,0.476872379894642,0.290692833264657,0.0941093804153306,0.0846146078916765,0.365855945745545,0.263069711437843,0.135804113845862,0,0.593175090620871,0.197008964751127,0.409231043169689,0.309873682371932,0,0.499621155875892,0.467863216890817,0.214871054048298,0.191288332068843,0,0.463735671240843|short_description=p4@Mamstr}} | ||
|EntrezGene=74490 | |||
|HGNC= | |||
|UniProt=F6XRP9 | |||
|association_with_transcript=-417bp_to_ENSMUST00000151039_5end | |||
|description=CAGE_peak_4_at_Mamstr_5end | |||
|id=chr7:52899323..52899336,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.62e-11!44;CL:0000133!4.62e-11!44;CL:0002319!8.92e-11!43;CL:0000540!1.96e-09!33;CL:0000047!1.96e-09!33;CL:0000031!1.96e-09!33;CL:0000404!1.96e-09!33;CL:0000055!1.46e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.04e-09,43;CL:0000540,1.10e-09,33;CL:0000047,1.10e-09,33;CL:0000031,1.10e-09,33;CL:0000404,1.10e-09,33;CL:0000221,2.04e-09,44;CL:0000133,2.04e-09,44;CL:0000120,6.62e-08,3;CL:0000393,8.58e-08,39;CL:0000211,8.58e-08,39;CL:0000107,6.24e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.08e-19!102;UBERON:0000924!3.08e-19!102;UBERON:0006601!3.08e-19!102;UBERON:0000073!1.15e-14!75;UBERON:0001016!1.15e-14!75;UBERON:0002346!2.37e-14!71;UBERON:0003075!2.37e-14!71;UBERON:0007284!2.37e-14!71;UBERON:0001017!6.28e-14!73;UBERON:0005743!6.28e-14!73;UBERON:0000033!1.77e-12!63;UBERON:0002616!5.82e-10!49;UBERON:0003056!1.46e-09!49;UBERON:0000955!2.16e-09!50;UBERON:0006238!2.16e-09!50;UBERON:0001049!7.49e-08!52;UBERON:0005068!7.49e-08!52;UBERON:0006241!7.49e-08!52;UBERON:0007135!7.49e-08!52;UBERON:0000153!1.42e-07!94;UBERON:0007811!3.32e-07!86;UBERON:0000007!6.70e-07!8;UBERON:0003296!6.70e-07!8;UBERON:0010133!6.70e-07!8;UBERON:0003080!8.37e-07!40;UBERON:0002780!9.20e-07!39;UBERON:0001890!9.20e-07!39;UBERON:0006240!9.20e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,7.92e-21,8;UBERON:0003296,7.92e-21,8;UBERON:0010133,7.92e-21,8;UBERON:0001016,3.21e-19,75;UBERON:0001017,4.49e-18,73;UBERON:0004121,8.35e-17,95;UBERON:0000924,8.35e-17,95;UBERON:0006601,8.35e-17,95;UBERON:0001894,2.24e-16,10;UBERON:0006222,2.24e-16,10;UBERON:0000073,8.05e-10,54;UBERON:0002616,2.48e-09,46;UBERON:0002346,4.54e-09,64;UBERON:0003075,4.54e-09,64;UBERON:0007284,4.54e-09,64;UBERON:0000955,4.60e-09,47;UBERON:0006238,4.60e-09,47;UBERON:0003056,1.58e-08,49;UBERON:0000011,2.25e-08,3;UBERON:0002780,2.49e-08,39;UBERON:0001890,2.49e-08,39;UBERON:0006240,2.49e-08,39;UBERON:0003080,4.70e-08,40;UBERON:0000010,5.29e-08,11;UBERON:0001049,7.01e-08,52;UBERON:0005068,7.01e-08,52;UBERON:0006241,7.01e-08,52;UBERON:0007135,7.01e-08,52;UBERON:0010371,1.84e-07,73;UBERON:0002410,6.24e-07,9 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0.671517087647559,0.700837921786577,0.903863264091034,0.140788722151667,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0.157731082679119,0.137114433605739,0.42438965179803,0.510259740906419,0,0,0.159992422793407,0,0,0.430761996159075,0.215471232685889,0.190023419456374,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0.588231488031014,0.683045484958446,0.485510353031154,0,0.101376931219515,0.183546752161682,0.782391344348039,0.436050312760893,0.659058548203415,0.194429899074283,0.279972843250725,2.87505128729943,0.167782606057736,0,0,0,0,0,1.01158230429799,2.11596391708813,1.26766280701236,0,0,0,0,0,0.299600110518405,0,0.414758449233911,0.810035629990144,1.05162480675691,0,0.220868540951614,1.22490799214954,0.862609239164127,0,1.10115880999389,0.383062014255563,1.0752457327937,0.923204014111357,0.914876436024097,1.04182674111352,0.837548997004143,0.56276261003168,0.30559649555362,0,0.284743361598206,0.186399445825301,0.37863096666592,2.34271836331035,0.579728977403356,0,0,0,0,0,0.280888840263504,0,0,0,0.563373679106722,0,0,0,0,0,0,0,0.258937883647172,1.63286352971307,0.346970653532272,0.913396434936424,0.691846491768175,0.753613202763113,0.705532242814229,0.628332956648377,0,0,0,0,0,0,0,1.75668478206928,2.72280718857492,0,0.239630249011841,1.19980546198682,0.127070227073065,0.299581278809645,0.457500602818626,0.502617408451458,1.04294592115366,0.511430914660661,0.41557608911912,0,0.203678727700633,0.497627882440372,0.252722758433675,0.420883711772948,0.390361328888111,1.60931473103431,0.540186389416048,0.753524089178575,0.95251098811859,2.17793324484245,0.937017245597288,0.258703370739016,0.646703978798527,0.567318240503458,0.879755620819744,0.43839146485515,0,0,0.205782136407943,0.796137067273973,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0.154267112887378,0.232533944750408,0,0.116765342367169,0,0.164167464079095,0,0.146199987425332,0,0.134206418760372,0.841159794256509,0.514523061896422,0,0,0.426576501070468,0.464473343720877,0.644337306610467,0,0.667134131534611,0.190225626112559,0,0.494096864172033,0.251335208800269,0,0,0.898819408654221,0.432276099749388,0.199141273254367,1.13800740571849,0.799739588268102,0,0.203651327845314,0.193952487167626,0.350679099451593,0.126473074248515,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.189491411770485,0.162964976442026,0.169745085775188,0.704070744865506,0.335012514883631,0,0,0,0.221464689648775,0.159454768657487,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0,0,0.481651769963376,0.703270119553219,0.163934945376675,0,1.57754109708128,0.780877488593277,0.430846795465598,1.43381278771531,3.56477878531831,1.13230612315533,0.809621403349789,0.584511715822624,1.58115111178609,0,0,0.890328018336276,0,0.824850614862677,0,0.485561272309963,0.906970670894253,0.377210159511796,0.295301892880773,0.614870295887855,0.516856586336442,1.09060118843252,0.712994756769443,0.316036757935816,0,0,2.7235168460303,1.26042765821917,3.23396709456886,1.92903331528433,1.77340233642274,1.96205699362278,1.97458824722545,2.13125464380219,0,0.42366414172764,0,0.32977250588296,0.322928853391811,0.361877549568935,0.119372344003136,0.164140899745061,0,0.370850604021019,0.170870880797853,0.206386867963223,0,0,0,0,0,0,0.138199973804424,0,0.632671987162271,0,0.540026704109006,0.209088296014469,0.218362563746178,0.404593039154462,0.247960367176008,0,0.388844919875379,0,0,0.299033092087958,0.66183396182839,0.388902376688095,0,0,0,0.39061315453185,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0.513554785824136,0.129920822977795,0,0.198681354781265,0,0.147689527174577,0.100966449948148,0.15241361331,0.100826185136841,0,0.288635524920988,0.467507608726276,0.680191150845634,0,0,0,0,0.375364950902364,0.549454872801795,0,2.50786052017682,0,0,0,0.515559547031063,0,0,0,1.35096360967266,0.453142408984205,0,0.62272408550506,1.59609949360412,1.36586884603307,0.729320151204882,0,0.183843508450014,0,0,0.320919209591815,0.505394423527595,0,0.188626341386076,0.280924522409647,0.0640251524048693,0.229741875822453,0,0.579421629724277,0.192909220463705,0.412085900803307,0.294397840268795,0,0,0.476872379894642,0.290692833264657,0.0941093804153306,0.0846146078916765,0.365855945745545,0.263069711437843,0.135804113845862,0,0.593175090620871,0.197008964751127,0.409231043169689,0.309873682371932,0,0.499621155875892,0.467863216890817,0.214871054048298,0.191288332068843,0,0.463735671240843 | |||
|short_description=p4@Mamstr | |||
}} |
Revision as of 13:47, 14 September 2013
Short description: | p4@Mamstr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Mamstr_5end |
Coexpression cluster: | NA |
Association with transcript: | -417bp_to_ENSMUST00000151039_5end |
EntrezGene: | Mamstr |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.04e-09 | 43 |
neuron | 1.10e-09 | 33 |
neuronal stem cell | 1.10e-09 | 33 |
neuroblast | 1.10e-09 | 33 |
electrically signaling cell | 1.10e-09 | 33 |
ectodermal cell | 2.04e-09 | 44 |
neurectodermal cell | 2.04e-09 | 44 |
granule cell | 6.62e-08 | 3 |
electrically responsive cell | 8.58e-08 | 39 |
electrically active cell | 8.58e-08 | 39 |
autonomic neuron | 6.24e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 7.92e-21 | 8 |
gland of diencephalon | 7.92e-21 | 8 |
neuroendocrine gland | 7.92e-21 | 8 |
nervous system | 3.21e-19 | 75 |
central nervous system | 4.49e-18 | 73 |
ectoderm-derived structure | 8.35e-17 | 95 |
ectoderm | 8.35e-17 | 95 |
presumptive ectoderm | 8.35e-17 | 95 |
diencephalon | 2.24e-16 | 10 |
future diencephalon | 2.24e-16 | 10 |
regional part of nervous system | 8.05e-10 | 54 |
regional part of brain | 2.48e-09 | 46 |
neurectoderm | 4.54e-09 | 64 |
neural plate | 4.54e-09 | 64 |
presumptive neural plate | 4.54e-09 | 64 |
brain | 4.60e-09 | 47 |
future brain | 4.60e-09 | 47 |
pre-chordal neural plate | 1.58e-08 | 49 |
parasympathetic nervous system | 2.25e-08 | 3 |
regional part of forebrain | 2.49e-08 | 39 |
forebrain | 2.49e-08 | 39 |
future forebrain | 2.49e-08 | 39 |
anterior neural tube | 4.70e-08 | 40 |
peripheral nervous system | 5.29e-08 | 11 |
neural tube | 7.01e-08 | 52 |
neural rod | 7.01e-08 | 52 |
future spinal cord | 7.01e-08 | 52 |
neural keel | 7.01e-08 | 52 |
ecto-epithelium | 1.84e-07 | 73 |
autonomic nervous system | 6.24e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.