FFCP PHASE1:Hg19::chrX:9880874..9880884,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=357|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=630|TSSclassifier=W|UniProt=C9IZC6,B3KU73|association_with_transcript=151bp_to_ENST00000452575,ENST00000540923,uc004csw.1_5end|coexpression_cluster_id=C74|description=CAGE_peak_14_at_SHROOM2_5end|id=chrX:9880874..9880884,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000047;2.45e-40;2!CL:1001319;4.22e-21;1!CL:1000600;4.22e-21;1!CL:0000307;6.34e-08;3!CL:0002319;3.09e-07;25|ontology_enrichment_celltype_v019_2=CL:0000047,5.97e-23,8;CL:1001319,4.22e-21,1;CL:1000600,4.22e-21,1;CL:0000068,7.76e-08,3;CL:0000069,7.76e-08,3;CL:0000307,7.76e-08,3;CL:0000377,7.76e-08,3;CL:0002319,2.96e-07,25|ontology_enrichment_development_v019=CL:0000377;6.34e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.15e-40!82;UBERON:0005743!1.23e-37!86;UBERON:0001049!3.18e-36!57;UBERON:0005068!3.18e-36!57;UBERON:0006241!3.18e-36!57;UBERON:0007135!3.18e-36!57;UBERON:0000073!5.82e-35!94;UBERON:0001016!5.82e-35!94;UBERON:0002780!9.13e-35!41;UBERON:0001890!9.13e-35!41;UBERON:0006240!9.13e-35!41;UBERON:0003080!9.07e-34!42;UBERON:0001893!9.67e-34!34;UBERON:0001869!5.32e-33!32;UBERON:0000955!5.06e-32!69;UBERON:0006238!5.06e-32!69;UBERON:0002791!1.15e-31!33;UBERON:0002020!2.62e-30!34;UBERON:0003528!2.62e-30!34;UBERON:0002616!4.85e-30!59;UBERON:0004121!1.29e-26!169;UBERON:0000956!6.69e-26!25;UBERON:0000203!6.69e-26!25;UBERON:0000924!1.11e-25!173;UBERON:0006601!1.11e-25!173;UBERON:0000033!8.46e-25!123;UBERON:0000153!2.36e-24!129;UBERON:0007811!2.36e-24!129;UBERON:0003075!3.30e-24!86;UBERON:0007284!3.30e-24!86;UBERON:0002619!2.64e-23!22;UBERON:0003056!7.54e-23!61;UBERON:0002346!1.05e-22!90;UBERON:0001950!1.12e-19!20;UBERON:0007023!1.15e-16!115;UBERON:0000064!2.07e-10!219;UBERON:0000475!3.94e-08!365;UBERON:0002106!5.65e-08!3;UBERON:0004854!5.65e-08!3;UBERON:0009034!5.65e-08!3;UBERON:0002095!5.65e-08!3;UBERON:0004782!5.65e-08!3;UBERON:0003281!5.65e-08!3;UBERON:0009664!5.65e-08!3;UBERON:0002296!5.65e-08!3;UBERON:0005602!5.65e-08!3;UBERON:0001179!5.65e-08!3;UBERON:0006293!5.65e-08!3;UBERON:0002021!7.09e-08!5;UBERON:0000349!1.14e-07!5;UBERON:0001871!4.95e-07!7|ontology_enrichment_uberon_v019=UBERON:0002581;4.22e-21;1!UBERON:0004645;4.22e-21;1!UBERON:0001256;4.22e-21;1!UBERON:0001259;4.22e-21;1!UBERON:0001872;8.13e-17;5!UBERON:0001255;3.02e-11;2!UBERON:0001556;3.02e-11;2!UBERON:0002106;4.52e-08;3!UBERON:0002114;6.34e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0004645,4.22e-21,1;UBERON:0001256,4.22e-21,1;UBERON:0001259,4.22e-21,1;UBERON:0002581,5.16e-21,1;UBERON:0001872,8.14e-17,5;UBERON:0001255,3.02e-11,2;UBERON:0001556,3.02e-11,2;UBERON:0002106,4.52e-08,3;UBERON:0004854,4.52e-08,3;UBERON:0009034,4.52e-08,3;UBERON:0002095,4.52e-08,3;UBERON:0004782,4.52e-08,3;UBERON:0003281,4.52e-08,3;UBERON:0009664,4.52e-08,3;UBERON:0002296,4.52e-08,3;UBERON:0005602,4.52e-08,3;UBERON:0001179,4.52e-08,3;UBERON:0006293,4.52e-08,3;UBERON:0002114,5.18e-08,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0.602694528023977,0,0,0,0,0,0.286235987131057,0.547497700291537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0.0925884451585296,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,1.30139853857622,0.773288812777695,1.50764638800914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853702120180969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,0.511343412510774,1.10776324914963,0,0,0,0,0,0,0,0.969332746095218,0.649376687132959,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.241192877250816,0,0.221158519862449,0,0.438770794307945,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,0,0.234264445725339,0.364909578431332,0.19566461893209,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0.347119476670262,0,0.0870592065804026,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=357 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=630 | |||
|TSSclassifier=W | |||
|UniProt=C9IZC6,B3KU73 | |||
|association_with_transcript=151bp_to_ENST00000452575,ENST00000540923,uc004csw.1_5end | |||
|coexpression_cluster_id=C74 | |||
|description=CAGE_peak_14_at_SHROOM2_5end | |||
|id=chrX:9880874..9880884,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.45e-40;2!CL:1001319;4.22e-21;1!CL:1000600;4.22e-21;1!CL:0000307;6.34e-08;3!CL:0002319;3.09e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,5.97e-23,8;CL:1001319,4.22e-21,1;CL:1000600,4.22e-21,1;CL:0000068,7.76e-08,3;CL:0000069,7.76e-08,3;CL:0000307,7.76e-08,3;CL:0000377,7.76e-08,3;CL:0002319,2.96e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000377;6.34e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.15e-40!82;UBERON:0005743!1.23e-37!86;UBERON:0001049!3.18e-36!57;UBERON:0005068!3.18e-36!57;UBERON:0006241!3.18e-36!57;UBERON:0007135!3.18e-36!57;UBERON:0000073!5.82e-35!94;UBERON:0001016!5.82e-35!94;UBERON:0002780!9.13e-35!41;UBERON:0001890!9.13e-35!41;UBERON:0006240!9.13e-35!41;UBERON:0003080!9.07e-34!42;UBERON:0001893!9.67e-34!34;UBERON:0001869!5.32e-33!32;UBERON:0000955!5.06e-32!69;UBERON:0006238!5.06e-32!69;UBERON:0002791!1.15e-31!33;UBERON:0002020!2.62e-30!34;UBERON:0003528!2.62e-30!34;UBERON:0002616!4.85e-30!59;UBERON:0004121!1.29e-26!169;UBERON:0000956!6.69e-26!25;UBERON:0000203!6.69e-26!25;UBERON:0000924!1.11e-25!173;UBERON:0006601!1.11e-25!173;UBERON:0000033!8.46e-25!123;UBERON:0000153!2.36e-24!129;UBERON:0007811!2.36e-24!129;UBERON:0003075!3.30e-24!86;UBERON:0007284!3.30e-24!86;UBERON:0002619!2.64e-23!22;UBERON:0003056!7.54e-23!61;UBERON:0002346!1.05e-22!90;UBERON:0001950!1.12e-19!20;UBERON:0007023!1.15e-16!115;UBERON:0000064!2.07e-10!219;UBERON:0000475!3.94e-08!365;UBERON:0002106!5.65e-08!3;UBERON:0004854!5.65e-08!3;UBERON:0009034!5.65e-08!3;UBERON:0002095!5.65e-08!3;UBERON:0004782!5.65e-08!3;UBERON:0003281!5.65e-08!3;UBERON:0009664!5.65e-08!3;UBERON:0002296!5.65e-08!3;UBERON:0005602!5.65e-08!3;UBERON:0001179!5.65e-08!3;UBERON:0006293!5.65e-08!3;UBERON:0002021!7.09e-08!5;UBERON:0000349!1.14e-07!5;UBERON:0001871!4.95e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002581;4.22e-21;1!UBERON:0004645;4.22e-21;1!UBERON:0001256;4.22e-21;1!UBERON:0001259;4.22e-21;1!UBERON:0001872;8.13e-17;5!UBERON:0001255;3.02e-11;2!UBERON:0001556;3.02e-11;2!UBERON:0002106;4.52e-08;3!UBERON:0002114;6.34e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,4.22e-21,1;UBERON:0001256,4.22e-21,1;UBERON:0001259,4.22e-21,1;UBERON:0002581,5.16e-21,1;UBERON:0001872,8.14e-17,5;UBERON:0001255,3.02e-11,2;UBERON:0001556,3.02e-11,2;UBERON:0002106,4.52e-08,3;UBERON:0004854,4.52e-08,3;UBERON:0009034,4.52e-08,3;UBERON:0002095,4.52e-08,3;UBERON:0004782,4.52e-08,3;UBERON:0003281,4.52e-08,3;UBERON:0009664,4.52e-08,3;UBERON:0002296,4.52e-08,3;UBERON:0005602,4.52e-08,3;UBERON:0001179,4.52e-08,3;UBERON:0006293,4.52e-08,3;UBERON:0002114,5.18e-08,2 | |||
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|short_description=p14@SHROOM2 | |||
}} |
Revision as of 12:42, 14 September 2013
Short description: | p14@SHROOM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_SHROOM2_5end |
Coexpression cluster: | C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy |
Association with transcript: | 151bp_to_ENST00000452575, ENST00000540923, uc004csw.1_5end |
EntrezGene: | SHROOM2 |
HGNC: | 630 |
UniProt: | C9IZC6B3KU73 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 5.97e-23 | 8 |
bladder cell | 4.22e-21 | 1 |
lower urinary tract cell | 4.22e-21 | 1 |
duct epithelial cell | 7.76e-08 | 3 |
branched duct epithelial cell | 7.76e-08 | 3 |
tracheal epithelial cell | 7.76e-08 | 3 |
tracheoblast | 7.76e-08 | 3 |
neural cell | 2.96e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 4.22e-21 | 1 |
wall of urinary bladder | 4.22e-21 | 1 |
mucosa of urinary bladder | 4.22e-21 | 1 |
postcentral gyrus | 5.16e-21 | 1 |
parietal lobe | 8.14e-17 | 5 |
urinary bladder | 3.02e-11 | 2 |
lower urinary tract | 3.02e-11 | 2 |
spleen | 4.52e-08 | 3 |
gastrointestinal system mesentery | 4.52e-08 | 3 |
stomach region | 4.52e-08 | 3 |
mesentery | 4.52e-08 | 3 |
gastrointestinal system serosa | 4.52e-08 | 3 |
mesentery of stomach | 4.52e-08 | 3 |
gut mesentery | 4.52e-08 | 3 |
dorsal mesentery | 4.52e-08 | 3 |
dorsal mesogastrium | 4.52e-08 | 3 |
peritoneal cavity | 4.52e-08 | 3 |
spleen primordium | 4.52e-08 | 3 |
duodenum | 5.18e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.