FFCP PHASE1:Hg19::chr9:35650572..35650659,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27240|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17710|TSSclassifier=S|UniProt=|association_with_transcript=-105bp_to_ENST00000486859_5end|coexpression_cluster_id=C419|description=CAGE_peak_2_at_SIT1_5end|id=chr9:35650572..35650659,-|ontology_enrichment_celltype=CL:0000542!1.03e-55!53;CL:0000051!1.03e-55!53;CL:0000838!3.80e-54!52;CL:0000945!1.89e-27!24;CL:0000826!1.89e-27!24;CL:0000738!7.38e-25!140;CL:0000084!1.22e-24!25;CL:0000827!1.22e-24!25;CL:0002087!3.01e-24!119;CL:0000791!1.09e-20!18;CL:0000789!1.09e-20!18;CL:0002420!1.09e-20!18;CL:0002419!1.09e-20!18;CL:0000790!1.09e-20!18;CL:0002031!4.05e-20!124;CL:0000037!2.01e-17!172;CL:0000566!2.01e-17!172;CL:0000236!4.98e-16!14;CL:0000625!1.38e-15!11;CL:0000988!1.95e-15!182;CL:0002032!1.29e-14!165;CL:0000837!1.29e-14!165;CL:0000624!2.74e-08!6|ontology_enrichment_celltype_v019=CL:0000945;1.48e-43;24!CL:0000542;8.60e-43;53!CL:0000084;4.66e-36;25!CL:0000791;1.83e-31;18!CL:0000789;1.83e-31;18!CL:0002419;1.83e-31;18!CL:0000625;8.08e-26;11!CL:0000236;5.72e-21;13!CL:0002087;6.93e-10;104!CL:0000624;9.67e-10;6!CL:0000784;6.54e-09;3!CL:0000898;5.60e-08;3!CL:0000738;9.81e-07;136|ontology_enrichment_celltype_v019_2=CL:0000542,8.78e-77,53;CL:0000051,8.78e-77,53;CL:0000838,3.52e-74,52;CL:0000945,1.25e-43,24;CL:0000826,1.25e-43,24;CL:0000084,5.32e-36,25;CL:0000827,5.32e-36,25;CL:0002087,1.31e-33,115;CL:0000738,6.24e-33,136;CL:0000791,2.14e-31,18;CL:0000789,2.14e-31,18;CL:0002420,2.14e-31,18;CL:0002419,2.14e-31,18;CL:0000790,2.14e-31,18;CL:0002031,7.71e-27,120;CL:0000625,6.23e-26,11;CL:0000037,3.33e-24,168;CL:0000236,1.80e-23,14;CL:0000988,2.53e-22,177;CL:0002032,1.69e-19,161;CL:0000837,1.69e-19,161;CL:0000624,1.36e-09,6;CL:0000784,6.46e-09,3;CL:0000817,9.33e-09,3;CL:0000898,6.42e-08,3|ontology_enrichment_development_v019=CL:0000051;8.60e-43;53!CL:0000790;1.83e-31;18|ontology_enrichment_disease=DOID:0060058!5.16e-07!10|ontology_enrichment_disease_v019=DOID:0060058;2.33e-09;10|ontology_enrichment_disease_v019_2=DOID:0060058,2.36e-09,10|ontology_enrichment_uberon=UBERON:0000178!1.31e-07!15;UBERON:0000179!1.31e-07!15;UBERON:0000463!1.31e-07!15|ontology_enrichment_uberon_v019=UBERON:0004177;5.76e-09;5!UBERON:0005057;5.76e-09;5!UBERON:0000178;1.04e-08;15!UBERON:0000179;1.04e-08;15!UBERON:0000463;1.04e-08;15!UBERON:0002390;7.12e-08;32!UBERON:0002370;6.29e-07;2!UBERON:0005058;6.29e-07;2!UBERON:0009113;6.29e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.04e-09,7;UBERON:0005057,2.04e-09,7;UBERON:0000178,1.13e-08,15;UBERON:0000179,1.13e-08,15;UBERON:0000463,1.13e-08,15;UBERON:0002370,6.75e-07,4;UBERON:0005058,6.75e-07,4;UBERON:0009113,6.75e-07,4;UBERON:0003295,6.75e-07,4;UBERON:0005562,6.75e-07,4|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.1532619416292,14.2034019748406,19.2054306405377,0,1.91914699048606,0.154816123316076,0,0,0,33.7756994530115,16.6338002010283,0,0,0.401088894940283,0,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0.512321413058201,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03984977845291,3.82297027883492,3.55803701545422,4.69403244823158,3.60356388332411,6.32227683949932,3.30522436392431,2.86216126360609,0,1.17447437874188,0.382273228125229,1.32171328579026,0,0.263384084775077,0.590129310341499,1.17903228824749,1.02800749499755,6.68745981562712,1.30368906653436,0.946895611469467,0,13.2578443693357,4.41908861212256,4.87374568083967,3.79125409271022,12.9372232922932,11.5752819328292,12.0039670360684,12.4357508003632,11.302320343667,1.63115219478266,0.802622484269139,0,16.5431640338447,4.21542542962113,5.15441168223945,2.27717722817553,4.14135038621326,7.81300144627702,8.55406840003537,4.51725357233318,4.99147783502232,11.2437653897111,4.49876778883632,7.39015197228942,2.41928091869679,2.94184215361858,1.73789284659359,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0,0,9.77811559651902,17.1598473234038,6.68623502393217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0.795178609928912,0.116193942869518,0,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0.591092280605782,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2942852049117,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.308097234229289,0,0,0.107420244868274,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.0297904369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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27240 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17710 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-105bp_to_ENST00000486859_5end | |||
|coexpression_cluster_id=C419 | |||
|description=CAGE_peak_2_at_SIT1_5end | |||
|id=chr9:35650572..35650659,- | |||
|ontology_enrichment_celltype=CL:0000542!1.03e-55!53;CL:0000051!1.03e-55!53;CL:0000838!3.80e-54!52;CL:0000945!1.89e-27!24;CL:0000826!1.89e-27!24;CL:0000738!7.38e-25!140;CL:0000084!1.22e-24!25;CL:0000827!1.22e-24!25;CL:0002087!3.01e-24!119;CL:0000791!1.09e-20!18;CL:0000789!1.09e-20!18;CL:0002420!1.09e-20!18;CL:0002419!1.09e-20!18;CL:0000790!1.09e-20!18;CL:0002031!4.05e-20!124;CL:0000037!2.01e-17!172;CL:0000566!2.01e-17!172;CL:0000236!4.98e-16!14;CL:0000625!1.38e-15!11;CL:0000988!1.95e-15!182;CL:0002032!1.29e-14!165;CL:0000837!1.29e-14!165;CL:0000624!2.74e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.48e-43;24!CL:0000542;8.60e-43;53!CL:0000084;4.66e-36;25!CL:0000791;1.83e-31;18!CL:0000789;1.83e-31;18!CL:0002419;1.83e-31;18!CL:0000625;8.08e-26;11!CL:0000236;5.72e-21;13!CL:0002087;6.93e-10;104!CL:0000624;9.67e-10;6!CL:0000784;6.54e-09;3!CL:0000898;5.60e-08;3!CL:0000738;9.81e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,8.78e-77,53;CL:0000051,8.78e-77,53;CL:0000838,3.52e-74,52;CL:0000945,1.25e-43,24;CL:0000826,1.25e-43,24;CL:0000084,5.32e-36,25;CL:0000827,5.32e-36,25;CL:0002087,1.31e-33,115;CL:0000738,6.24e-33,136;CL:0000791,2.14e-31,18;CL:0000789,2.14e-31,18;CL:0002420,2.14e-31,18;CL:0002419,2.14e-31,18;CL:0000790,2.14e-31,18;CL:0002031,7.71e-27,120;CL:0000625,6.23e-26,11;CL:0000037,3.33e-24,168;CL:0000236,1.80e-23,14;CL:0000988,2.53e-22,177;CL:0002032,1.69e-19,161;CL:0000837,1.69e-19,161;CL:0000624,1.36e-09,6;CL:0000784,6.46e-09,3;CL:0000817,9.33e-09,3;CL:0000898,6.42e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000051;8.60e-43;53!CL:0000790;1.83e-31;18 | |||
|ontology_enrichment_disease=DOID:0060058!5.16e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;2.33e-09;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.36e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.31e-07!15;UBERON:0000179!1.31e-07!15;UBERON:0000463!1.31e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;5.76e-09;5!UBERON:0005057;5.76e-09;5!UBERON:0000178;1.04e-08;15!UBERON:0000179;1.04e-08;15!UBERON:0000463;1.04e-08;15!UBERON:0002390;7.12e-08;32!UBERON:0002370;6.29e-07;2!UBERON:0005058;6.29e-07;2!UBERON:0009113;6.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.04e-09,7;UBERON:0005057,2.04e-09,7;UBERON:0000178,1.13e-08,15;UBERON:0000179,1.13e-08,15;UBERON:0000463,1.13e-08,15;UBERON:0002370,6.75e-07,4;UBERON:0005058,6.75e-07,4;UBERON:0009113,6.75e-07,4;UBERON:0003295,6.75e-07,4;UBERON:0005562,6.75e-07,4 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.1532619416292,14.2034019748406,19.2054306405377,0,1.91914699048606,0.154816123316076,0,0,0,33.7756994530115,16.6338002010283,0,0,0.401088894940283,0,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0.512321413058201,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03984977845291,3.82297027883492,3.55803701545422,4.69403244823158,3.60356388332411,6.32227683949932,3.30522436392431,2.86216126360609,0,1.17447437874188,0.382273228125229,1.32171328579026,0,0.263384084775077,0.590129310341499,1.17903228824749,1.02800749499755,6.68745981562712,1.30368906653436,0.946895611469467,0,13.2578443693357,4.41908861212256,4.87374568083967,3.79125409271022,12.9372232922932,11.5752819328292,12.0039670360684,12.4357508003632,11.302320343667,1.63115219478266,0.802622484269139,0,16.5431640338447,4.21542542962113,5.15441168223945,2.27717722817553,4.14135038621326,7.81300144627702,8.55406840003537,4.51725357233318,4.99147783502232,11.2437653897111,4.49876778883632,7.39015197228942,2.41928091869679,2.94184215361858,1.73789284659359,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0,0,9.77811559651902,17.1598473234038,6.68623502393217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0.795178609928912,0.116193942869518,0,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0.591092280605782,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2942852049117,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.308097234229289,0,0,0.107420244868274,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,3.0585488285695,3.41788312304498,1.66762242820452,0.822724546172388,1.29694662238543,0.540031437238115,3.17250070517708,0,0,0,40.5050921774067,3.60673032441112,107.424183456105,28.2184502730016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03912307084262,0,0,15.877939904478,0,0,0,0.511572370226872,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,80.7327055746318,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,10.2174681960773,0,0,0.394584402849391,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7165515709486,0,0,0,0,0,0,0,0,0,0.393915911536118,0.247247575143499,0.539228350833479,0,12.2776331495387,0,0,0,0.137539436597234,0,0,0,0,0,0,0.104909176269996,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0.170388021785422,0,0,1.32506888912221,0,0,0,0,0.533937062838473,0.471612915298998,0.414239055347196,2.48083010905975,0,5.72425212390211,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0,18.4374380089247,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0.647428837187895,0,1.1598144313382,0,0,0,0,0,0,0,0.848915739187391,0,0,0.245148321753905,0,0,0,0,0,4.32326022707326,3.41626806259959,0,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.303114792872958,0,0,0,0.639701945702943,0.952257725854961,36.4281451475074,30.9132077193372,0,0.0636471582781649,0,0,0,3.2328985447002,0.215166616178029,0,0,0,0,0,0,0.244482888365733,0,0,9.45986829877823,53.5349382146399 | |||
|short_description=p2@SIT1 | |||
}} |
Revision as of 08:55, 14 September 2013
Short description: | p2@SIT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SIT1_5end |
Coexpression cluster: | C419_acute_chronic_thymus_xeroderma_Burkitt_Hodgkin_CD4 |
Association with transcript: | -105bp_to_ENST00000486859_5end |
EntrezGene: | SIT1 |
HGNC: | 17710 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 8.78e-77 | 53 |
common lymphoid progenitor | 8.78e-77 | 53 |
lymphoid lineage restricted progenitor cell | 3.52e-74 | 52 |
lymphocyte of B lineage | 1.25e-43 | 24 |
pro-B cell | 1.25e-43 | 24 |
T cell | 5.32e-36 | 25 |
pro-T cell | 5.32e-36 | 25 |
nongranular leukocyte | 1.31e-33 | 115 |
leukocyte | 6.24e-33 | 136 |
mature alpha-beta T cell | 2.14e-31 | 18 |
alpha-beta T cell | 2.14e-31 | 18 |
immature T cell | 2.14e-31 | 18 |
mature T cell | 2.14e-31 | 18 |
immature alpha-beta T cell | 2.14e-31 | 18 |
hematopoietic lineage restricted progenitor cell | 7.71e-27 | 120 |
CD8-positive, alpha-beta T cell | 6.23e-26 | 11 |
hematopoietic stem cell | 3.33e-24 | 168 |
B cell | 1.80e-23 | 14 |
hematopoietic cell | 2.53e-22 | 177 |
hematopoietic oligopotent progenitor cell | 1.69e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.69e-19 | 161 |
CD4-positive, alpha-beta T cell | 1.36e-09 | 6 |
plasmacytoid dendritic cell | 6.46e-09 | 3 |
precursor B cell | 9.33e-09 | 3 |
naive T cell | 6.42e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.04e-09 | 7 |
immune organ | 2.04e-09 | 7 |
blood | 1.13e-08 | 15 |
haemolymphatic fluid | 1.13e-08 | 15 |
organism substance | 1.13e-08 | 15 |
thymus | 6.75e-07 | 4 |
hemolymphoid system gland | 6.75e-07 | 4 |
thymic region | 6.75e-07 | 4 |
pharyngeal gland | 6.75e-07 | 4 |
thymus primordium | 6.75e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.36e-09 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.