FFCP PHASE1:Hg19::chr9:131446097..131446114,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6418 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10760 | |||
|TSSclassifier=W | |||
|UniProt=Q01105,Q5VXV3 | |||
|association_with_transcript=163bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_4_at_SET_5end | |||
|id=chr9:131446097..131446114,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.13e-28!254;CL:0002076!6.40e-13!43;CL:0000012!1.55e-12!682;CL:0000548!1.64e-12!679;CL:0000004!1.64e-12!679;CL:0000255!1.64e-12!679;CL:0000223!1.75e-12!59;CL:0000063!5.83e-10!578;CL:0002251!6.49e-09!21;CL:0002321!2.71e-08!248;CL:0000220!1.03e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.07e-11;42!CL:0002251;2.28e-10;20!CL:0000039;3.11e-07;7!CL:0000586;3.11e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.06e-33,253;CL:0002076,1.48e-14,42;CL:0000223,6.82e-14,58;CL:0002251,1.70e-10,20;CL:0000039,3.48e-07,7;CL:0000586,3.48e-07,7;CL:0002077,4.95e-07,34;CL:0000076,6.72e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.65e-07;29!CL:0000223;7.94e-07;58 | |||
|ontology_enrichment_disease=DOID:14566!1.19e-30!239;DOID:162!5.60e-30!235;DOID:0050687!4.80e-28!143;DOID:305!6.16e-25!106;DOID:0050686!2.32e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:3095;8.52e-08;22!DOID:2994;8.52e-08;22!DOID:1749;1.07e-07;14!DOID:305;1.24e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.59e-32,235;DOID:14566,4.99e-32,239;DOID:0050687,2.33e-30,143;DOID:305,1.72e-27,106;DOID:0050686,5.09e-08,137;DOID:1749,7.95e-08,14;DOID:3095,9.86e-08,22;DOID:2994,9.86e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0001007!2.10e-12!155;UBERON:0001555!2.10e-12!155;UBERON:0007026!2.10e-12!155;UBERON:0004119!2.68e-12!169;UBERON:0000925!2.68e-12!169;UBERON:0006595!2.68e-12!169;UBERON:0000077!1.22e-10!130;UBERON:0004921!7.93e-10!129;UBERON:0004185!7.93e-10!129;UBERON:0001041!1.15e-08!98;UBERON:0001004!1.62e-08!72;UBERON:0008947!4.43e-07!38;UBERON:0003258!4.43e-07!38;UBERON:0001737!7.69e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.09e-08;9!UBERON:0001557;4.09e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.36e-10,160;UBERON:0000925,4.36e-10,160;UBERON:0006595,4.36e-10,160;UBERON:0001007,6.97e-10,145;UBERON:0001555,6.97e-10,145;UBERON:0007026,6.97e-10,145;UBERON:0001004,3.04e-08,74;UBERON:0001737,4.88e-08,9;UBERON:0004921,7.17e-08,118;UBERON:0008947,4.78e-07,38;UBERON:0003258,4.78e-07,38 | |||
|phase1_expression=0.908391896352783,1.07050261945492,0.563817616383885,0,0.893922188854576,0,0,0,0,1.47440361900905,0,2.83973783769224,0.263766978228454,0.618831764800233,0.331397375727916,0,0.602694528023977,0,0.487932798790507,0.369363174230364,0.204000691244253,0,0.85870796139317,1.09499540058307,1.75759695432724,6.18948586558405,6.73224833489555,5.74588703589859,0,0,1.54816123316076,2.75826367343678,2.409647350226,0.369754010166788,15.3385057148997,9.52533857665724,0.880801318004542,0.553995408531877,0.401088894940283,0.434021741431704,0.447830948479849,0.647787332037959,1.03030227053675,0.436194716338694,0.755751887377619,1.21292030593908,0.464858073811369,1.23350366406548,0.619412741790207,0.28769239232215,0.768482119587302,0.236482229888585,0.344745680736619,0,0,1.12945403725563,0.272906150057846,1.34834090667051,0.612167784741805,0,0,0.989553900560148,0.997318288108159,0,0.290209238628584,0.56738522469114,0.622822248995575,0.251248665256743,1.5644487552606,1.3031330682307,0,0.368277635987565,0.632924774881769,1.26753171787165,1.27562579979026,1.04829322754188,0.786300418025466,0.450530678524519,0.64290234678832,0.570025487482497,0.19891667719909,0.365328307529268,0,0.546138611262131,0.889509253863555,0.426730222566507,1.20118796110804,0,1.32208974556972,0.954053754535364,1.70763890732835,0.587237189370939,1.14681968437569,1.32171328579026,0,1.05353633910031,0,0,0,0.334372990781356,0.32592226663359,0,0,0.557052284425868,0,0,0,0.384273959177026,0.390178042679635,0.164437904603676,0,0,0,0,0,0.679856056185397,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0.267440195783507,0,2.43806866313962,0.670700859703636,1.53435074212236,0.722878304769133,0,1.15877215168659,0,0.973269740605272,3.49778823507051,2.88248216701333,4.0404001418838,0.458426764241994,1.45718115317017,1.11235332835329,0.97364218096405,0.174129737299267,0.664789802594326,2.14641561874808,1.14398982156026,1.11437250398869,0.39752481473341,0,0.694281003215189,1.13061588384802,0.419499436209906,2.20094433552054,1.04497483268405,0,0.35576626268671,0.66944122552934,0.402829317109147,0.760272105718513,0.24406205754817,0,0,1.3394959242612,1.34717623575702,1.35133776579987,1.53316637465883,0,0.183201743930407,0,0,1.3082821564276,0.993943903390637,1.13967460498122,1.32409180813219,0.860509862246441,1.06400514659507,1.12135520028461,0,0.24666754841716,0,0.538842688278752,0.490385709340376,0.151357427644931,1.72852777344,0.234321431833797,0.936480230490962,0.570471821544449,0.597794722207204,0.117434498643765,0.809364721840658,0.98315564691574,1.42907919878425,0.61417158655884,0.619954687054593,1.18800285728205,0.247266929278557,0,0,0.336672227908132,1.12606667884768,0.554128230968366,1.31693286264251,1.83892677479412,0.901428353439581,0.453728732640084,0.538168907066586,0,0.211931901159562,0.900273288253207,0.92747276314595,0.257640540045629,1.48893485065272,2.36286865137773,0.487185025805993,0.504867548488229,0.184099797284599,0.646584227275248,0.710019185033229,1.0075209822764,1.52604533079439,7.15065156704198,5.18217629122586,6.30970109855808,26.5902679362518,29.2890787990482,18.5910308591229,12.3356655468291,27.5029727454435,17.5189132356398,0,1.28648187638577,0,0.928735856063958,1.44375896333917,14.6700432049406,10.7894201649985,14.2196507631254,15.2205682370704,12.854887201452,9.49082476444386,16.3145882873799,10.203516186518,9.23393176671337,0.738155454624648,0,0,1.47008711385542,0,0,0.590789906681404,0.441463099414651,4.42758378755209,4.46076306776166,7.90202054942104,3.37205259772859,7.74073087569557,3.70353780634118,0.651616610620649,1.03993478527958,2.88662684050547,2.31860809950154,3.75707821554629,0.577465791044295,0,0.380508304469197,0.790204397959275,3.43394464837949,0.246217006087397,0.234004265139238,0.743155811443641,5.62403003920662,4.70349958956807,5.52922879245307,13.7920124962386,9.59091997096074,10.3513323374607,0,0.44024217006613,0.207328115540772,0.144119953416961,0.12624243342638,1.0159663086747,0,0,1.71072446022705,1.43958489784653,0.901029173531752,0.571652865261156,0.448524337381443,0.43596006883328,0.95339771567235,0.775630294546667,0,0.845302752556,1.59562869950922,3.12022310734098,0,0,0.799266537048298,0.142977993658148,0,0,1.62868092146868,0.710783897485092,1.58390374586686,1.20575750823834,0.871533458600294,0.99972991182057,0,2.00902836572851,0,0.718874566474748,0,0,0.868687840005475,0.205476322550383,0,1.12085143993527,0,0.215627574859517,0.385029108839245,2.03275699377971,1.30139853857622,0,0.167516265334349,0,0,0,0,1.10422342547226,1.00034104211935,0.271265023699736,4.57535895367776,4.28229573113188,4.1002627908823,1.52283839490527,0,0,2.0694614258501,0,1.29058417979192,2.08520674723399,0,0,0.413536052245775,0.431428401637234,0.640365346820666,0.303127571446259,1.66435439510497,1.20956117331872,0.496215615637554,1.38115775959256,0.561320188866147,1.02511319404561,0.511707249066704,1.44768529029247,1.48418066444991,1.07946785661859,0.532685175939381,1.06765302817952,0,0.464841513839837,8.09758312263869,5.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| |||
|short_description=p4@SET | |||
}} |
Revision as of 07:42, 14 September 2013
Short description: | p4@SET |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SET_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 163bp_to_ENST00000372692, NM_001122821, uc004bvt.3_5end |
EntrezGene: | SET |
HGNC: | 10760 |
UniProt: | Q01105Q5VXV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.06e-33 | 253 |
endo-epithelial cell | 1.48e-14 | 42 |
endodermal cell | 6.82e-14 | 58 |
epithelial cell of alimentary canal | 1.70e-10 | 20 |
germ line cell | 3.48e-07 | 7 |
germ cell | 3.48e-07 | 7 |
ecto-epithelial cell | 4.95e-07 | 34 |
squamous epithelial cell | 6.72e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.36e-10 | 160 |
endoderm | 4.36e-10 | 160 |
presumptive endoderm | 4.36e-10 | 160 |
digestive system | 6.97e-10 | 145 |
digestive tract | 6.97e-10 | 145 |
primitive gut | 6.97e-10 | 145 |
respiratory system | 3.04e-08 | 74 |
larynx | 4.88e-08 | 9 |
subdivision of digestive tract | 7.17e-08 | 118 |
respiratory primordium | 4.78e-07 | 38 |
endoderm of foregut | 4.78e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.59e-32 | 235 |
disease of cellular proliferation | 4.99e-32 | 239 |
cell type cancer | 2.33e-30 | 143 |
carcinoma | 1.72e-27 | 106 |
organ system cancer | 5.09e-08 | 137 |
squamous cell carcinoma | 7.95e-08 | 14 |
germ cell and embryonal cancer | 9.86e-08 | 22 |
germ cell cancer | 9.86e-08 | 22 |
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