FFCP PHASE1:Hg19::chr9:113342280..113342302,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79987|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15985|TSSclassifier=W|UniProt=B3KQM1,Q4LDE5|association_with_transcript=-120bp_to_ENST00000374461,ENST00000401783,NM_153366,uc004beu.2,uc010mtz.2,uc010mua.1_5end|coexpression_cluster_id=C2935|description=CAGE_peak_7_at_SVEP1_5end|id=chr9:113342280..113342302,-|ontology_enrichment_celltype=CL:0000057!6.01e-20!75;CL:0000055!7.95e-15!180;CL:0002620!3.77e-12!23;CL:0000136!1.04e-07!15|ontology_enrichment_celltype_v019=CL:0000136;3.80e-10;13!CL:0002552;8.06e-10;5!CL:0002620;4.19e-07;23!CL:0002556;6.88e-07;6|ontology_enrichment_celltype_v019_2=CL:0000057,2.54e-16,76;CL:0000136,2.44e-10,15;CL:0002552,7.73e-10,5;CL:0002620,3.79e-07,23;CL:0002556,4.32e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!1.22e-14!95;UBERON:0000914!7.28e-12!83;UBERON:0002329!7.28e-12!83;UBERON:0003077!7.28e-12!83;UBERON:0003059!7.28e-12!83;UBERON:0007282!7.28e-12!83;UBERON:0009618!7.28e-12!83;UBERON:0007285!7.28e-12!83;UBERON:0000475!1.38e-09!365;UBERON:0004290!5.81e-08!70;UBERON:0002199!1.57e-07!45;UBERON:0002416!1.57e-07!45;UBERON:0005256!1.89e-07!143;UBERON:0002097!1.93e-07!40;UBERON:0000481!2.42e-07!347;UBERON:0002385!2.46e-07!63;UBERON:0001015!2.46e-07!63;UBERON:0000383!2.46e-07!63;UBERON:0000486!4.28e-07!82;UBERON:0002100!7.23e-07!216;UBERON:0000468!9.67e-07!659|ontology_enrichment_uberon_v019=UBERON:0000075;7.66e-10;16!UBERON:0004457;1.51e-09;9!UBERON:0000042;1.51e-09;9!UBERON:0004905;3.72e-09;8!UBERON:0000982;3.72e-09;8!UBERON:0004770;3.72e-09;8!UBERON:0003688;2.13e-07;6!UBERON:0002358;2.13e-07;6!UBERON:0003684;2.13e-07;6!UBERON:0001178;2.13e-07;6!UBERON:0011135;4.88e-07;5!UBERON:0002216;4.88e-07;5!UBERON:0011134;4.88e-07;5!UBERON:0002209;4.88e-07;5!UBERON:0002213;4.88e-07;5!UBERON:0007844;4.88e-07;5!UBERON:0011138;4.88e-07;5!UBERON:0001130;4.88e-07;5!UBERON:0001066;4.88e-07;5!UBERON:0001468;4.88e-07;5!UBERON:0001758;6.88e-07;6!UBERON:0003672;6.88e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.90e-15,99;UBERON:0000075,5.09e-10,16;UBERON:0004905,3.37e-09,8;UBERON:0000982,3.37e-09,8;UBERON:0004770,3.37e-09,8;UBERON:0000165,1.41e-07,29;UBERON:0000930,1.41e-07,29;UBERON:0003688,2.23e-07,6;UBERON:0002358,2.23e-07,6;UBERON:0003684,2.23e-07,6;UBERON:0001178,2.23e-07,6;UBERON:0011137,2.88e-07,14;UBERON:0002199,3.31e-07,46;UBERON:0002416,3.31e-07,46;UBERON:0001758,4.32e-07,6;UBERON:0003672,4.32e-07,6;UBERON:0011135,4.46e-07,5;UBERON:0002216,4.46e-07,5;UBERON:0011134,4.46e-07,5;UBERON:0002209,4.46e-07,5;UBERON:0002213,4.46e-07,5;UBERON:0005856,4.46e-07,5;UBERON:0005866,4.46e-07,5;UBERON:0005863,4.46e-07,5;UBERON:0007844,4.46e-07,5;UBERON:0011138,4.46e-07,5;UBERON:0001130,4.46e-07,5;UBERON:0001066,4.46e-07,5;UBERON:0001468,4.46e-07,5;UBERON:0004457,7.81e-07,12;UBERON:0000042,7.81e-07,12|phase1_expression=2.72517568905835,4.71021152560163,2.11431606143957,5.00366491765652,1.34088328328186,7.85104671690332,0,1.89515962028049,5.48489819219661,0,0,0,0,3.96052329472149,7.95353701746998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.722878304769133,3.50936537445123,2.02785126545153,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.01304409331664,2.1185468930115,6.3104056564739,0.709336764396714,0,0,0,0.622422070799533,0.134710672069688,0,1.51357427644931,0,0.937285727335186,1.5608003841516,0,1.19558944441441,0.117434498643765,0.485618833104395,0.280901613404497,2.65400422631361,1.22834317311768,3.51307655997603,8.31602000097437,7.41800787835671,0.910161361938026,0,1.0100166837244,1.87677779807946,1.93944880838928,1.75591048352335,0.612975591598039,4.05642759047811,0,0.717558542755448,2.77624605464138,3.17897851739343,2.10063767259082,1.8549455262919,1.8034837803194,0.558350568994769,0.843881661206331,0.974370051611986,2.27190396819703,4.41839513483037,10.0220555227663,1.06502877754984,0.10075209822764,0.339121184620975,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,17.1816133371832,6.49691533502627,0.118306800039844,0,0.241011029883482,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0.651616610620649,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,7.15312891703765,0,0.26593811658487,0,0,0,0.266422179016099,1.00084595560703,0.542621605391443,2.46972101034231,0,1.42156779497018,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0.821905290201534,0,0,0,0,0,0,0,0,0,0,0,0,0,7.72956397830581,0,5.15403545029498,0.623912584592421,1.60586089917446,2.36553622550902,4.68565659970853,3.61135319673263,0,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79987 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15985 | |||
|TSSclassifier=W | |||
|UniProt=B3KQM1,Q4LDE5 | |||
|association_with_transcript=-120bp_to_ENST00000374461,ENST00000401783,NM_153366,uc004beu.2,uc010mtz.2,uc010mua.1_5end | |||
|coexpression_cluster_id=C2935 | |||
|description=CAGE_peak_7_at_SVEP1_5end | |||
|id=chr9:113342280..113342302,- | |||
|ontology_enrichment_celltype=CL:0000057!6.01e-20!75;CL:0000055!7.95e-15!180;CL:0002620!3.77e-12!23;CL:0000136!1.04e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;3.80e-10;13!CL:0002552;8.06e-10;5!CL:0002620;4.19e-07;23!CL:0002556;6.88e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.54e-16,76;CL:0000136,2.44e-10,15;CL:0002552,7.73e-10,5;CL:0002620,3.79e-07,23;CL:0002556,4.32e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.22e-14!95;UBERON:0000914!7.28e-12!83;UBERON:0002329!7.28e-12!83;UBERON:0003077!7.28e-12!83;UBERON:0003059!7.28e-12!83;UBERON:0007282!7.28e-12!83;UBERON:0009618!7.28e-12!83;UBERON:0007285!7.28e-12!83;UBERON:0000475!1.38e-09!365;UBERON:0004290!5.81e-08!70;UBERON:0002199!1.57e-07!45;UBERON:0002416!1.57e-07!45;UBERON:0005256!1.89e-07!143;UBERON:0002097!1.93e-07!40;UBERON:0000481!2.42e-07!347;UBERON:0002385!2.46e-07!63;UBERON:0001015!2.46e-07!63;UBERON:0000383!2.46e-07!63;UBERON:0000486!4.28e-07!82;UBERON:0002100!7.23e-07!216;UBERON:0000468!9.67e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0000075;7.66e-10;16!UBERON:0004457;1.51e-09;9!UBERON:0000042;1.51e-09;9!UBERON:0004905;3.72e-09;8!UBERON:0000982;3.72e-09;8!UBERON:0004770;3.72e-09;8!UBERON:0003688;2.13e-07;6!UBERON:0002358;2.13e-07;6!UBERON:0003684;2.13e-07;6!UBERON:0001178;2.13e-07;6!UBERON:0011135;4.88e-07;5!UBERON:0002216;4.88e-07;5!UBERON:0011134;4.88e-07;5!UBERON:0002209;4.88e-07;5!UBERON:0002213;4.88e-07;5!UBERON:0007844;4.88e-07;5!UBERON:0011138;4.88e-07;5!UBERON:0001130;4.88e-07;5!UBERON:0001066;4.88e-07;5!UBERON:0001468;4.88e-07;5!UBERON:0001758;6.88e-07;6!UBERON:0003672;6.88e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.90e-15,99;UBERON:0000075,5.09e-10,16;UBERON:0004905,3.37e-09,8;UBERON:0000982,3.37e-09,8;UBERON:0004770,3.37e-09,8;UBERON:0000165,1.41e-07,29;UBERON:0000930,1.41e-07,29;UBERON:0003688,2.23e-07,6;UBERON:0002358,2.23e-07,6;UBERON:0003684,2.23e-07,6;UBERON:0001178,2.23e-07,6;UBERON:0011137,2.88e-07,14;UBERON:0002199,3.31e-07,46;UBERON:0002416,3.31e-07,46;UBERON:0001758,4.32e-07,6;UBERON:0003672,4.32e-07,6;UBERON:0011135,4.46e-07,5;UBERON:0002216,4.46e-07,5;UBERON:0011134,4.46e-07,5;UBERON:0002209,4.46e-07,5;UBERON:0002213,4.46e-07,5;UBERON:0005856,4.46e-07,5;UBERON:0005866,4.46e-07,5;UBERON:0005863,4.46e-07,5;UBERON:0007844,4.46e-07,5;UBERON:0011138,4.46e-07,5;UBERON:0001130,4.46e-07,5;UBERON:0001066,4.46e-07,5;UBERON:0001468,4.46e-07,5;UBERON:0004457,7.81e-07,12;UBERON:0000042,7.81e-07,12 | |||
|phase1_expression=2.72517568905835,4.71021152560163,2.11431606143957,5.00366491765652,1.34088328328186,7.85104671690332,0,1.89515962028049,5.48489819219661,0,0,0,0,3.96052329472149,7.95353701746998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.722878304769133,3.50936537445123,2.02785126545153,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.01304409331664,2.1185468930115,6.3104056564739,0.709336764396714,0,0,0,0.622422070799533,0.134710672069688,0,1.51357427644931,0,0.937285727335186,1.5608003841516,0,1.19558944441441,0.117434498643765,0.485618833104395,0.280901613404497,2.65400422631361,1.22834317311768,3.51307655997603,8.31602000097437,7.41800787835671,0.910161361938026,0,1.0100166837244,1.87677779807946,1.93944880838928,1.75591048352335,0.612975591598039,4.05642759047811,0,0.717558542755448,2.77624605464138,3.17897851739343,2.10063767259082,1.8549455262919,1.8034837803194,0.558350568994769,0.843881661206331,0.974370051611986,2.27190396819703,4.41839513483037,10.0220555227663,1.06502877754984,0.10075209822764,0.339121184620975,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,17.1816133371832,6.49691533502627,0.118306800039844,0,0.241011029883482,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0.651616610620649,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,7.15312891703765,0,0.26593811658487,0,0,0,0.266422179016099,1.00084595560703,0.542621605391443,2.46972101034231,0,1.42156779497018,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0.821905290201534,0,0,0,0,0,0,0,0,0,0,0,0,0,7.72956397830581,0,5.15403545029498,0.623912584592421,1.60586089917446,2.36553622550902,4.68565659970853,3.61135319673263,0,1.03473071292505,0,0,2.25897397617015,0,0,0,0,0,0,0,0,0.744323423456331,4.14347327877769,0.280660094433074,1.53766979106841,2.55853624533352,0,2.96836132889982,0,0,0.0821271560138091,0,0,0,0,0,0.574072240823034,1.45672934405374,3.2781103739856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6132241997154,0,0,0,0,3.21367859688319,0.386682873168488,0.462145851343933,0,0.137836572484531,2.79292636657511,2.17525040871343,0.681813019328807,0.0890320356467374,0,0,0,0,0,2.51849877464512,0,1.23213432070436,0,0,0.18532421910392,0.143124886741991,0.372158369359667,0.632758849437452,1.5250415513906,0.767693373934002,2.56763392820352,0.95460974377781,0,6.29553601541602,1.92175920815238,1.7671860351853,0.404364963146632,0,0,0.48763373908959,0,0,1.36499911407986,1.69686518344455,1.13008116620243,0,0,0,0.578775534266688,2.62357900818653,0,0.30982349809975,0,0,0.294747123039363,0,0,5.69990615303693,11.8546161465565,0,2.79947776195986,0,0,0,12.5211255033116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80921266106924,0,0,0,0,0,0,0,0.140669416410513,0,0,0,1.19548792950642,0.276283915531148,0,0.306806047506464,0,0.311039587661807,0,0,0,2.07151151837561,0,0,0,0,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0,0,1.21637185924347,0,0,0,0,1.00035336054936,0.227884111694002,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76915129006678,0.611030144933625,0,0,0,0,1.60515529459758,0,0,0,0,0.394584402849391,0,0,3.03295582216742,0,0,0,0,0,0,0,0,0,0,0,1.57254001417827,0,0,0,0,1.06687918137261,0,1.58186518546373,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0.279282401272254,1.60412296808179,0.717873024576814,0,0,0,0.268733889946905,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0.2249738915515,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,1.28144895081234,2.35806457649499,0.828478110694391,0.496166021811951,0,0,0,1.08803560673895,0.7520696820681,0.306345576763462,0,0,0,0,0.250381861413,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0.701139929541673,0,0.947015026375446,1.0062716070103,0.889811221596536,0.915360273587694,0.907385542579434,0.15543720058278,0.443565449968902,0.159296767163702,0,0,0.414706207840855,0,1.04349012362347,0.450772826991655,1.14241563650639,0.406870733204662,0.181848659202559,0.107410557042488,0,0.398095888698616,0,1.03018711554838,0,0,0,0.428883182749851,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0.127894371303652,0,0,0,0.169732529954025,0,0,0.558644917973244,0,0,0,4.23211132428821,1.8374728641192,0.128458450192919,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0.397832444232549,0.676892955143315,0,0,0,0.163771917510097,0,0,0,0,0.126831620387814,0,0,1.48863353516788,0,0,0,0,0,0,30.5136153359478,0,0,0,0,0,0,0.706437835654626,0,0,0,0,0,0.214429632529969,0,0,0,4.81026818838152,0,0.3414369541879,2.07377898544228,0.430227358820278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| |||
|short_description=p7@SVEP1 | |||
}} |
Revision as of 06:55, 14 September 2013
Short description: | p7@SVEP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SVEP1_5end |
Coexpression cluster: | C2935_placenta_Mesenchymal_tridermal_sacrococcigeal_Synoviocyte_Smooth_Fibroblast |
Association with transcript: | -120bp_to_ENST00000374461, ENST00000401783, NM_153366, uc004beu.2, uc010mtz.2, uc010mua.1_5end |
EntrezGene: | SVEP1 |
HGNC: | 15985 |
UniProt: | B3KQM1Q4LDE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.54e-16 | 76 |
fat cell | 2.44e-10 | 15 |
fibroblast of gingiva | 7.73e-10 | 5 |
skin fibroblast | 3.79e-07 | 23 |
fibroblast of periodontium | 4.32e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.90e-15 | 99 |
subdivision of skeletal system | 5.09e-10 | 16 |
articulation | 3.37e-09 | 8 |
skeletal joint | 3.37e-09 | 8 |
articular system | 3.37e-09 | 8 |
mouth | 1.41e-07 | 29 |
stomodeum | 1.41e-07 | 29 |
omentum | 2.23e-07 | 6 |
peritoneum | 2.23e-07 | 6 |
abdominal cavity | 2.23e-07 | 6 |
visceral peritoneum | 2.23e-07 | 6 |
axial skeletal system | 2.88e-07 | 14 |
integument | 3.31e-07 | 46 |
integumental system | 3.31e-07 | 46 |
periodontium | 4.32e-07 | 6 |
dentition | 4.32e-07 | 6 |
intervertebral cartilage | 4.46e-07 | 5 |
symphysis | 4.46e-07 | 5 |
nonsynovial joint | 4.46e-07 | 5 |
fibrous joint | 4.46e-07 | 5 |
cartilaginous joint | 4.46e-07 | 5 |
developing mesenchymal condensation | 4.46e-07 | 5 |
pre-cartilage condensation | 4.46e-07 | 5 |
cartilaginous condensation | 4.46e-07 | 5 |
cartilage element | 4.46e-07 | 5 |
post-cranial axial skeletal system | 4.46e-07 | 5 |
vertebral column | 4.46e-07 | 5 |
intervertebral disk | 4.46e-07 | 5 |
intervertebral joint | 4.46e-07 | 5 |
cavity lining | 7.81e-07 | 12 |
serous membrane | 7.81e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.