FFCP PHASE1:Hg19::chr9:113342266..113342273,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79987|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15985|TSSclassifier=S|UniProt=B3KQM1,Q4LDE5|association_with_transcript=-106bp_to_ENST00000374461,ENST00000401783,NM_153366,uc004beu.2,uc010mtz.2,uc010mua.1_5end|coexpression_cluster_id=C2935|description=CAGE_peak_12_at_SVEP1_5end|id=chr9:113342266..113342273,-|ontology_enrichment_celltype=CL:0000057!5.68e-10!75;CL:1000306!1.18e-07!4;CL:0002547!1.18e-07!4;CL:0000136!2.71e-07!15;CL:0002615!7.95e-07!3;CL:0002504!8.11e-07!3;CL:1000279!8.11e-07!3;CL:1000280!8.11e-07!3|ontology_enrichment_celltype_v019=CL:0002367;4.17e-07;2|ontology_enrichment_celltype_v019_2=CL:0002367,3.48e-07,2|ontology_enrichment_development_v019=UBERON:0003124;1.82e-13;1!UBERON:0003099;6.05e-13;1!UBERON:0003852;6.05e-13;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3307;2.43e-07;2|ontology_enrichment_disease_v019_2=DOID:3307,2.43e-07,2|ontology_enrichment_uberon=UBERON:0000415!1.18e-07!4;UBERON:0007240!1.18e-07!4;UBERON:0005742!1.18e-07!4;UBERON:0005734!1.18e-07!4;UBERON:0004664!1.18e-07!4;UBERON:0004663!1.18e-07!4|ontology_enrichment_uberon_v019=UBERON:0005705;6.05e-13;1!UBERON:0008193;6.05e-13;1!UBERON:0010912;6.05e-13;1!UBERON:0002514;6.05e-13;1!UBERON:0003457;6.05e-13;1!UBERON:0008907;6.05e-13;1!UBERON:0008001;6.05e-13;1!UBERON:0007213;6.05e-13;1!UBERON:0009891;6.05e-13;1!UBERON:0007914;6.05e-13;1!UBERON:0007375;6.05e-13;1!UBERON:0003323;6.05e-13;1!UBERON:0010258;6.05e-13;1!UBERON:0005253;6.05e-13;1!UBERON:0007842;6.05e-13;1!UBERON:0002397;6.05e-13;1!UBERON:0003113;6.05e-13;1!UBERON:0003277;6.05e-13;1!UBERON:0001709;6.05e-13;1!UBERON:0002244;6.05e-13;1!UBERON:0005620;6.05e-13;1!UBERON:0010364;6.05e-13;1!UBERON:0004288;6.05e-13;1!UBERON:0004457;2.60e-12;9!UBERON:0000042;2.60e-12;9!UBERON:0003688;1.12e-08;6!UBERON:0002358;1.12e-08;6!UBERON:0003684;1.12e-08;6!UBERON:0001178;1.12e-08;6!UBERON:0001013;3.77e-08;14!UBERON:0005969;4.17e-07;2!UBERON:0004089;4.17e-07;2!UBERON:0003956;4.17e-07;2!UBERON:0000075;4.32e-07;16!UBERON:0004905;8.35e-07;8!UBERON:0000982;8.35e-07;8!UBERON:0004770;8.35e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0005705,8.64e-13,1;UBERON:0008193,8.64e-13,1;UBERON:0010912,8.64e-13,1;UBERON:0002514,8.64e-13,1;UBERON:0003457,8.64e-13,1;UBERON:0008907,8.64e-13,1;UBERON:0008001,8.64e-13,1;UBERON:0007213,8.64e-13,1;UBERON:0009891,8.64e-13,1;UBERON:0007914,8.64e-13,1;UBERON:0009292,8.64e-13,1;UBERON:0003099,8.64e-13,1;UBERON:0007375,8.64e-13,1;UBERON:0003323,8.64e-13,1;UBERON:0010258,8.64e-13,1;UBERON:0007842,8.64e-13,1;UBERON:0009494,8.64e-13,1;UBERON:0010042,8.64e-13,1;UBERON:0010045,8.64e-13,1;UBERON:0010259,8.64e-13,1;UBERON:0010359,8.64e-13,1;UBERON:0009526,8.64e-13,1;UBERON:0002397,8.64e-13,1;UBERON:0003113,8.64e-13,1;UBERON:0003277,8.64e-13,1;UBERON:0001709,8.64e-13,1;UBERON:0004066,8.64e-13,1;UBERON:0002244,8.64e-13,1;UBERON:0005620,8.64e-13,1;UBERON:0004362,8.64e-13,1;UBERON:0010364,8.64e-13,1;UBERON:0010046,8.64e-13,1;UBERON:0005868,8.64e-13,1;UBERON:0007238,8.64e-13,1;UBERON:0004288,8.64e-13,1;UBERON:0004068,8.64e-13,1;UBERON:0010334,8.64e-13,1;UBERON:0003852,8.64e-13,1;UBERON:0010253,8.64e-13,1;UBERON:0004457,2.33e-09,12;UBERON:0000042,2.33e-09,12;UBERON:0003688,1.17e-08,6;UBERON:0002358,1.17e-08,6;UBERON:0003684,1.17e-08,6;UBERON:0001178,1.17e-08,6;UBERON:0001013,3.26e-08,14;UBERON:0011137,5.18e-08,14;UBERON:0005969,3.48e-07,2;UBERON:0003956,3.48e-07,2;UBERON:0000075,4.51e-07,16;UBERON:0005253,4.98e-07,2;UBERON:0004089,4.98e-07,2;UBERON:0004905,7.88e-07,8;UBERON:0000982,7.88e-07,8;UBERON:0004770,7.88e-07,8|phase1_expression=0.181678379270557,0.856402095563933,0.563817616383885,1.0007329835313,0.446961094427288,0.872338524100369,0,0,1.30592814099919,0,0,0,0,0.37129905888014,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,1.14734648299525,0.354668382198357,0.560677600142307,0,0,0.311211035399766,0,0,0.454072282934794,0,0,0,0,0.149448680551801,0,0,0,0.204154171254893,0.122834317311768,1.03325781175765,0,0.494533858557114,0,0,0,0.125118519871964,1.10825646193673,0.877955241761676,0,0.901428353439581,0,0,0.640672166455702,0.423863802319124,0,0.309157587715317,0,0,0,0.194874010322397,0,0.552299391853796,0.80823028409406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,10.7296933755565,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34960640891054,0,0.542530047399471,0,0.178428988797162,0.473107245101804,0.35142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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79987 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15985 | |||
|TSSclassifier=S | |||
|UniProt=B3KQM1,Q4LDE5 | |||
|association_with_transcript=-106bp_to_ENST00000374461,ENST00000401783,NM_153366,uc004beu.2,uc010mtz.2,uc010mua.1_5end | |||
|coexpression_cluster_id=C2935 | |||
|description=CAGE_peak_12_at_SVEP1_5end | |||
|id=chr9:113342266..113342273,- | |||
|ontology_enrichment_celltype=CL:0000057!5.68e-10!75;CL:1000306!1.18e-07!4;CL:0002547!1.18e-07!4;CL:0000136!2.71e-07!15;CL:0002615!7.95e-07!3;CL:0002504!8.11e-07!3;CL:1000279!8.11e-07!3;CL:1000280!8.11e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002367;4.17e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002367,3.48e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.82e-13;1!UBERON:0003099;6.05e-13;1!UBERON:0003852;6.05e-13;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3307;2.43e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,2.43e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000415!1.18e-07!4;UBERON:0007240!1.18e-07!4;UBERON:0005742!1.18e-07!4;UBERON:0005734!1.18e-07!4;UBERON:0004664!1.18e-07!4;UBERON:0004663!1.18e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0005705;6.05e-13;1!UBERON:0008193;6.05e-13;1!UBERON:0010912;6.05e-13;1!UBERON:0002514;6.05e-13;1!UBERON:0003457;6.05e-13;1!UBERON:0008907;6.05e-13;1!UBERON:0008001;6.05e-13;1!UBERON:0007213;6.05e-13;1!UBERON:0009891;6.05e-13;1!UBERON:0007914;6.05e-13;1!UBERON:0007375;6.05e-13;1!UBERON:0003323;6.05e-13;1!UBERON:0010258;6.05e-13;1!UBERON:0005253;6.05e-13;1!UBERON:0007842;6.05e-13;1!UBERON:0002397;6.05e-13;1!UBERON:0003113;6.05e-13;1!UBERON:0003277;6.05e-13;1!UBERON:0001709;6.05e-13;1!UBERON:0002244;6.05e-13;1!UBERON:0005620;6.05e-13;1!UBERON:0010364;6.05e-13;1!UBERON:0004288;6.05e-13;1!UBERON:0004457;2.60e-12;9!UBERON:0000042;2.60e-12;9!UBERON:0003688;1.12e-08;6!UBERON:0002358;1.12e-08;6!UBERON:0003684;1.12e-08;6!UBERON:0001178;1.12e-08;6!UBERON:0001013;3.77e-08;14!UBERON:0005969;4.17e-07;2!UBERON:0004089;4.17e-07;2!UBERON:0003956;4.17e-07;2!UBERON:0000075;4.32e-07;16!UBERON:0004905;8.35e-07;8!UBERON:0000982;8.35e-07;8!UBERON:0004770;8.35e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005705,8.64e-13,1;UBERON:0008193,8.64e-13,1;UBERON:0010912,8.64e-13,1;UBERON:0002514,8.64e-13,1;UBERON:0003457,8.64e-13,1;UBERON:0008907,8.64e-13,1;UBERON:0008001,8.64e-13,1;UBERON:0007213,8.64e-13,1;UBERON:0009891,8.64e-13,1;UBERON:0007914,8.64e-13,1;UBERON:0009292,8.64e-13,1;UBERON:0003099,8.64e-13,1;UBERON:0007375,8.64e-13,1;UBERON:0003323,8.64e-13,1;UBERON:0010258,8.64e-13,1;UBERON:0007842,8.64e-13,1;UBERON:0009494,8.64e-13,1;UBERON:0010042,8.64e-13,1;UBERON:0010045,8.64e-13,1;UBERON:0010259,8.64e-13,1;UBERON:0010359,8.64e-13,1;UBERON:0009526,8.64e-13,1;UBERON:0002397,8.64e-13,1;UBERON:0003113,8.64e-13,1;UBERON:0003277,8.64e-13,1;UBERON:0001709,8.64e-13,1;UBERON:0004066,8.64e-13,1;UBERON:0002244,8.64e-13,1;UBERON:0005620,8.64e-13,1;UBERON:0004362,8.64e-13,1;UBERON:0010364,8.64e-13,1;UBERON:0010046,8.64e-13,1;UBERON:0005868,8.64e-13,1;UBERON:0007238,8.64e-13,1;UBERON:0004288,8.64e-13,1;UBERON:0004068,8.64e-13,1;UBERON:0010334,8.64e-13,1;UBERON:0003852,8.64e-13,1;UBERON:0010253,8.64e-13,1;UBERON:0004457,2.33e-09,12;UBERON:0000042,2.33e-09,12;UBERON:0003688,1.17e-08,6;UBERON:0002358,1.17e-08,6;UBERON:0003684,1.17e-08,6;UBERON:0001178,1.17e-08,6;UBERON:0001013,3.26e-08,14;UBERON:0011137,5.18e-08,14;UBERON:0005969,3.48e-07,2;UBERON:0003956,3.48e-07,2;UBERON:0000075,4.51e-07,16;UBERON:0005253,4.98e-07,2;UBERON:0004089,4.98e-07,2;UBERON:0004905,7.88e-07,8;UBERON:0000982,7.88e-07,8;UBERON:0004770,7.88e-07,8 | |||
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|short_description=p12@SVEP1 | |||
}} |
Revision as of 06:55, 14 September 2013
Short description: | p12@SVEP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_SVEP1_5end |
Coexpression cluster: | C2935_placenta_Mesenchymal_tridermal_sacrococcigeal_Synoviocyte_Smooth_Fibroblast |
Association with transcript: | -106bp_to_ENST00000374461, ENST00000401783, NM_153366, uc004beu.2, uc010mtz.2, uc010mua.1_5end |
EntrezGene: | SVEP1 |
HGNC: | 15985 |
UniProt: | B3KQM1Q4LDE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trabecular meshwork cell | 3.48e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
teratoma | 2.43e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.